genome.fa.s21.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  123  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38930889--38931005	62	1.9	60	86	5	164	50	2	3	43	1.32
38934538--38934644	47	2.3	47	80	3	117	23	20	18	37	1.94
38935526--38935567	20	2.0	23	86	13	63	45	9	7	38	1.64
38941774--38941817	23	2.0	23	90	4	72	47	9	6	36	1.62
38947160--38947209	26	2.0	25	84	4	64	24	8	26	42	1.82
38947387--38947477	36	2.5	37	80	7	105	24	24	14	37	1.92
38949480--38949736	131	2.0	131	93	1	444	25	21	12	40	1.88
38952066--38952106	13	3.0	14	79	13	50	56	0	0	43	0.99
38952246--38952335	45	1.9	47	86	6	130	48	3	11	36	1.55
38952241--38952401	24	7.2	23	70	21	85	52	3	9	35	1.49
38952321--38952400	22	3.7	21	75	12	72	52	2	7	37	1.43
38954170--38954341	43	4.0	43	76	13	122	25	16	26	31	1.97
38954224--38954341	43	2.8	42	82	6	123	23	17	26	32	1.97
38956324--38956359	18	1.9	19	94	5	65	22	5	5	66	1.34
38957733--38957791	30	2.0	30	96	0	109	23	27	23	25	2.00
38957762--38958044	41	6.9	41	85	0	361	21	22	28	27	1.99
38957762--38958050	122	2.4	122	86	3	409	22	22	28	26	1.99
38959580--38960164	145	4.0	147	90	0	854	41	12	13	32	1.82
38959580--38960164	292	2.0	292	87	1	850	41	12	13	32	1.82
38965876--38965992	43	2.7	42	78	5	126	21	17	33	28	1.95
38966106--38966148	22	2.0	22	85	0	59	44	25	18	11	1.84
38970178--38970318	68	2.1	69	93	1	239	41	12	10	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38980375--38980561	103	1.8	102	91	2	313	28	12	24	34	1.92
38982109--38982137	6	4.8	6	100	0	58	0	68	0	31	0.89
38985669--38985961	120	2.4	120	94	2	500	41	3	4	50	1.39
38985794--38985835	15	2.9	15	82	10	52	47	0	0	52	1.00
38985923--38985964	15	2.7	16	82	14	52	45	0	2	52	1.13
38985914--38985955	15	2.9	15	82	10	52	47	0	0	52	1.00
38985898--38986214	157	2.0	157	94	1	555	47	5	3	43	1.41
38986337--38986405	16	4.2	16	94	3	120	39	36	0	24	1.56
38986337--38986405	33	2.1	32	94	2	120	39	36	0	24	1.56
38993567--38994007	217	2.0	215	92	2	740	41	15	7	35	1.76
38996247--38996280	17	2.1	16	88	5	50	32	0	8	58	1.29
39002501--39002634	70	1.9	70	83	3	171	47	14	12	24	1.79
39012751--39012813	22	2.8	22	78	2	72	52	26	1	19	1.55
39025837--39025888	4	13.0	4	95	0	95	25	0	26	48	1.52
39031750--39031788	2	19.5	2	100	0	78	51	0	48	0	1.00
39043125--39043171	17	2.7	18	77	6	53	51	0	25	23	1.49
39044173--39044260	9	9.4	9	72	18	56	63	4	2	29	1.26
39045406--39045452	16	2.9	16	75	12	51	74	4	21	0	0.99
39047257--39047324	35	1.9	35	93	0	118	39	14	11	33	1.83
39047327--39047372	22	2.1	22	84	4	58	26	4	6	63	1.38
39048822--39048872	23	2.2	23	85	0	66	43	19	7	29	1.79
39051816--39052159	50	6.9	50	85	2	424	26	21	30	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39051773--39052159	100	3.8	100	84	4	440	26	20	29	22	1.98
39052504--39052571	22	3.1	22	80	0	73	17	25	16	41	1.89
39057784--39057827	23	1.9	23	85	0	61	52	0	2	45	1.13
39062268--39062880	51	12.5	50	79	12	607	27	23	18	29	1.98
39062255--39062880	97	6.4	97	85	4	762	27	23	18	29	1.98
39076182--39076245	13	4.8	13	75	11	58	35	17	3	43	1.65
39087131--39087410	138	2.0	141	97	2	539	44	8	10	36	1.69
39088715--39088775	26	2.3	27	80	5	70	36	0	1	62	1.05
39088832--39088868	15	2.4	16	86	9	58	37	0	2	59	1.12
39091672--39091743	9	7.9	9	70	23	53	43	0	4	52	1.20
39092712--39092997	97	2.9	93	84	14	318	28	24	27	18	1.98
39092720--39092990	50	5.6	48	71	17	190	28	25	26	18	1.98
39092895--39093442	271	2.0	278	95	4	999	32	19	20	26	1.97
39096619--39096731	46	2.5	46	91	4	178	32	7	15	44	1.74
39097816--39097916	35	2.9	35	80	4	96	41	15	7	34	1.77
39097860--39097936	36	2.1	36	83	7	93	51	9	7	31	1.62
