genome.fa.s21.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  153  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48163596--48163657	23	2.6	23	87	5	88	59	0	1	38	1.07
48165872--48165911	20	2.0	20	90	0	62	27	10	12	50	1.72
48165857--48165923	34	1.9	35	90	3	109	31	8	13	46	1.74
48165851--48165927	14	5.0	15	71	20	52	33	9	14	42	1.77
48165913--48165991	33	2.4	32	83	4	95	26	11	17	44	1.83
48166555--48166683	64	2.0	66	83	8	167	13	23	16	46	1.83
48198713--48198770	27	2.2	27	78	3	64	44	5	3	46	1.42
48199956--48200122	88	1.9	89	92	2	282	33	16	23	26	1.95
48208193--48208226	17	2.0	17	100	0	68	41	5	0	52	1.25
48209307--48209351	22	2.0	22	86	0	63	53	17	11	17	1.72
48211682--48211723	16	2.7	16	77	3	50	54	2	16	26	1.54
48213103--48213165	15	4.3	15	80	8	76	14	7	39	38	1.75
48214042--48214109	34	2.0	34	91	0	109	29	20	19	30	1.97
48215760--48215812	25	2.2	24	86	3	70	37	22	22	16	1.94
48215789--48215914	64	2.0	64	82	0	153	33	22	21	23	1.97
48217355--48217414	31	1.9	31	86	0	84	31	13	10	45	1.76
48218372--48218440	34	2.0	34	100	0	138	20	20	11	47	1.80
48219603--48219636	18	1.9	18	88	5	52	61	8	0	29	1.26
48222128--48222822	154	4.6	151	84	7	901	30	10	7	51	1.63
48222139--48222822	309	2.3	307	88	4	1014	30	9	7	52	1.62
48223259--48223288	15	2.0	15	93	0	51	16	10	0	73	1.09
48226387--48226423	16	2.4	17	82	17	53	67	0	2	29	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48230472--48230512	21	2.0	21	95	0	73	34	12	26	26	1.92
48230724--48230763	20	2.0	20	90	0	62	30	20	15	35	1.93
48238872--48239810	89	10.5	89	87	3	1190	30	17	24	26	1.97
48238872--48239810	449	2.1	449	88	3	1365	30	17	24	26	1.97
48238872--48239786	44	20.4	45	71	6	593	31	18	24	26	1.97
48240739--48240768	15	2.0	15	93	0	51	13	10	3	73	1.21
48267963--48268002	14	2.9	14	84	0	53	32	7	17	42	1.77
48267971--48268037	35	1.9	35	87	3	100	31	10	13	44	1.77
48267986--48268025	20	2.0	20	85	0	53	27	12	12	47	1.77
48269376--48269443	27	2.5	27	79	9	75	51	20	2	25	1.61
48274173--48274254	42	2.0	42	95	0	146	17	25	24	32	1.96
48277532--48277556	7	3.6	7	100	0	50	16	40	16	28	1.89
48284022--48284056	17	2.1	17	88	0	52	45	5	2	45	1.41
48295411--48295557	76	1.9	76	87	2	215	21	24	13	40	1.90
48300112--48300297	47	3.8	48	81	4	223	19	31	22	27	1.98
48305517--48305675	45	3.6	45	76	10	121	36	25	12	25	1.91
48305560--48305706	45	3.3	45	76	4	136	36	22	12	28	1.91
48305556--48305720	90	1.8	90	82	7	210	35	23	12	28	1.91
48307409--48307453	23	2.0	23	95	0	81	37	4	13	44	1.64
48307605--48307639	16	2.2	16	89	0	52	2	14	17	65	1.38
48309270--48309494	90	2.5	87	86	7	317	37	20	8	33	1.83
48309557--48309705	28	5.4	27	76	10	131	60	0	5	33	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48309553--48309679	9	13.8	10	69	21	66	62	0	3	32	1.19
48309552--48309726	19	9.6	18	70	15	103	61	1	5	32	1.27
48309553--48309724	55	3.1	55	78	13	174	60	1	5	32	1.28
48309584--48309681	10	10.8	8	72	17	52	61	1	4	33	1.22
48309552--48309680	37	3.6	35	79	14	122	62	0	3	32	1.18
48309955--48310023	36	1.9	36	85	5	95	39	1	0	59	1.06
48310050--48310268	88	2.5	88	82	5	271	33	7	20	38	1.81
48312276--48312313	18	2.1	18	100	0	76	26	21	23	28	1.99
48315735--48315767	2	17.0	2	93	6	59	48	0	0	51	1.00
48315736--48315786	8	6.2	8	86	8	50	54	1	0	43	1.11
48316790--48316858	31	2.3	29	85	5	84	46	15	15	21	1.84
48318235--48318270	16	2.3	16	90	4	56	61	5	0	33	1.19
48318273--48318306	14	2.4	14	90	9	52	32	8	0	58	1.29
48324458--48324486	6	4.8	6	100	0	58	48	0	17	34	1.47
48328554--48328585	15	2.1	15	100	0	64	31	31	9	28	1.88
48337895--48337951	24	2.4	24	85	5	71	19	29	19	31	1.96
