genome.fa.s21.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  124  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39248142--39248180	11	3.5	11	85	3	51	17	0	10	71	1.12
39250054--39250092	19	2.0	20	95	5	71	20	15	5	58	1.55
39252341--39252675	87	3.8	86	79	7	320	32	12	11	43	1.79
39252341--39252680	88	3.9	87	81	4	344	32	12	12	42	1.79
39254581--39254739	33	4.8	33	84	0	201	27	18	22	31	1.97
39254581--39254728	66	2.2	66	90	0	233	29	18	20	31	1.97
39283994--39284117	50	2.5	50	82	5	151	28	23	28	20	1.99
39285340--39285574	32	7.4	32	86	2	285	38	17	20	22	1.93
39285720--39285801	24	3.5	23	81	8	85	46	23	7	23	1.77
39285822--39285889	27	2.6	27	84	11	81	25	27	16	30	1.96
39285841--39285921	27	3.0	27	87	1	110	24	20	18	35	1.95
39285846--39285933	27	3.3	26	82	6	104	22	19	19	38	1.93
39288028--39288417	43	9.1	43	81	5	398	32	26	16	23	1.96
39292226--39292261	16	2.3	16	90	4	56	36	2	33	27	1.72
39293169--39293245	14	5.4	14	72	9	66	37	41	0	20	1.53
39293169--39293286	7	16.6	7	73	6	58	40	37	0	22	1.54
39293169--39293245	21	3.6	21	80	5	77	37	41	0	20	1.53
39293252--39293280	15	1.9	15	100	0	58	44	34	0	20	1.52
39293233--39293286	22	2.5	21	81	3	63	48	29	0	22	1.51
39293693--39293744	14	3.8	13	78	12	50	50	32	0	17	1.47
39293918--39294253	41	8.2	41	81	3	370	28	29	20	21	1.98
39293918--39294291	123	3.0	122	77	5	356	28	28	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39296783--39296819	14	2.7	14	91	4	58	29	13	8	48	1.71
39302308--39302351	19	2.3	20	84	7	56	27	20	11	40	1.86
39304400--39304457	9	6.7	9	88	11	86	79	10	0	10	0.94
39304474--39304508	16	2.2	16	95	5	63	85	0	14	0	0.59
39306953--39307246	44	6.8	43	77	7	222	31	16	22	29	1.96
39307001--39307291	129	2.3	129	86	3	390	31	16	22	29	1.96
39307362--39307415	23	2.3	23	77	0	63	25	16	22	35	1.95
39311302--39311338	18	2.1	18	100	0	74	43	10	10	35	1.75
39314895--39314932	19	2.0	19	89	0	58	57	10	13	18	1.63
39314913--39314955	16	2.7	16	85	0	50	48	11	18	20	1.79
39316731--39317342	27	22.7	27	83	3	669	43	18	18	19	1.89
39318560--39318595	17	2.1	17	89	0	54	47	11	27	13	1.77
39324767--39325257	27	18.3	27	84	3	571	42	18	19	19	1.89
39327893--39327934	16	2.7	15	85	7	57	45	2	0	52	1.13
39342952--39343042	45	2.0	45	100	0	182	37	15	13	34	1.86
39349705--39349770	12	5.5	12	75	10	55	18	3	7	71	1.23
39351381--39351604	39	5.7	40	80	7	206	25	28	20	25	1.99
39351381--39351604	40	5.7	37	78	13	159	25	28	20	25	1.99
39351381--39351604	79	2.8	77	78	7	209	25	28	20	25	1.99
39351536--39351613	40	1.9	41	82	10	97	26	28	20	24	1.99
39358898--39359121	40	5.7	40	81	7	215	25	28	20	25	1.99
39358898--39359121	79	2.8	78	78	9	204	25	28	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39359053--39359130	40	1.9	41	82	10	97	26	28	20	24	1.99
39366644--39366677	4	8.8	4	87	6	52	20	2	0	76	0.92
39366645--39366676	15	2.1	15	94	0	55	21	3	0	75	0.95
39368314--39368340	6	4.5	6	100	0	54	14	0	0	85	0.61
39379720--39379755	6	6.2	6	87	6	56	80	2	0	16	0.83
39379720--39379755	17	2.1	18	89	5	56	80	2	0	16	0.83
39381708--39381755	22	2.3	21	85	7	62	27	4	8	60	1.44
39382292--39382321	14	2.1	14	93	0	51	16	43	0	40	1.48
39384136--39384169	16	2.2	15	89	5	50	55	0	0	44	0.99
39388243--39388328	28	3.0	28	83	6	109	29	24	24	22	1.99
39388432--39388488	26	2.2	25	78	9	60	42	21	15	21	1.89
39388444--39388511	26	2.6	26	83	0	73	39	20	19	20	1.92
39388690--39388857	27	6.2	27	82	5	171	18	16	19	45	1.85
39391781--39391821	20	2.0	20	85	0	55	26	12	24	36	1.91
39391811--39391844	16	2.1	16	100	0	68	29	17	11	41	1.85
39398166--39398385	99	2.2	99	83	4	284	35	18	19	27	1.94
