genome.fa.s21.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  206  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63815015--63815263	50	4.8	50	85	4	284	20	29	24	26	1.99
63815014--63815263	100	2.4	104	88	6	357	20	29	24	26	1.99
63815358--63815389	13	2.5	13	94	0	55	56	12	0	31	1.37
63815865--63815890	13	2.0	13	100	0	52	46	15	7	30	1.74
63816046--63816177	40	3.4	39	75	7	124	28	17	24	30	1.97
63816510--63816554	17	2.6	17	89	0	54	26	6	8	57	1.54
63820090--63820124	16	2.3	15	90	5	52	25	0	0	74	0.82
63822712--63822771	29	2.0	30	84	9	79	31	0	8	60	1.27
63828232--63828266	7	5.0	7	92	0	52	42	34	0	22	1.54
63834993--63835035	19	2.3	19	88	8	61	32	0	6	60	1.23
63835171--63835223	25	2.2	25	86	3	72	52	16	11	18	1.73
63838845--63838878	18	1.9	17	88	5	50	26	2	5	64	1.30
63840157--63840202	21	2.3	21	85	14	62	47	0	4	47	1.21
63840818--63840854	18	2.1	18	100	0	74	32	13	5	48	1.65
63858849--63858899	25	2.0	25	81	7	59	64	7	0	27	1.21
63862375--63862481	56	1.9	57	86	1	153	41	24	9	25	1.84
63863016--63863070	27	2.0	27	85	0	74	38	10	16	34	1.84
63867400--63867441	19	2.2	20	83	12	52	38	2	0	59	1.10
63885298--63885337	21	1.9	21	85	10	55	57	15	0	27	1.38
63887248--63887281	10	3.4	10	84	15	52	29	8	0	61	1.26
63887242--63887281	20	2.0	20	100	0	80	35	10	0	55	1.34
63890495--63890581	31	2.8	31	81	6	106	34	8	12	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63892475--63892527	13	4.1	13	75	0	52	35	26	3	33	1.75
63895358--63895421	17	3.4	17	69	22	56	39	1	1	57	1.17
63895340--63895421	40	2.0	40	97	0	155	43	3	2	50	1.33
63905728--63905808	30	2.7	30	72	16	76	49	13	4	32	1.63
63918587--63918636	21	2.5	20	80	6	57	48	6	0	46	1.27
63918826--63918860	16	2.2	16	94	0	61	62	2	0	34	1.10
63918829--63918876	19	2.4	22	80	16	59	54	2	0	43	1.12
63920475--63920566	43	2.1	46	87	6	136	31	6	23	38	1.81
63922437--63922485	22	2.3	21	96	3	89	44	4	2	48	1.33
63922459--63922521	31	2.0	33	82	17	80	39	3	0	57	1.15
63929418--63929478	29	2.1	28	96	3	113	22	14	13	49	1.78
63940032--63940080	3	16.3	3	95	0	89	30	0	34	34	1.58
63941113--63941141	12	2.4	12	100	0	58	44	10	6	37	1.65
63940979--63941474	172	2.8	174	84	8	571	26	13	19	39	1.90
63943597--63944238	132	5.0	132	84	6	760	17	27	27	27	1.98
63943741--63944238	252	2.0	252	87	3	716	17	28	27	27	1.98
63943536--63944230	384	1.8	384	86	1	1025	17	28	26	27	1.98
63954081--63954126	2	23.0	2	100	0	92	0	50	0	50	1.00
63954742--63954808	31	2.2	31	86	0	89	40	14	16	28	1.88
63963808--63963852	19	2.4	19	76	0	54	20	11	2	66	1.33
63975645--63976023	191	2.0	189	85	4	512	40	18	12	27	1.87
63979043--63979073	16	1.9	16	100	0	62	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63979418--63979497	31	2.7	30	77	21	87	51	7	1	40	1.38
63979456--63979519	30	2.2	30	83	8	78	45	4	0	50	1.22
63981615--63981654	2	20.5	2	94	5	73	50	0	0	50	1.00
63986211--63986255	19	2.4	18	92	3	72	35	2	13	48	1.54
63986981--63987021	15	2.5	17	76	15	50	34	2	2	60	1.23
63987272--63987432	41	3.9	41	83	3	207	34	24	24	15	1.95
63987270--63987427	82	1.9	82	90	0	253	34	24	24	15	1.95
63987404--63987460	28	2.0	28	100	0	114	38	28	22	10	1.87
63987367--63987497	69	1.9	69	100	0	262	37	24	26	11	1.89
63988623--63988649	7	3.9	7	100	0	54	14	0	0	85	0.61
63990562--63990610	9	5.4	9	80	0	62	28	8	22	40	1.82
63996476--63996517	16	2.6	16	84	0	57	52	16	7	23	1.68
64017010--64017034	2	12.5	2	100	0	50	52	0	48	0	1.00
64023565--64023640	31	2.5	32	81	14	90	38	7	10	43	1.68
64023811--64023889	29	2.6	29	80	6	77	50	11	3	34	1.56
