genome.fa.s21.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  100  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31423522--31423567	24	1.9	24	82	8	58	47	0	0	52	1.00
31428220--31428272	24	2.2	24	93	0	88	30	33	16	18	1.94
31428517--31428631	45	2.6	45	84	2	142	38	13	23	25	1.91
31434071--31434137	34	1.9	35	90	3	109	32	7	13	46	1.71
31436857--31436907	6	8.5	6	97	0	75	39	0	60	0	0.97
31437718--31437757	17	2.3	17	86	4	53	35	2	0	62	1.09
31442755--31442792	15	2.5	15	91	4	58	7	0	2	89	0.57
31442755--31442784	9	3.3	9	95	0	51	6	0	3	90	0.56
31442756--31442807	24	2.1	24	85	3	68	13	1	1	82	0.84
31444169--31444408	27	8.9	27	76	10	179	35	20	29	15	1.93
31444169--31444408	54	4.5	53	78	8	218	35	20	29	15	1.93
31445154--31445192	21	1.9	20	89	5	60	33	7	25	33	1.84
31445328--31445352	13	1.9	13	100	0	50	48	0	4	48	1.20
31445356--31445403	11	4.6	11	80	12	57	60	0	0	39	0.97
31445348--31445405	14	4.4	14	73	22	54	60	0	0	39	0.97
31445360--31445397	20	2.0	20	94	5	69	60	0	0	39	0.97
31448755--31448785	5	6.0	5	96	3	53	19	0	0	80	0.71
31453982--31454055	29	2.6	28	87	4	103	37	18	20	22	1.94
31455440--31455470	2	15.5	2	93	0	53	3	0	45	51	1.17
31456995--31457066	23	3.0	24	78	15	78	55	1	0	43	1.08
31461015--31461113	19	5.2	18	75	15	76	66	1	1	31	1.05
31461014--31461113	29	3.5	28	76	12	71	67	1	1	31	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31461015--31461113	10	10.4	9	75	14	92	66	1	1	31	1.05
31462123--31462147	10	2.5	10	100	0	50	8	0	0	92	0.40
31463375--31463413	20	2.0	20	94	0	69	33	2	0	64	1.08
31463376--31463420	20	2.2	20	88	0	63	33	2	0	64	1.06
31466730--31467099	46	8.6	45	82	12	456	34	14	22	29	1.93
31466810--31466964	36	4.0	36	79	15	184	36	13	20	29	1.91
31466764--31467099	82	4.0	81	87	7	460	33	14	22	29	1.94
31466730--31467099	128	2.9	126	78	16	427	34	14	22	29	1.93
31467918--31467947	3	10.0	3	92	0	51	63	0	3	33	1.11
31469264--31469330	33	2.0	33	97	0	125	50	2	11	34	1.54
31469685--31469732	21	2.5	19	90	10	71	70	0	0	29	0.87
31469692--31469743	21	2.4	22	87	12	81	65	0	1	32	1.04
31473178--31473207	14	2.1	14	100	0	60	26	6	16	50	1.70
31477035--31477096	21	3.0	21	65	0	52	37	16	29	17	1.92
31477037--31477192	42	3.7	41	77	6	143	41	16	25	16	1.89
31480004--31480042	18	2.2	17	86	13	53	33	0	20	46	1.51
31480268--31480343	23	3.3	23	92	0	134	21	19	26	32	1.97
31488844--31488883	19	2.1	19	85	4	53	60	2	0	37	1.11
31490166--31490215	21	2.5	21	84	12	61	38	2	8	52	1.43
31493455--31493577	35	3.5	35	76	0	120	28	15	22	33	1.95
31503805--31503883	33	2.5	31	77	20	90	29	16	6	48	1.71
31511922--31512096	41	4.3	40	79	8	165	32	26	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31511941--31512097	41	3.8	41	85	1	190	31	27	20	21	1.98
31512240--31512390	61	2.4	63	85	5	207	41	15	11	31	1.83
31522807--31522997	78	2.4	78	83	3	233	30	8	13	47	1.73
31531787--31531820	10	3.3	10	84	8	50	8	11	11	67	1.42
31533618--31533658	6	6.5	6	94	5	64	70	0	14	14	1.16
31536934--31537001	34	2.0	34	100	0	136	44	5	26	23	1.76
31542325--31542422	42	2.3	42	92	0	160	26	25	10	37	1.88
31554784--31554825	13	3.2	13	86	6	50	71	7	0	21	1.09
31555031--31555082	20	2.5	20	76	14	52	61	5	1	30	1.30
31555134--31555180	17	2.8	17	68	12	51	63	2	2	31	1.18
31555168--31555222	24	2.3	24	78	6	58	54	7	1	36	1.39
31555611--31555640	7	4.4	7	91	8	53	73	0	0	26	0.84
31555911--31556006	19	4.8	19	88	5	129	39	16	7	36	1.77
31555911--31556006	38	2.4	39	91	6	149	39	16	7	36	1.77
31556426--31556458	15	2.1	16	94	5	59	21	0	6	72	1.05
31557964--31558002	20	2.0	20	100	0	78	25	10	5	58	1.51
