genome.fa.s21.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  105  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32790085--32790135	23	2.2	23	89	0	75	41	17	7	33	1.79
32792389--32792418	13	2.3	13	100	0	60	6	0	40	53	1.27
32795407--32795641	27	8.8	27	80	5	246	43	17	19	19	1.88
32795407--32795641	54	4.4	54	82	4	271	43	17	19	19	1.88
32795407--32795628	106	2.1	107	86	2	304	44	16	19	19	1.87
32795839--32795889	26	2.0	26	88	0	75	13	19	27	39	1.90
32795988--32796042	27	2.0	28	92	3	94	21	25	23	29	1.99
32795988--32796074	30	3.0	30	85	6	99	25	25	21	27	2.00
32796094--32796141	25	1.9	25	82	0	60	20	8	20	50	1.74
32812929--32812969	22	1.9	22	85	5	57	65	0	2	31	1.05
32813666--32813725	16	3.6	16	71	6	57	21	5	3	70	1.22
32815982--32816028	22	2.2	22	85	11	62	40	21	14	23	1.90
32822664--32822704	18	2.3	18	91	0	64	29	0	19	51	1.47
32823248--32823290	22	2.0	22	90	0	68	32	16	23	27	1.96
32823350--32823457	51	2.1	51	81	6	130	29	8	16	45	1.77
32830664--32830794	27	4.9	27	84	5	158	23	15	20	40	1.90
32830663--32830794	54	2.4	54	87	2	176	23	15	20	40	1.90
32830652--32830804	27	5.7	27	72	16	95	23	15	20	41	1.90
32834794--32834858	20	3.2	20	80	8	69	20	32	13	33	1.91
32840603--32840696	29	3.1	29	67	8	71	26	25	11	36	1.90
32840608--32840758	61	2.5	61	90	0	221	27	26	11	33	1.92
32840617--32840719	32	3.3	32	71	8	104	29	29	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32840650--32840755	29	3.6	29	72	7	95	25	27	14	33	1.94
32852089--32852133	14	3.1	14	81	6	54	37	2	2	57	1.23
32854158--32854207	16	2.8	18	82	8	59	34	0	2	64	1.05
32854186--32854268	27	3.1	28	76	10	66	37	2	2	57	1.25
32854158--32854269	9	12.4	9	67	16	54	34	1	1	61	1.17
32857499--32857608	40	2.8	40	83	1	132	36	20	20	21	1.95
32857656--32857982	41	8.0	41	84	4	396	20	20	29	29	1.98
32857656--32857982	121	2.7	122	84	5	412	20	20	29	29	1.98
32857673--32858014	162	2.1	162	82	4	413	21	20	27	29	1.98
32858389--32858461	21	3.4	21	66	19	53	27	1	31	39	1.65
32858452--32858506	21	2.6	20	83	11	65	21	0	47	30	1.51
32858459--32858516	14	4.1	14	79	0	53	20	0	46	32	1.51
32858459--32858506	21	2.3	21	88	0	69	20	0	50	29	1.49
32858900--32858945	18	2.4	19	89	7	67	78	4	2	15	1.01
32861410--32861714	168	1.8	167	81	2	378	28	10	15	45	1.79
32861913--32862162	86	2.9	86	83	3	279	33	9	15	42	1.79
32862174--32862258	40	2.1	40	84	4	109	29	7	14	49	1.69
32863660--32863867	43	4.8	43	86	1	283	27	17	28	26	1.97
32863666--32863829	87	1.9	86	89	1	256	28	15	28	28	1.96
32865670--32865715	18	2.6	18	89	6	67	43	0	0	56	0.99
32865656--32865738	26	3.1	26	79	8	78	39	1	1	57	1.14
32865642--32865739	9	10.7	9	72	15	60	37	2	1	59	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32866523--32866578	27	2.0	28	83	10	71	50	0	7	42	1.30
32866778--32866851	38	1.9	38	88	0	112	52	12	9	25	1.68
32873666--32873713	18	2.6	18	83	3	51	8	4	39	47	1.53
32874034--32874393	182	2.0	181	86	2	499	29	19	17	33	1.95
32874315--32875119	181	4.4	181	89	0	1160	28	20	17	33	1.96
32874274--32875119	45	18.7	45	70	11	327	28	20	17	33	1.96
32875921--32875978	6	9.8	6	80	15	59	0	18	0	81	0.70
32875922--32875978	11	5.4	11	70	8	55	0	17	0	82	0.67
32875923--32875974	16	3.2	16	81	7	61	0	19	0	80	0.71
32878476--32878720	75	3.3	75	95	0	445	38	23	12	25	1.89
32886926--32886972	18	2.6	18	76	10	51	48	2	10	38	1.50
32887054--32887115	9	7.0	9	71	21	51	61	1	1	35	1.16
32887259--32887296	20	2.0	19	90	10	60	55	0	23	21	1.44
32889115--32889199	12	6.8	12	81	7	89	58	2	8	30	1.40
32889115--32889205	3	30.3	3	76	8	78	60	2	7	29	1.36
32890626--32890707	40	2.0	40	85	0	110	24	20	24	30	1.99