48347051--48347087	9	4.1	9	85	0	56	48	13	8	29	1.71
48355677--48355774	49	2.0	50	93	2	171	41	16	18	23	1.89
48366524--48366639	44	2.7	43	78	14	139	22	16	30	31	1.96
48368513--48368545	17	2.0	17	88	5	50	36	0	0	63	0.95
48383031--48383091	30	2.0	30	100	0	122	29	16	9	44	1.80
48391444--48391506	3	21.3	3	76	20	62	31	1	3	63	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48392064--48392101	12	3.1	12	85	14	51	13	0	5	81	0.85
48392060--48392101	17	2.4	19	84	11	54	14	0	4	80	0.86
48392060--48392101	18	2.4	18	84	11	52	14	0	4	80	0.86
48398169--48398242	34	2.2	34	97	0	139	25	17	12	44	1.83
48401908--48401950	17	2.5	17	81	7	52	51	2	25	20	1.60
48402179--48402278	34	3.1	34	65	16	95	42	6	17	35	1.73
48402179--48402307	62	2.1	61	94	1	222	41	4	17	36	1.71
48411936--48411962	13	2.1	13	100	0	54	33	29	7	29	1.85
48414684--48414719	19	1.9	18	88	5	54	30	2	16	50	1.60
48415866--48415916	22	2.3	22	100	0	102	52	21	5	19	1.66
48419895--48419946	20	2.7	19	82	14	70	38	9	0	51	1.35
48420520--48420596	33	2.3	34	86	2	111	44	27	6	22	1.77
48425552--48425597	22	2.1	22	84	8	58	39	2	0	58	1.10
48431743--48431769	14	1.9	14	100	0	54	33	22	0	44	1.53
48443660--48443686	2	13.5	2	100	0	54	51	48	0	0	1.00
48450068--48450225	42	3.8	42	83	1	183	40	17	25	17	1.90
48450061--48450232	21	8.2	21	66	1	58	40	17	23	18	1.91
48450198--48450240	21	2.0	21	86	8	61	46	16	16	20	1.84
48455504--48455567	32	2.0	32	100	0	128	34	9	15	40	1.80
48455970--48456040	13	5.5	13	82	0	88	38	28	5	28	1.79
48455970--48456040	26	2.7	26	84	0	97	38	28	5	28	1.79
48469492--48469546	27	2.0	27	96	0	101	38	27	3	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48470257--48470317	25	2.5	25	81	5	72	37	19	21	21	1.94
48475742--48475784	13	3.5	13	81	18	65	48	16	0	34	1.46
48475740--48475785	23	2.0	23	100	0	92	47	17	0	34	1.48
48475744--48475793	23	2.2	23	89	7	75	54	14	0	32	1.40
48476873--48476915	18	2.5	17	76	3	50	34	0	2	62	1.08
48479595--48479676	44	1.9	44	85	9	116	17	4	23	54	1.61
48488768--48488797	2	15.0	2	100	0	60	50	0	0	50	1.00
48490968--48491052	30	2.9	30	79	10	86	42	2	25	29	1.68
48494167--48494269	34	3.0	35	76	8	120	19	24	25	31	1.98
48497215--48497256	21	2.0	21	90	9	68	23	9	4	61	1.45
48498117--48498200	22	3.5	22	69	17	69	33	1	11	53	1.45
48498099--48498200	50	2.0	50	100	0	204	33	1	13	50	1.53
48505613--48505685	25	3.0	24	80	11	76	30	19	26	24	1.98
48505625--48505694	25	2.8	25	80	0	77	30	22	25	21	1.99
48505623--48505734	25	4.5	25	70	15	63	34	21	21	22	1.97
48505727--48505833	24	4.4	25	73	16	91	29	20	28	21	1.98
48512517--48512545	15	1.9	15	100	0	58	27	0	17	55	1.42
48513438--48513658	110	2.0	110	97	0	415	36	11	16	36	1.84
48525187--48525238	25	2.0	26	88	7	79	46	5	0	48	1.26
48525236--48525268	16	2.0	17	88	5	50	81	9	3	6	0.95
48525689--48525735	3	15.7	3	100	0	94	34	0	0	65	0.93
48525686--48525762	12	6.4	12	81	11	77	32	1	7	58	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48526473--48526517	18	2.5	18	85	0	63	28	4	46	20	1.69
48531237--48531365	25	5.0	23	73	18	87	50	2	7	39	1.44
48531237--48531381	28	5.4	27	78	13	167	48	2	8	40	1.45
48531237--48531381	52	2.8	52	85	8	204	48	2	8	40	1.45
48531237--48531381	24	5.5	25	79	12	130	48	2	8	40	1.45
48531422--48531466	18	2.5	18	85	7	56	71	8	0	20	1.12
48532250--48532319	4	17.5	4	72	26	51	1	27	0	71	0.94
48532243--48532319	14	5.2	14	77	14	66	1	28	0	70	0.96
48532227--48532308	34	2.4	35	82	10	98	0	30	0	69	0.89
48532235--48532339	42	2.4	43	80	10	117	0	34	0	64	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211