64023815--64023889	31	2.5	29	78	6	78	49	12	4	34	1.59
64025730--64025763	6	5.7	6	100	0	68	32	0	17	50	1.47
64027676--64027768	46	2.0	46	100	0	186	31	21	23	23	1.99
64029461--64029515	29	1.9	28	85	3	74	54	3	3	38	1.36
64029454--64029521	28	2.4	28	78	7	75	55	4	4	35	1.40
64033838--64033960	57	2.2	57	84	0	165	31	17	22	27	1.97
64034845--64034896	24	2.2	24	85	0	68	50	11	3	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64039256--64039312	24	2.4	24	85	5	71	47	10	5	36	1.61
64039268--64039319	24	2.2	24	85	0	68	50	7	3	38	1.50
64058966--64058998	16	2.1	16	94	0	57	33	21	12	33	1.90
64061447--64061474	14	2.0	14	100	0	56	50	7	0	42	1.30
64063781--64063820	2	20.0	2	89	0	62	47	47	2	2	1.29
64066244--64066490	132	1.9	132	89	0	386	29	19	23	27	1.98
64066256--64066558	132	2.3	132	81	6	337	29	19	23	27	1.98
64066507--64066645	44	3.1	44	89	3	199	30	16	22	30	1.96
64066662--64066754	46	2.0	46	100	0	186	34	13	32	19	1.91
64068200--64068256	3	19.0	3	81	0	69	31	3	3	61	1.30
64069231--64069302	20	3.3	23	73	21	75	58	5	5	30	1.44
64070837--64070927	44	2.0	45	85	6	123	26	16	21	35	1.95
64079726--64079754	14	2.1	14	93	6	51	44	10	0	44	1.38
64093681--64093817	58	2.3	60	82	9	165	38	10	18	32	1.85
64100801--64101351	222	2.5	222	94	0	960	42	20	13	23	1.87
64106232--64106261	2	15.0	2	92	0	51	50	3	0	46	1.18
64107555--64107634	33	2.4	32	93	4	124	32	28	8	30	1.87
64118693--64118720	2	14.0	2	100	0	56	50	0	0	50	1.00
64122747--64122773	12	2.2	12	100	0	54	48	0	0	51	1.00
64125511--64125546	16	2.2	16	90	0	54	30	0	30	38	1.58
64125519--64125564	16	2.9	16	90	0	65	34	0	32	32	1.58
64125786--64125820	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64125801--64126120	61	5.3	61	68	17	220	49	5	2	42	1.40
64125885--64125936	15	3.6	15	80	12	56	53	1	0	44	1.11
64125772--64126181	120	3.4	120	94	0	696	49	4	2	43	1.37
64126220--64126304	39	2.2	40	95	2	154	60	11	5	22	1.53
64126920--64127013	30	3.1	30	96	1	170	26	26	6	40	1.80
64126930--64127006	15	5.1	15	69	12	68	27	23	7	41	1.81
64135564--64135799	118	2.0	118	85	3	321	26	8	19	45	1.79
64144632--64144680	4	12.2	4	100	0	98	51	0	0	48	1.00
64146202--64146324	60	2.1	58	93	3	210	33	1	13	52	1.50
64146511--64146776	104	2.6	104	86	5	344	28	1	17	52	1.53
64146739--64146809	34	2.1	35	97	2	135	29	0	18	52	1.46
64146744--64146798	17	3.2	17	71	19	60	30	0	18	50	1.47
64154189--64154297	52	2.1	53	78	11	118	50	2	4	42	1.37
64155449--64155492	23	2.0	22	86	4	61	50	11	6	31	1.65
64161494--64161563	29	2.4	30	81	13	83	30	7	8	54	1.58
64161713--64161779	29	2.3	30	82	12	77	49	7	11	31	1.67
64163557--64163610	20	2.7	19	81	10	63	61	3	0	35	1.14
64163533--64163611	10	7.8	10	69	18	56	64	3	0	31	1.11
64163574--64163657	22	3.6	22	73	14	69	61	1	3	33	1.20
64170905--64170932	3	9.3	3	100	0	56	67	0	0	32	0.91
64173599--64173633	6	5.7	6	90	6	52	71	0	0	28	0.86
64173650--64173677	13	2.2	13	100	0	56	57	0	28	14	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64182189--64182232	23	2.0	22	90	4	70	59	2	2	36	1.23
64183493--64183520	14	2.0	14	100	0	56	50	35	0	14	1.43
64190362--64190430	27	2.6	27	93	4	113	40	8	1	49	1.43
64190495--64190547	27	2.0	27	92	0	88	30	26	30	13	1.94
64190812--64190846	3	11.7	3	100	0	70	34	0	0	65	0.93
64190812--64190956	12	11.8	12	66	15	64	36	1	6	55	1.33
64194855--64194907	27	2.0	27	96	0	97	11	30	28	30	1.91
64194934--64194963	11	2.7	11	94	0	51	0	3	10	86	0.67
64194960--64195032	27	2.7	27	91	2	119	45	1	8	45	1.42
64195413--64195450	19	2.1	18	90	5	58	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211