genome.fa.s21.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  140  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44175146--44175192	16	2.9	17	84	9	62	57	4	10	27	1.51
44176450--44176485	15	2.5	15	86	4	56	11	5	41	41	1.64
44176539--44176597	20	3.0	20	85	7	86	38	1	3	55	1.26
44190253--44190301	20	2.5	19	77	6	53	24	24	22	28	1.99
44191632--44191667	19	2.0	19	89	10	58	66	0	0	33	0.92
44192146--44192203	15	3.8	16	76	17	61	34	0	0	65	0.93
44192143--44192189	22	2.1	21	84	11	58	36	0	0	63	0.94
44192286--44192316	16	1.9	16	93	0	53	29	0	3	67	1.06
44192306--44192347	17	2.5	17	76	3	50	30	0	7	61	1.22
44192616--44192646	16	1.9	16	93	0	53	48	9	6	35	1.62
44192737--44192803	29	2.3	29	85	7	93	35	0	1	62	1.04
44192808--44192860	20	2.7	20	85	11	65	30	1	7	60	1.35
44200117--44200169	22	2.4	21	87	6	70	43	28	11	16	1.83
44200139--44200380	38	6.4	38	79	6	276	37	31	18	12	1.88
44200076--44200208	60	2.2	61	84	9	175	40	29	14	15	1.87
44200139--44200376	76	3.1	76	83	5	304	37	31	18	12	1.88
44203778--44203829	19	2.6	21	85	11	65	40	1	5	51	1.37
44210162--44210372	88	2.4	89	85	3	284	26	26	26	21	2.00
44210889--44211213	44	7.5	44	71	12	206	30	19	20	29	1.97
44210889--44211288	217	1.8	218	89	1	624	30	20	20	28	1.98
44210889--44211350	217	2.1	217	85	2	615	31	20	20	27	1.97
44212895--44212961	4	17.8	4	74	9	52	43	0	5	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44212859--44212914	27	2.2	25	84	12	69	33	1	5	58	1.31
44212870--44212954	25	3.2	27	81	8	86	40	1	7	51	1.37
44212888--44212950	21	3.0	21	84	13	76	39	0	6	53	1.26
44212885--44212962	25	3.2	25	80	5	79	41	0	5	53	1.23
44227800--44227825	13	2.0	13	100	0	52	53	7	7	30	1.57
44233710--44233759	24	2.0	25	82	17	61	42	0	34	24	1.55
44240248--44240355	11	9.9	11	67	24	52	41	1	1	54	1.22
44240308--44240346	20	2.0	20	94	0	69	43	0	2	53	1.14
44241108--44241268	25	6.4	25	79	2	162	24	16	24	34	1.96
44241102--44241268	75	2.2	76	79	9	182	25	16	23	34	1.95
44241103--44241268	50	3.3	50	90	0	242	25	16	23	34	1.96
44250942--44250973	17	1.9	16	93	6	55	28	31	18	21	1.97
44255325--44255379	27	2.0	27	96	0	101	30	29	9	30	1.88
44273636--44273716	41	1.9	42	90	5	128	45	20	13	19	1.84
44277386--44277425	18	2.2	18	86	0	53	15	40	7	37	1.75
44289094--44289118	13	1.9	13	100	0	50	56	0	8	36	1.29
44292752--44292776	13	1.9	13	100	0	50	88	0	12	0	0.53
44306784--44306808	13	1.9	13	100	0	50	56	4	8	32	1.47
44316328--44316492	89	1.9	89	89	5	262	51	12	12	23	1.73
44337572--44337639	29	2.3	29	79	18	79	29	7	8	54	1.58
44349499--44349654	25	6.2	25	68	17	76	19	25	19	35	1.95
44349609--44349704	49	2.0	49	83	4	122	20	26	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44350165--44350230	33	2.0	33	93	0	114	28	15	27	28	1.96
44353558--44353674	62	1.9	60	82	6	146	35	4	10	49	1.56
44354688--44354729	15	2.8	15	82	7	50	83	0	4	11	0.79
44356308--44356398	26	3.4	27	80	8	82	31	2	5	60	1.32
44356366--44356435	34	2.0	35	97	2	133	42	0	0	57	0.99
44356996--44357039	17	2.5	18	88	3	63	20	2	15	61	1.45
44360126--44360323	97	2.0	98	86	4	276	28	15	18	37	1.91
44360215--44360746	126	4.2	126	88	1	746	28	17	16	38	1.91
44360831--44360912	34	2.4	33	81	6	101	45	13	0	41	1.43
44361375--44361421	23	2.0	23	92	8	78	51	17	8	23	1.72
44363006--44363050	23	2.0	23	86	0	63	71	2	0	26	0.98
44365143--44365249	53	2.0	53	94	0	187	22	6	22	48	1.73
44365817--44366275	159	2.9	155	81	5	508	33	13	16	36	1.88
