genome.fa.s21.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  156  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49033960--49034057	15	6.8	14	80	11	81	17	0	36	45	1.48
49033959--49034057	22	4.6	21	73	12	69	17	0	36	46	1.48
49033959--49034057	7	13.7	7	73	12	67	17	0	36	46	1.48
49035420--49035576	43	3.7	41	78	8	165	23	17	28	30	1.97
49035421--49035576	84	1.9	84	82	8	201	23	16	28	30	1.96
49038392--49038452	21	2.9	21	85	9	72	22	0	36	40	1.55
49038451--49038484	14	2.4	14	85	0	50	23	0	20	55	1.43
49040841--49040878	13	2.9	13	96	0	67	26	7	26	39	1.83
49041468--49041511	22	2.0	21	91	4	70	40	4	13	40	1.65
49041505--49041575	36	2.0	36	97	0	133	46	8	11	33	1.70
49049083--49049168	43	2.0	43	86	0	118	33	11	10	44	1.75
49049556--49049711	42	3.7	43	80	3	163	26	13	25	34	1.93
49055384--49055585	85	2.4	84	85	4	253	37	14	8	40	1.76
49055842--49055896	19	2.9	19	81	13	69	67	0	7	25	1.16
49056087--49056232	9	15.4	9	66	17	64	32	2	1	63	1.17
49056076--49056146	28	2.5	27	73	13	63	29	4	2	63	1.27
49056134--49056206	29	2.4	30	80	11	87	35	2	0	61	1.10
49056087--49056179	39	2.4	39	82	12	104	32	2	2	63	1.18
49056996--49057020	7	3.6	7	100	0	50	0	12	0	88	0.53
49061791--49061895	51	2.0	52	83	7	133	25	19	10	44	1.82
49061883--49061981	52	1.9	52	87	2	146	26	26	11	36	1.90
49074187--49074267	3	27.3	3	83	12	105	33	0	3	62	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49074413--49074476	19	3.4	19	75	14	53	29	10	3	56	1.49
49078279--49078328	23	2.2	23	88	0	73	44	16	12	28	1.83
49080538--49080564	13	2.1	13	100	0	54	48	22	0	29	1.51
49086890--49087011	23	5.2	23	85	3	163	40	19	11	27	1.86
49086879--49087011	48	2.8	46	84	4	169	39	20	12	27	1.88
49089217--49089241	13	1.9	13	100	0	50	40	24	4	32	1.73
49089509--49089563	9	5.6	10	75	12	51	30	3	1	63	1.22
49096809--49096845	9	4.1	9	92	0	65	29	10	13	45	1.77
49096900--49096930	9	3.4	9	90	0	53	38	22	12	25	1.90
49104014--49104089	9	8.4	9	86	0	107	43	22	7	26	1.80
49109410--49109435	12	2.2	12	100	0	52	34	0	0	65	0.93
49109643--49109671	12	2.4	12	100	0	58	24	0	0	75	0.80
49110707--49110817	48	2.3	48	85	1	161	25	15	24	35	1.94
49113875--49114059	101	1.8	101	86	5	266	23	17	27	30	1.97
49119862--49119892	2	15.5	2	93	0	53	48	3	48	0	1.17
49127312--49127349	14	2.8	14	92	4	51	28	2	10	57	1.45
49127320--49127349	14	2.1	14	100	0	60	30	0	13	56	1.37
49128027--49128066	19	2.3	18	87	12	57	42	0	2	55	1.13
49128646--49128679	1	34.0	1	87	0	50	94	5	0	0	0.32
49128644--49128679	19	1.9	19	94	5	65	91	8	0	0	0.41
49132980--49133013	14	2.3	15	90	5	52	41	11	2	44	1.56
49133658--49133687	14	2.1	14	93	0	51	30	40	10	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49135168--49135207	21	1.9	21	85	10	55	67	7	12	12	1.41
49138022--49138221	35	5.8	34	79	2	220	37	17	24	21	1.94
49138022--49138221	69	2.9	69	88	0	292	37	17	24	21	1.94
49138479--49138517	15	2.8	13	82	14	51	38	12	5	43	1.65
49145949--49145980	15	2.1	15	94	0	55	15	6	9	68	1.36
49147157--49147203	21	2.3	21	96	3	87	38	2	12	46	1.54
49157830--49157977	37	3.9	37	77	7	120	40	17	15	26	1.89
49160002--49160053	28	1.9	26	88	7	77	48	0	7	44	1.31
49164718--49164752	18	1.9	18	88	0	52	60	2	0	37	1.12
49164794--49164830	18	2.1	18	94	0	65	29	5	2	62	1.31
49164794--49164825	9	3.6	9	91	0	55	28	6	0	65	1.16
49167502--49167550	25	2.0	25	100	0	98	34	12	24	28	1.91
49169825--49169911	40	2.2	40	83	8	106	32	8	19	40	1.81
49170116--49170252	39	3.4	39	84	9	193	20	20	20	38	1.93
49170094--49170252	83	1.9	82	91	3	257	19	21	22	37	1.95
49170094--49170246	44	3.6	43	81	11	183	19	21	22	36	1.95