39112493--39112532	2	19.5	2	89	5	62	50	0	47	2	1.14
39123523--39123553	16	1.9	16	93	0	53	77	3	0	19	0.90
39124261--39124309	16	3.1	16	100	0	98	36	6	36	20	1.78
39124542--39124576	18	2.0	17	88	5	52	54	0	0	45	0.99
39124528--39124936	121	3.4	121	96	1	759	48	4	2	43	1.38
39124781--39124817	16	2.2	17	86	13	51	56	0	2	40	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39124915--39124963	24	2.1	23	85	11	64	51	2	2	44	1.24
39124921--39125082	47	3.7	46	72	18	164	45	3	3	48	1.33
39124945--39125155	86	2.4	90	88	4	313	45	3	2	47	1.35
39125010--39125148	47	3.0	47	71	17	130	46	4	2	46	1.34
39142808--39142843	2	18.0	2	88	0	54	47	47	0	5	1.25
39143609--39143671	9	7.1	9	83	8	85	39	0	0	60	0.97
39143609--39143671	17	3.6	17	91	6	99	39	0	0	60	0.97
39143611--39143660	8	6.0	8	88	9	73	38	0	0	62	0.96
39143663--39143702	21	1.9	21	89	0	62	37	2	0	60	1.11
39143662--39143720	22	2.8	21	80	14	59	40	1	3	54	1.27
39145428--39145452	13	1.9	13	100	0	50	88	0	12	0	0.53
39145739--39145799	18	3.4	18	73	13	63	54	0	1	44	1.10
39146344--39146399	21	2.6	22	80	5	71	33	5	0	60	1.19
39147520--39147554	10	3.2	11	88	12	54	17	37	0	45	1.48
39148740--39148771	7	4.6	7	100	0	64	28	0	12	59	1.34
39149420--39149454	18	1.9	18	94	0	61	25	31	8	34	1.86
39149875--39150055	44	4.0	45	74	11	161	41	0	13	44	1.44
39149885--39150065	94	1.9	94	90	0	290	43	0	13	43	1.44
39149929--39149998	25	2.8	25	100	0	140	44	0	14	41	1.45
39150081--39150416	29	11.7	28	78	15	264	45	27	0	26	1.54
39150061--39150150	23	3.6	23	68	18	72	46	28	0	24	1.53
39150081--39150467	51	6.8	58	78	15	361	45	27	0	26	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39150081--39150314	59	3.8	61	80	13	250	46	28	0	25	1.53
39150088--39150407	88	3.7	86	76	16	335	45	27	0	26	1.54
39150284--39150329	22	2.2	20	85	11	58	45	28	0	26	1.54
39150321--39150478	23	6.5	23	70	25	103	44	26	0	28	1.54
39150437--39150482	22	2.2	20	88	11	67	45	28	0	26	1.54
39150484--39150701	116	1.9	116	96	0	400	39	8	8	43	1.67
39150677--39150718	17	2.4	18	80	4	50	42	9	2	45	1.49
39153729--39154080	126	2.8	124	86	5	503	32	21	15	30	1.94
39156112--39156235	42	2.9	42	86	1	167	18	26	39	15	1.90
39159683--39159745	19	3.3	19	86	0	90	15	22	28	33	1.95
39163196--39163301	42	2.6	42	83	5	119	24	23	36	15	1.93
39165023--39165073	19	2.6	19	84	9	59	43	5	1	49	1.38
39181281--39181318	19	2.0	20	84	5	51	36	5	10	47	1.61
39190100--39190239	40	3.5	40	95	0	253	30	22	20	27	1.98
39194673--39194794	28	4.4	28	81	0	136	27	26	22	22	1.99
39195090--39195282	27	7.2	26	83	5	197	19	18	20	41	1.91
39195090--39195282	54	3.6	54	83	4	246	19	18	20	41	1.91
39195090--39195282	81	2.4	80	84	1	251	19	18	20	41	1.91
39207376--39207415	21	1.9	21	94	0	71	12	37	12	37	1.81
39208842--39208882	18	2.5	17	81	14	50	34	24	0	41	1.55
39209609--39209648	20	2.0	20	85	0	53	52	12	0	35	1.39
39211078--39211332	76	3.4	76	81	1	269	31	18	21	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39211078--39211180	36	2.7	37	74	7	100	29	18	23	29	1.98
39215149--39216224	334	3.2	333	84	3	1345	32	13	16	36	1.89
39226535--39226794	40	6.6	39	86	8	296	25	20	28	25	1.99
39226535--39226794	79	3.3	78	85	7	298	25	20	28	25	1.99
39226588--39226829	79	3.1	80	85	2	260	26	20	28	24	1.99
39234118--39234380	40	6.6	40	85	4	282	25	21	27	25	1.99
39234119--39234415	80	3.7	80	81	6	230	26	21	27	24	1.99
39242051--39242211	33	4.9	32	84	6	196	29	18	20	31	1.96
39242051--39242211	66	2.4	66	89	2	234	29	18	20	31	1.96
39242520--39242549	15	2.0	15	100	0	60	26	13	13	46	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211