genome.fa.s21.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  15  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4973609--4973665	29	1.9	30	89	3	89	61	3	0	35	1.13
4973629--4973674	18	2.5	18	86	13	67	54	4	0	41	1.20
4973629--4973669	20	2.2	20	91	8	68	58	4	0	36	1.20
4980889--4980929	15	2.7	15	82	17	57	75	2	4	17	1.08
4981064--4981131	21	3.2	21	62	25	52	16	20	5	57	1.60
4981062--4981158	43	2.3	43	96	0	176	14	21	8	55	1.65
4981063--4981131	22	3.2	22	61	19	54	15	20	5	57	1.58
4983172--4983205	17	2.0	17	94	0	59	0	38	2	58	1.13
4984472--4984515	22	2.0	22	86	8	63	22	9	2	65	1.32
4989933--4989987	22	2.5	22	93	0	92	29	18	10	41	1.84
4990283--4990308	8	3.2	8	100	0	52	34	34	0	30	1.58
4990415--4990473	9	6.4	9	81	11	75	22	11	27	38	1.89
4995160--4995194	3	11.7	3	100	0	70	65	0	0	34	0.93
4996867--4996906	20	2.0	21	85	5	55	42	7	0	50	1.30
5002140--5002176	19	1.9	19	94	0	65	29	2	5	62	1.31
5004774--5004808	15	2.3	15	90	9	54	51	22	0	25	1.48
5005514--5005737	78	2.8	82	91	4	350	33	27	18	20	1.96
5005475--5005752	119	2.3	124	86	4	372	33	28	18	19	1.96
5005475--5005752	41	6.9	41	86	5	334	33	28	18	19	1.96
5005867--5006047	64	2.9	63	89	8	262	41	17	8	32	1.79
5007951--5008016	3	22.3	3	73	14	57	28	4	1	65	1.21
5008299--5008362	4	16.0	4	76	9	51	21	3	6	68	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5008481--5008951	109	4.3	109	92	0	753	31	14	18	35	1.91
5008476--5008960	219	2.2	218	91	2	785	31	14	18	35	1.91
5014714--5014774	29	2.1	29	84	0	77	22	24	24	27	2.00
5018353--5018969	288	2.1	288	92	0	1027	37	15	18	28	1.91
5027836--5027882	18	2.7	17	75	18	51	63	8	0	27	1.23
5027991--5028033	11	3.9	11	76	11	52	51	11	16	20	1.75
5028634--5028668	17	2.0	18	88	5	54	40	0	5	54	1.24
5030669--5030712	21	2.0	22	95	4	81	34	18	13	34	1.90
5050657--5050699	10	4.1	10	78	21	52	48	0	2	48	1.14
5058392--5058438	21	2.2	22	92	3	78	21	38	19	21	1.94
5065933--5065977	20	2.3	19	82	14	56	40	8	2	48	1.47
5082489--5082513	13	1.9	13	100	0	50	48	0	8	44	1.32
5086017--5086055	19	2.1	19	85	9	53	66	7	7	17	1.40
5086401--5086446	22	2.0	24	87	8	69	80	6	8	4	1.01
5088428--5088485	26	2.3	26	82	8	77	63	3	6	25	1.35
5091252--5091310	22	2.7	21	80	12	73	32	3	20	44	1.68
5096391--5096449	22	2.7	21	80	12	73	32	3	20	44	1.68
5100355--5100387	16	2.1	16	94	0	57	3	15	6	75	1.11
5103456--5103509	26	2.2	26	83	6	67	66	1	5	25	1.23
5107504--5107574	33	2.0	36	84	13	94	42	0	12	45	1.42
5106796--5107720	460	2.0	461	97	1	1766	55	2	9	32	1.46
5111379--5111407	7	4.1	7	100	0	58	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5112713--5112765	20	2.6	21	81	3	63	50	26	3	18	1.64
5112700--5112724	7	3.6	7	100	0	50	44	44	0	12	1.41
5112711--5112771	21	3.0	21	80	2	61	49	24	3	22	1.65
5112787--5112825	7	5.7	7	84	6	53	25	2	28	43	1.68
5112781--5112823	20	2.1	21	91	4	70	25	4	25	44	1.73
5115961--5116021	3	20.3	3	100	0	122	0	34	0	65	0.93
5116700--5116770	28	2.7	25	78	16	81	64	0	1	33	1.02
5121279--5121334	21	2.7	21	91	0	94	25	8	37	28	1.86
5125612--5125637	12	2.2	12	100	0	52	42	0	7	50	1.31
5125851--5125894	21	2.1	21	91	8	72	52	0	4	43	1.22
5127718--5128065	50	6.9	51	71	5	244	25	26	19	28	1.99
5127684--5128069	100	3.8	100	90	1	603	26	25	19	28	1.99
5127684--5128069	201	1.9	200	91	1	630	26	25	19	28	1.99
5128103--5128285	44	4.2	44	68	2	125	25	25	21	26	2.00
5128062--5128304	132	1.8	131	94	0	432	27	24	19	27	1.99
5128128--5128315	44	4.3	44	67	10	123	26	27	19	27	1.99