49179552--49179586	18	1.9	18	88	0	52	77	5	2	14	1.07
49181010--49181058	9	5.4	9	90	0	80	24	12	22	40	1.88
49182834--49182885	20	2.6	20	84	0	77	46	25	25	3	1.70
49189657--49189714	22	2.7	21	76	10	53	41	17	3	37	1.66
49189686--49189729	19	2.5	17	86	13	70	31	18	9	40	1.81
49191689--49191734	24	1.9	24	86	0	65	45	10	13	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49191689--49191741	24	2.2	24	82	0	61	45	11	11	32	1.76
49191768--49191797	15	2.0	15	93	0	51	20	16	6	56	1.62
49200984--49201060	32	2.4	32	84	0	109	44	6	24	24	1.77
49205480--49205557	32	2.4	32	82	0	111	43	6	25	24	1.78
49206143--49206178	5	7.2	5	93	0	63	41	19	16	22	1.90
49206680--49206732	16	2.8	19	76	18	58	45	0	30	24	1.54
49207087--49207123	9	4.1	9	85	0	56	32	8	13	45	1.73
49207763--49207804	22	1.9	22	85	0	57	57	9	4	28	1.51
49213479--49213673	61	3.2	60	76	15	179	52	5	3	38	1.43
49214839--49214904	26	2.5	26	82	4	80	19	31	15	33	1.93
49216277--49216412	41	3.3	41	91	0	200	27	27	19	26	1.99
49216714--49216805	41	2.2	41	98	0	175	25	26	22	26	2.00
49216316--49217491	398	3.0	398	99	0	2307	35	20	11	32	1.88
49217112--49217203	41	2.2	41	98	0	175	25	26	22	26	2.00
49217856--49217897	17	2.6	16	84	3	57	45	16	2	35	1.61
49219177--49219201	13	1.9	13	100	0	50	68	24	0	8	1.16
49224836--49224989	41	3.8	41	96	0	272	25	27	21	25	1.99
49226707--49226731	13	1.9	13	100	0	50	68	24	0	8	1.16
49236048--49236080	16	2.1	16	88	5	50	27	9	15	48	1.74
49240623--49240648	8	3.2	8	100	0	52	50	15	0	34	1.45
49247714--49247747	18	1.9	17	88	5	50	50	0	2	47	1.16
49250688--49250725	20	1.9	19	89	5	58	76	2	18	2	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49254081--49254119	20	2.0	19	85	5	51	48	0	0	51	1.00
49257486--49257515	15	2.0	15	93	0	51	40	10	0	50	1.36
49267665--49267719	15	3.5	15	78	9	65	43	7	0	49	1.30
49267668--49267710	16	2.7	15	79	10	50	44	9	0	46	1.35
49268513--49268554	16	2.6	17	81	11	52	38	0	0	61	0.96
49269519--49269564	24	1.9	24	82	8	58	17	4	4	73	1.15
49269603--49269695	24	3.6	25	75	22	79	41	0	1	56	1.06
49269611--49269694	26	3.2	26	75	21	93	42	0	0	57	0.99
49269608--49269701	19	4.9	19	75	19	90	40	0	0	59	0.97
49269653--49269699	20	2.4	20	83	16	71	38	0	0	61	0.96
49269756--49269828	10	7.8	9	76	13	67	38	0	0	61	0.96
49269756--49269828	38	1.9	38	91	5	121	38	0	0	61	0.96
49269742--49269897	28	5.5	27	72	17	95	37	1	3	57	1.26
49269941--49269999	32	1.9	30	89	6	91	45	1	1	50	1.21
49269961--49270010	21	2.3	22	82	10	66	48	2	0	50	1.12
49270161--49270345	86	2.2	85	94	1	325	29	3	24	42	1.71
49274573--49274678	30	3.6	30	77	2	115	28	22	24	24	2.00
49274607--49274678	29	2.4	29	79	9	74	30	23	23	22	1.99
49277358--49277399	20	2.3	18	88	12	59	35	7	0	57	1.26
49277413--49277473	27	2.2	28	82	2	79	37	0	0	62	0.96
49277618--49277716	20	4.9	21	72	22	88	58	0	2	39	1.10
49277588--49277727	57	2.3	61	77	11	146	54	1	2	42	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49277670--49277716	24	2.0	25	87	8	71	59	0	4	36	1.17
49279358--49279412	27	2.0	27	92	0	92	20	12	12	54	1.70
49287277--49287437	85	1.9	85	85	5	227	31	21	22	24	1.98
49287276--49287442	43	3.9	43	85	4	214	31	21	22	24	1.98
49287879--49287927	12	4.3	12	75	15	59	0	42	20	36	1.52
49287891--49287948	21	2.8	21	94	0	98	1	44	20	32	1.62
49287891--49287959	21	3.3	21	84	8	86	4	43	18	33	1.70
49304689--49304739	9	5.7	9	85	0	66	25	9	19	45	1.81
49305755--49305899	60	2.4	60	84	1	193	38	16	5	39	1.72
49310307--49310471	83	2.0	84	95	1	296	46	23	6	24	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211