32890715--32891209	44	11.5	44	72	10	242	26	21	21	30	1.98
32890704--32891209	87	5.9	86	72	11	349	26	21	20	30	1.98
32890883--32891165	124	2.2	124	85	4	363	27	20	20	31	1.97
32896938--32897207	124	2.2	125	81	10	315	28	19	20	31	1.97
32899977--32900069	12	7.6	12	83	5	89	60	2	7	30	1.36
32899977--32900069	3	31.3	3	74	10	75	60	2	7	30	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32903808--32904916	153	7.3	153	86	5	1485	52	7	9	31	1.60
32903807--32904916	461	2.4	461	88	4	1658	52	7	9	31	1.60
32905045--32905088	18	2.3	18	84	7	52	27	0	4	68	1.09
32918417--32918459	22	1.9	23	90	4	70	32	9	2	55	1.44
32919197--32919254	29	2.2	25	87	12	80	65	0	3	31	1.09
32933308--32933350	15	2.8	15	86	10	52	74	11	0	13	1.07
32935530--32935580	15	3.4	15	78	5	50	31	1	5	60	1.31
32935842--32935884	12	3.6	12	84	6	52	39	2	2	55	1.25
32938108--32938158	25	2.0	25	85	7	68	58	15	3	21	1.53
32940381--32940469	27	3.3	27	82	0	115	22	22	11	43	1.84
32942551--32942606	21	2.8	19	89	10	94	37	10	16	35	1.83
32942551--32942629	19	3.7	22	80	14	78	36	8	16	37	1.80
32942834--32942878	23	2.0	23	86	0	63	24	0	13	62	1.31
32943263--32943311	21	2.4	21	83	10	57	40	6	2	51	1.38
32943314--32943339	8	3.2	8	100	0	52	15	0	0	84	0.62
32943330--32943387	23	2.4	23	78	16	64	32	6	1	58	1.35
32943347--32943390	23	2.0	22	90	4	70	34	6	2	56	1.38
32947261--32947289	9	3.2	9	100	0	58	79	0	0	20	0.74
32949712--32950740	45	22.9	46	85	3	1228	29	15	23	30	1.96
32949712--32950734	90	11.4	90	89	0	1352	29	15	23	30	1.96
32949712--32950740	135	7.6	135	88	0	1355	29	15	23	30	1.96
32950835--32950953	44	2.7	44	85	0	148	26	21	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32951494--32951549	21	2.8	19	87	10	85	37	12	14	35	1.84
32951494--32951572	19	3.7	22	80	14	69	36	10	15	37	1.81
32952268--32952311	23	2.0	22	90	4	70	34	6	2	56	1.38
32957586--32957718	32	4.2	32	79	13	143	28	9	18	44	1.80
32957597--32957724	61	2.1	63	85	2	170	30	9	17	42	1.81
32957597--32957729	31	4.3	31	85	2	169	30	9	18	42	1.80
32957597--32957752	31	5.0	31	83	6	133	29	8	18	43	1.79
32957860--32958007	43	3.4	43	88	0	215	25	16	25	32	1.96
32974978--32975003	6	4.3	6	100	0	52	15	34	15	34	1.89
32978890--32978927	13	3.0	12	88	11	58	71	0	2	26	1.00
32979904--32979955	9	5.9	9	84	6	54	34	1	0	63	1.06
32979913--32979990	17	4.6	17	77	0	75	37	2	0	60	1.11
32981294--32981336	3	14.7	3	95	4	79	69	0	0	30	0.88
32981621--32981697	37	2.1	39	83	11	99	53	1	7	37	1.38
32982252--32982312	17	3.4	17	70	20	52	36	16	9	37	1.82
32982259--32982311	21	2.7	21	77	16	69	37	13	11	37	1.80
32982259--32982312	19	2.8	19	74	20	67	37	14	11	37	1.82
32983095--32983645	44	12.5	44	81	7	323	28	25	16	28	1.97
32982977--32983381	176	2.3	176	85	1	535	28	23	17	30	1.97
32983311--32983646	88	3.8	87	90	4	491	29	27	16	26	1.97
32983311--32983645	132	2.5	131	87	3	503	29	27	16	26	1.96
32986702--32986734	9	3.8	9	88	4	50	42	15	21	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32995450--32995660	111	1.9	111	88	0	314	28	28	18	25	1.98
33001378--33001680	151	2.0	151	86	1	428	27	29	17	25	1.97
33008423--33008531	43	2.6	42	80	7	123	32	25	16	25	1.96
33008393--33008534	43	3.3	43	74	11	121	30	25	15	28	1.96
33010866--33010914	20	2.5	19	83	3	53	36	36	2	24	1.67
33019673--33019734	17	3.6	17	76	22	58	29	16	24	30	1.96
33019675--33019745	34	2.1	34	84	5	90	29	18	22	29	1.97
33020480--33020536	17	3.4	17	69	9	53	28	15	19	36	1.92
33032319--33032365	24	2.0	24	91	0	76	23	19	2	55	1.54
33032472--33032557	40	2.2	40	89	0	127	38	22	17	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211