genome.fa.s21.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  149  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46925487--46925530	5	8.8	5	100	0	88	40	0	20	38	1.53
46927713--46927911	69	2.9	69	89	5	296	36	17	21	24	1.95
46927708--46927962	69	3.7	68	85	4	291	35	18	23	22	1.96
46936424--46936517	49	1.9	49	89	4	145	43	7	25	23	1.79
46937845--46937988	25	5.8	25	73	15	118	23	22	21	31	1.98
46937831--46937992	50	3.2	50	85	1	209	24	21	22	32	1.98
46946432--46946464	17	1.9	17	93	0	57	12	3	9	75	1.14
46947815--46947855	12	3.3	13	76	10	50	41	0	2	56	1.13
46947815--46947863	25	1.9	25	84	12	64	40	0	2	57	1.10
46949608--46949665	29	2.0	30	83	10	75	44	0	31	24	1.54
46951239--46951421	90	2.0	90	95	0	330	21	26	14	36	1.93
46951355--46951487	66	2.0	66	100	0	266	25	25	16	32	1.96
46957224--46957337	51	2.2	51	96	0	219	29	18	12	39	1.87
46957365--46957445	31	2.6	33	74	16	82	49	17	4	28	1.67
46959875--46960089	108	2.0	107	93	0	367	32	20	13	33	1.92
46960914--46960948	10	3.2	11	88	12	54	17	37	0	45	1.48
46960946--46960985	20	2.0	20	100	0	80	35	35	0	30	1.58
46960966--46961071	51	2.1	51	91	3	169	28	24	0	46	1.59
46963348--46963433	43	2.0	45	90	4	140	38	0	12	48	1.41
46963439--46963996	23	23.2	27	64	28	122	47	24	0	27	1.56
46963451--46963545	23	4.2	23	89	6	142	48	23	0	28	1.51
46963451--46964077	68	8.9	66	75	19	381	46	24	0	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46963623--46963723	50	2.0	51	88	5	152	47	25	0	26	1.52
46963462--46964027	118	4.7	118	88	7	735	47	24	0	27	1.57
46963685--46963978	23	12.9	20	76	16	147	46	24	1	27	1.59
46963736--46963822	21	3.2	30	65	29	77	45	26	1	26	1.60
46963451--46964067	186	3.3	185	84	11	754	47	24	0	28	1.58
46964025--46964067	23	2.0	20	90	9	59	46	20	2	30	1.63
46964080--46964299	118	1.9	118	92	1	372	39	9	9	41	1.70
46964275--46964316	17	2.4	18	80	4	50	42	9	2	45	1.49
46967294--46967521	126	1.8	126	87	0	339	34	22	13	29	1.93
46970512--46970682	81	2.1	80	90	1	261	28	21	17	32	1.96
46972073--46972099	5	5.4	5	100	0	54	59	0	0	40	0.98
46972451--46972485	16	2.1	17	89	5	54	31	0	0	68	0.90
46974164--46974227	27	2.6	25	78	12	69	46	23	10	18	1.80
46978243--46978380	40	3.5	40	80	6	165	30	25	17	26	1.97
46979263--46979350	4	21.5	4	78	15	83	1	25	1	72	0.98
46979266--46979355	35	2.6	33	82	8	99	1	23	2	73	1.01
46979263--46979350	39	2.3	39	88	4	124	1	25	1	72	0.98
46985540--46985693	42	3.7	42	93	0	254	46	5	6	41	1.54
46985538--46985721	42	4.5	40	87	6	178	45	4	5	44	1.48
46992531--46992680	44	3.4	44	94	0	264	32	13	23	31	1.93
47001940--47002430	245	2.0	245	95	0	892	24	20	15	39	1.91
47003646--47003689	7	6.3	7	94	0	61	22	29	4	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47015087--47015135	24	2.0	24	84	0	62	30	4	34	30	1.76
47020828--47020863	18	2.0	18	94	0	63	33	8	0	58	1.28
47039767--47039820	22	2.3	24	78	15	60	35	3	7	53	1.47
47055192--47055263	28	2.6	27	80	6	74	34	13	22	29	1.93
47057913--47058079	20	8.4	20	68	4	95	34	20	32	11	1.89
47057945--47058098	79	1.9	80	85	1	211	34	20	32	12	1.90
47062131--47062345	41	5.2	41	93	0	349	28	23	21	26	1.99
47063970--47064021	28	1.9	26	92	7	86	46	7	0	46	1.31
47067043--47067086	23	2.0	23	86	4	63	38	4	18	38	1.71
47067031--47067100	22	3.3	22	76	11	65	32	5	18	42	1.74
47067461--47067500	20	2.0	21	90	5	64	70	5	15	10	1.32
47073373--47073495	43	2.9	42	75	8	122	32	22	20	24	1.98
47076188--47076217	14	2.1	14	93	0	51	30	6	20	43	1.77
47076412--47076480	24	2.7	24	77	20	68	56	0	2	40	1.14
47076435--47076486	24	2.1	25	82	10	63	59	0	1	38	1.08