5129611--5129702	46	2.0	46	89	0	139	13	23	16	46	1.82
5129616--5129712	46	2.1	46	80	0	104	13	26	15	44	1.83
5133791--5133816	12	2.2	12	100	0	52	42	0	7	50	1.31
5134029--5134066	18	2.1	18	90	9	60	50	0	5	44	1.24
5141497--5141527	13	2.4	13	94	0	53	0	9	16	74	1.07
5148720--5148764	22	2.0	22	83	8	56	22	2	8	66	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5153145--5153200	3	18.7	3	96	0	103	64	0	1	33	1.04
5155548--5155580	8	4.1	8	85	14	50	36	0	0	63	0.95
5158675--5158699	9	2.8	9	100	0	50	12	24	28	36	1.91
5161976--5162081	53	2.0	51	89	3	158	32	15	9	43	1.78
5166989--5167044	28	2.0	28	96	0	103	30	21	19	28	1.98
5168495--5168562	33	2.1	33	100	0	100	60	0	2	36	1.12
5169040--5169079	20	2.0	20	90	9	64	52	0	0	47	1.00
5173331--5173692	69	5.2	69	77	4	303	25	16	22	34	1.95
5182459--5182514	16	3.3	17	78	9	53	50	1	5	42	1.35
5185854--5185888	18	2.0	18	88	5	54	45	11	8	34	1.71
5189836--5189896	28	2.2	28	82	5	70	47	1	6	44	1.39
5191070--5191115	20	2.2	20	80	3	56	69	6	2	21	1.22
5192558--5192786	126	1.8	126	87	3	345	32	19	18	29	1.96
5193576--5193643	34	2.0	34	85	5	93	20	25	23	30	1.98
5196752--5197236	18	26.0	18	66	21	125	43	10	13	32	1.78
5196754--5196861	35	2.9	35	76	19	103	46	12	10	30	1.75
5196818--5196848	16	1.9	16	93	0	53	48	12	12	25	1.77
5196828--5196920	37	2.5	37	81	10	100	44	12	9	33	1.76
5196950--5197231	17	15.6	17	68	18	101	42	10	15	32	1.80
5196947--5197123	38	4.8	38	75	4	141	43	10	14	32	1.78
5197054--5197137	19	4.5	20	78	11	65	46	8	11	33	1.71
5196950--5197212	35	7.3	35	72	16	125	42	10	14	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5197068--5197223	35	4.5	34	76	13	131	42	9	15	32	1.79
5197304--5197422	48	2.5	48	94	2	195	44	8	11	35	1.71
5197432--5197480	17	2.8	17	82	11	64	44	10	16	28	1.80
5197585--5197627	20	2.2	20	87	4	61	44	11	18	25	1.84
5198306--5198384	6	12.3	7	71	26	52	1	22	0	75	0.87
5198437--5198464	7	4.0	7	100	0	56	0	57	0	42	0.99
5198470--5198515	14	3.1	16	73	23	55	0	34	0	65	0.93
5199075--5199139	29	2.2	29	78	10	71	40	4	24	30	1.75
5199672--5200151	78	6.3	75	81	9	548	35	20	16	28	1.94
5199674--5200151	228	2.1	227	87	4	680	35	20	16	27	1.94
5199693--5200152	154	3.0	150	86	8	603	35	20	16	27	1.94
5201004--5201108	1	105.0	1	69	0	66	1	6	6	84	0.83
5201020--5201108	9	9.6	9	79	13	74	2	4	7	85	0.81
5212242--5212280	17	2.4	17	86	4	53	51	10	10	28	1.68
5212302--5212488	17	10.3	17	67	15	81	43	10	13	32	1.77
5212300--5212489	38	5.1	38	72	12	137	43	10	13	33	1.77
5212300--5212439	74	1.9	75	84	10	189	42	10	13	33	1.79
5212419--5212527	19	6.1	19	68	18	72	48	8	12	30	1.71
5212296--5212489	74	2.6	73	78	11	184	43	9	13	32	1.77
5212302--5212476	36	4.8	36	71	18	114	44	10	13	31	1.78
5212375--5212588	18	12.0	17	69	21	109	44	9	14	31	1.77
5212375--5212575	35	5.6	34	78	13	142	43	9	13	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5212656--5212775	48	2.5	47	91	4	186	41	8	14	35	1.75
5212785--5212831	17	2.7	17	81	12	60	44	10	14	29	1.79
5212942--5212980	20	2.0	20	89	0	60	43	12	15	28	1.83
5213654--5213730	7	11.3	7	72	22	58	0	24	0	75	0.81
5213658--5213736	11	7.6	11	71	21	55	0	26	0	73	0.84
5213644--5213736	17	5.6	17	77	15	65	1	25	0	73	0.90
5213648--5213736	30	2.9	31	75	18	80	1	25	0	73	0.91
5213653--5213735	39	2.0	42	82	11	102	0	25	0	74	0.82
5213653--5213735	42	2.0	42	84	13	109	0	25	0	74	0.82
5214418--5214583	29	5.6	30	71	11	78	40	7	22	29	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211