39401933--39401968	18	2.0	18	88	0	54	16	33	30	19	1.94
39403866--39403910	23	2.0	23	86	0	63	22	0	6	71	1.09
39406400--39406424	13	1.9	13	100	0	50	40	0	0	60	0.97
39406840--39406925	43	2.0	43	97	0	163	30	15	13	40	1.86
39408630--39408799	39	4.6	36	68	11	101	31	21	21	24	1.98
39408575--39408875	75	4.0	74	81	8	268	31	21	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39408614--39408875	75	3.5	75	84	5	305	32	20	20	25	1.98
39408614--39408870	36	6.8	39	70	14	139	31	21	21	26	1.98
39412593--39412665	38	1.9	37	86	8	103	31	21	1	45	1.61
39412653--39412696	23	1.9	22	82	17	54	38	22	0	38	1.55
39412795--39412916	23	5.3	23	91	0	199	31	23	22	22	1.98
39414847--39414945	23	4.3	23	93	0	162	34	26	19	20	1.96
39417941--39419838	335	5.7	334	86	2	2467	31	14	16	37	1.89
39417941--39419838	668	2.9	663	84	4	2523	31	14	16	37	1.89
39424373--39424409	18	2.1	18	94	0	65	43	5	21	29	1.75
39431656--39431682	6	4.5	6	100	0	54	33	37	0	29	1.58
39434846--39435034	99	1.9	99	84	2	254	35	15	20	28	1.93
39454521--39454651	54	2.4	53	81	6	138	44	18	19	17	1.87
39454510--39454651	27	5.3	26	78	5	124	44	16	19	19	1.87
39456419--39457203	330	2.4	333	87	2	1114	32	14	14	38	1.87
39457066--39457348	145	2.0	143	81	5	329	30	14	18	37	1.90
39463603--39463652	21	2.3	20	83	12	64	56	2	0	42	1.11
39466698--39466742	22	2.0	22	82	0	54	53	2	0	44	1.13
39468297--39468530	99	2.4	98	80	7	244	34	17	19	28	1.94
39476943--39477149	76	2.7	75	78	3	180	34	20	19	25	1.96
39481088--39482287	335	3.6	334	83	2	1494	32	14	15	37	1.88
39481060--39482287	669	1.8	670	84	1	1683	31	14	16	37	1.88
39485274--39485651	189	2.0	189	97	0	711	43	8	25	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39486918--39486970	28	1.9	28	84	3	72	49	3	1	45	1.31
39487109--39487159	22	2.3	23	83	16	72	56	0	0	43	0.99
39490321--39490360	20	2.0	20	90	0	62	27	10	12	50	1.72
39495371--39495441	27	2.6	27	88	0	97	38	14	22	25	1.92
39495391--39495446	27	2.1	27	96	0	103	37	12	26	23	1.90
39503729--39504196	151	3.1	146	84	6	566	43	9	4	42	1.58
39504969--39505273	42	7.3	42	82	1	342	38	22	16	22	1.93
39505691--39505730	16	2.4	16	80	19	55	12	2	0	85	0.71
39505675--39505722	21	2.1	23	88	11	73	8	4	4	83	0.90
39507139--39507277	63	2.2	61	82	9	158	30	8	18	41	1.81
39507404--39507508	41	2.6	41	93	0	183	24	20	22	32	1.98
39509670--39509752	36	2.4	35	78	20	95	6	22	3	67	1.29
39509672--39509752	35	2.4	33	82	13	94	6	22	3	67	1.29
39514527--39514769	50	4.8	50	75	10	181	25	26	20	27	1.99
39516447--39516491	22	2.0	22	82	0	54	44	11	2	42	1.52
39516386--39516839	153	3.0	149	82	7	544	41	10	4	43	1.60
39525551--39525671	3	40.3	3	69	22	69	30	5	0	62	1.24
39525562--39525608	10	4.7	10	82	17	62	29	8	0	61	1.25
39525541--39525720	17	11.0	16	68	23	67	31	4	2	62	1.27
39525634--39525735	28	3.8	27	71	14	86	32	0	4	61	1.23
39525696--39525735	20	2.0	20	100	0	80	35	0	5	60	1.19
39525763--39525814	20	2.6	21	76	14	56	26	3	5	63	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39533898--39533945	23	2.3	20	78	21	62	31	16	6	45	1.72
39533904--39533948	23	2.0	23	100	0	90	31	13	6	48	1.68
39541517--39541564	23	2.3	20	78	21	62	31	16	6	45	1.72
39541523--39541567	23	2.0	23	100	0	90	31	13	6	48	1.68
39549058--39549234	8	21.9	8	65	24	54	31	5	2	61	1.30
39549047--39549087	14	2.9	14	88	3	64	41	0	0	58	0.98
39549111--39549228	3	38.3	3	70	23	61	29	5	2	62	1.30
39549111--39549228	17	7.3	15	70	18	51	29	5	2	62	1.30
39549111--39549206	20	4.8	19	72	18	70	30	6	1	62	1.26
39549111--39549228	25	4.7	25	77	18	88	29	5	2	62	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211