47082255--47082299	23	2.0	23	82	8	56	33	4	11	51	1.58
47082416--47082617	74	2.7	75	80	6	194	33	6	19	40	1.77
47082872--47082950	41	1.9	41	94	0	140	26	18	24	30	1.98
47086834--47086890	19	3.0	19	70	10	53	19	24	24	31	1.98
47094939--47094972	17	2.0	17	88	0	50	38	2	0	58	1.13
47094921--47094989	36	1.9	35	85	11	95	39	1	4	55	1.29
47096476--47096524	12	3.8	13	86	8	57	75	0	24	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47096487--47096523	6	6.2	6	93	0	65	81	0	18	0	0.70
47096481--47096530	18	2.9	17	77	8	57	78	0	22	0	0.76
47096808--47096848	18	2.3	18	87	8	57	43	0	17	39	1.49
47101947--47101987	20	1.9	23	85	14	61	19	24	2	53	1.57
47101974--47102009	18	2.0	18	94	0	63	30	30	5	33	1.81
47101969--47102015	18	2.9	16	79	14	60	29	29	4	36	1.77
47105445--47105520	30	2.5	30	89	0	107	28	17	22	31	1.96
47107677--47108001	91	3.6	91	85	1	418	32	26	16	24	1.96
47108252--47108297	13	3.5	13	78	21	60	32	6	15	45	1.71
47108755--47108798	21	2.1	21	100	0	88	25	0	22	52	1.48
47109391--47109582	50	3.8	50	83	0	222	26	21	30	21	1.98
47116435--47116560	61	2.1	61	88	4	184	30	6	19	44	1.75
47126177--47126243	29	2.3	30	82	10	77	32	14	7	44	1.74
47126792--47126854	30	2.1	30	84	0	81	25	1	14	58	1.45
47126976--47127006	11	2.8	11	90	0	53	67	0	0	32	0.91
47128860--47128929	32	2.2	30	82	10	77	52	4	1	41	1.30
47130217--47130287	29	2.4	29	74	6	72	42	5	21	30	1.76
47131292--47131319	12	2.3	12	100	0	56	50	7	10	32	1.64
47132580--47132610	10	3.0	10	90	9	53	80	9	0	9	0.90
47132582--47132628	11	4.2	11	86	5	67	85	6	0	8	0.75
47132582--47132628	12	4.1	12	89	5	71	85	6	0	8	0.75
47132582--47132628	23	2.0	23	91	0	76	85	6	0	8	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47134880--47134921	17	2.4	18	80	7	52	57	4	23	14	1.56
47137907--47137934	12	2.3	12	100	0	56	50	7	10	32	1.64
47141438--47141554	59	2.0	59	93	3	200	53	8	5	32	1.53
47144199--47144235	5	7.2	5	93	6	65	40	0	0	59	0.97
47144196--47144234	16	2.4	16	95	0	69	43	0	0	56	0.99
47148604--47148674	33	2.2	33	100	0	142	23	9	11	54	1.65
47150395--47150456	22	2.8	22	80	17	74	56	1	1	40	1.19
47150436--47150467	17	1.9	17	93	6	57	56	0	3	40	1.15
47174973--47175004	16	2.0	16	93	0	55	31	18	21	28	1.97
47179829--47179899	8	8.0	9	75	12	67	70	1	2	25	1.09
47179831--47179897	18	3.8	17	83	14	75	71	1	2	23	1.08
47179846--47179936	10	9.5	10	68	8	64	67	2	4	26	1.21
47179848--47179906	18	3.2	17	81	11	64	69	1	5	23	1.18
47179866--47179936	20	3.7	20	83	3	76	67	2	4	25	1.22
47180150--47180270	19	6.4	18	66	15	66	38	3	0	57	1.21
47180205--47180241	18	2.1	18	89	0	56	48	2	0	48	1.15
47181094--47181200	52	2.0	53	80	10	121	31	0	1	65	1.10
47181652--47181680	12	2.3	13	94	5	51	75	0	0	24	0.80
47183397--47183479	41	2.0	41	97	0	157	32	9	22	34	1.87
47184457--47184522	33	2.0	33	90	0	105	19	28	24	27	1.99
47188779--47188881	42	2.5	42	76	6	102	40	14	24	20	1.90
47196987--47197172	26	7.2	26	77	2	167	31	28	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47196987--47197172	52	3.6	52	80	2	187	31	28	16	23	1.96
47198016--47198059	22	2.0	22	87	12	65	52	9	0	38	1.33
47198017--47198059	21	2.0	21	91	8	70	53	9	0	37	1.33
47207669--47207729	17	3.6	17	88	0	95	19	29	37	13	1.90
47221717--47222043	27	12.1	27	80	6	324	20	15	18	45	1.85
47225298--47225442	41	3.5	41	86	0	200	32	15	31	20	1.94
47233536--47233645	40	2.8	40	83	5	107	17	32	21	28	1.96
47233560--47233645	20	4.3	19	77	14	84	17	34	20	26	1.95
47240253--47240282	15	1.9	16	93	6	53	16	10	26	46	1.78
47240285--47240379	29	3.3	29	68	11	70	26	24	16	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211