31558069--31558105	18	2.1	17	90	5	56	16	0	5	78	0.93
31558073--31558135	6	10.5	6	76	6	56	15	3	6	74	1.15
31559668--31559713	16	2.9	16	78	12	51	36	0	4	58	1.18
31570429--31570686	101	2.6	100	88	5	360	31	14	26	27	1.95
31570427--31570623	33	5.8	33	73	7	128	30	13	26	28	1.94
31570499--31570641	33	4.3	34	71	8	105	31	15	24	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31570562--31570689	33	3.9	33	69	14	102	32	14	25	28	1.94
31574879--31574912	4	8.8	4	93	6	61	50	0	0	50	1.00
31576239--31576275	9	4.1	9	92	0	65	29	10	13	45	1.77
31581373--31581965	44	13.7	43	71	15	252	27	25	19	28	1.99
31581469--31581655	83	2.3	83	86	0	266	31	22	18	26	1.97
31581289--31581703	44	9.7	43	71	13	167	28	24	19	28	1.98
31581462--31581611	40	3.6	39	71	11	111	31	23	18	27	1.97
31581629--31581963	89	3.8	89	73	15	297	25	25	20	27	1.99
31581546--31581953	172	2.4	170	83	6	439	26	25	18	28	1.98
31581268--31581874	299	2.0	300	90	2	943	28	23	19	28	1.98
31581641--31581965	172	1.9	173	92	1	546	26	25	20	28	1.99
31594821--31594929	37	2.9	37	94	0	182	26	30	19	23	1.98
31595138--31595771	47	13.1	47	84	6	809	26	29	12	32	1.93
31595138--31595771	245	2.6	238	86	5	830	26	29	12	32	1.93
31595138--31595771	292	2.2	292	97	0	1178	26	29	12	32	1.93
31599949--31600149	51	4.0	51	78	8	230	30	28	17	23	1.97
31599959--31600141	101	1.8	102	90	3	298	31	27	17	23	1.97
31601833--31601932	36	2.8	36	81	3	121	24	24	24	28	2.00
31605911--31606013	28	3.7	27	84	10	136	29	24	22	24	1.99
31605913--31606018	56	1.9	56	88	7	162	29	24	22	23	1.99
31606442--31606803	80	4.5	81	83	7	443	20	16	18	43	1.88
31606442--31606803	107	3.4	106	84	6	446	20	16	18	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31606442--31606803	27	13.5	27	84	6	434	20	16	18	43	1.88
31611701--31611748	24	2.0	25	83	4	62	62	10	0	27	1.27
31611874--31611902	15	1.9	15	100	0	58	79	0	0	20	0.74
31612845--31612876	3	10.3	3	93	6	55	65	0	0	34	0.93
31612978--31613004	14	1.9	14	100	0	54	51	7	18	22	1.70
31614273--31614313	22	2.0	22	85	9	59	26	0	2	70	0.99
31614273--31614320	25	2.0	22	84	11	60	27	0	4	68	1.07
31615656--31615766	55	2.0	55	84	6	145	20	23	31	24	1.98
31624163--31624241	31	3.0	24	75	22	86	44	16	6	32	1.73
31625304--31625406	43	2.4	43	80	0	116	32	18	21	28	1.97
31628092--31628147	28	2.0	28	86	6	78	37	25	19	17	1.94
31628742--31628840	39	2.6	38	85	1	126	49	9	4	37	1.53
31654750--31654840	35	2.6	35	82	3	112	17	14	35	32	1.90
31659042--31659151	20	5.6	20	68	10	73	36	20	31	11	1.88
31670361--31670442	35	2.3	34	78	12	85	48	15	3	31	1.63
31670831--31670887	20	2.9	20	71	21	57	42	14	26	17	1.87
31670831--31670934	40	2.6	39	84	4	127	43	16	24	16	1.87
31675187--31675221	17	2.0	18	88	5	54	28	5	2	62	1.32
31675865--31675896	3	10.7	3	93	0	55	62	0	37	0	0.95
31679901--31680003	43	2.4	45	78	14	101	33	23	18	25	1.97
31684441--31684466	12	2.2	12	100	0	52	57	0	0	42	0.98
31685311--31685366	6	9.3	6	96	0	85	16	26	0	57	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31686780--31686820	21	1.9	21	90	5	64	7	29	0	63	1.21
31694929--31695160	50	4.7	50	81	0	232	21	25	20	31	1.98
31699011--31699043	16	2.0	17	88	5	50	27	6	18	48	1.71
31700127--31700179	28	1.9	27	88	3	79	71	11	9	7	1.30
31700127--31700186	28	2.2	27	84	3	75	70	11	8	10	1.35
31702994--31703020	14	1.9	14	100	0	54	44	7	0	48	1.31
31705116--31705148	14	2.4	14	94	0	57	12	30	0	57	1.35
31711850--31711885	14	2.6	14	90	0	54	33	19	16	30	1.94
31721065--31721159	48	2.0	48	89	4	147	31	13	14	40	1.85
31747638--31747662	3	8.3	3	100	0	50	36	32	0	32	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211