44375777--44375844	34	2.0	34	97	0	127	29	7	22	41	1.80
44377406--44377544	40	3.4	39	76	17	136	25	16	25	33	1.96
44386922--44386959	19	2.0	19	85	10	51	42	0	15	42	1.47
44388447--44388508	23	2.9	20	79	11	70	14	22	25	37	1.92
44391682--44391836	42	3.6	44	74	14	137	25	16	25	32	1.96
44392133--44392177	17	2.6	18	76	16	51	44	0	20	35	1.51
44394332--44394370	20	2.0	20	89	0	60	35	0	2	61	1.10
44396267--44396309	17	2.5	17	81	7	52	32	0	2	65	1.06
44401648--44401684	9	4.1	9	85	0	56	32	8	13	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44403524--44403562	20	2.0	20	84	0	51	25	2	15	56	1.52
44403847--44403901	20	2.7	21	85	2	67	27	21	27	23	1.99
44406688--44406768	41	2.0	43	83	9	107	34	7	6	51	1.55
44407102--44407146	15	2.9	17	84	12	53	15	8	8	66	1.43
44407122--44407152	15	2.1	15	93	0	53	19	9	6	64	1.45
44407212--44407635	109	3.9	109	89	1	640	31	15	16	36	1.91
44411896--44411956	17	3.7	16	76	12	61	81	1	14	1	0.84
44413191--44413404	44	4.9	44	85	0	257	28	20	26	23	1.99
44413356--44414132	132	5.9	132	86	3	982	29	17	22	30	1.97
44413615--44414064	44	10.2	43	65	14	141	29	17	23	30	1.97
44413395--44414132	396	1.9	390	88	2	1127	29	17	22	30	1.97
44415467--44415496	3	10.0	3	92	0	51	33	3	0	63	1.11
44415464--44415496	12	2.8	12	95	0	57	33	6	0	60	1.21
44416198--44416243	16	2.9	17	84	9	53	15	8	8	67	1.41
44416219--44416249	15	2.1	15	93	0	53	19	9	6	64	1.45
44416293--44416721	109	4.0	109	91	1	677	31	17	17	34	1.93
44432603--44432674	29	2.5	29	93	0	126	13	22	36	27	1.92
44435231--44435301	6	11.5	6	71	16	56	14	4	2	78	1.01
44435231--44435280	26	1.9	26	88	8	75	12	4	2	82	0.90
44435524--44435637	59	1.9	59	90	0	183	29	4	14	50	1.62
44441097--44441129	16	2.0	17	88	5	50	45	9	0	45	1.35
44441376--44441429	20	2.7	19	85	8	63	46	0	5	48	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44441395--44441435	20	2.1	19	90	4	64	43	2	2	51	1.28
44447290--44447320	11	2.8	11	90	0	53	32	0	0	67	0.91
44447401--44447460	30	2.0	30	96	0	111	56	15	3	25	1.54
44447493--44447535	22	2.0	22	85	0	59	55	11	11	20	1.66
44456137--44456738	94	6.4	94	81	3	618	35	17	19	27	1.94
44456317--44456547	44	4.9	48	65	18	153	32	18	22	27	1.97
44456097--44456675	188	3.1	187	84	2	712	34	18	19	27	1.95
44456309--44456556	50	5.2	48	68	18	169	33	17	21	27	1.96
44456127--44456738	188	3.3	186	81	3	692	35	17	19	27	1.94
44458540--44458624	13	6.1	13	74	19	57	31	4	2	61	1.29
44467264--44467306	20	2.2	20	95	0	77	39	18	9	32	1.83
44469322--44469369	23	2.1	23	88	11	73	27	2	4	66	1.21
44471019--44471070	19	2.8	18	82	8	59	44	1	0	53	1.11
44471035--44471070	18	1.9	19	88	5	56	50	0	0	50	1.00
44471028--44471078	18	2.9	17	75	11	50	45	0	0	54	0.99
44474170--44474214	24	2.0	23	86	8	65	26	4	37	31	1.76
44476348--44476399	17	2.9	16	74	20	50	63	3	0	32	1.12
44476348--44476459	10	11.7	9	72	16	75	61	3	0	33	1.19
44476381--44476451	21	3.5	20	81	11	74	59	1	1	38	1.15
44476969--44477022	20	2.8	21	83	10	62	33	0	1	64	1.04
44476960--44477088	58	2.3	54	77	7	125	32	2	0	64	1.12
44476965--44477079	25	4.2	26	75	14	106	32	2	0	64	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44477008--44477059	19	2.8	18	75	21	54	32	1	0	65	1.04
44482887--44482925	19	2.1	18	95	4	69	43	15	17	23	1.87
44488320--44488556	50	4.6	50	75	5	174	24	27	18	29	1.98
44490273--44490306	12	2.9	12	91	4	52	61	8	5	23	1.47
44494140--44494217	35	2.2	36	83	4	104	20	20	50	8	1.75
44498672--44498851	87	2.1	87	96	0	333	45	10	6	38	1.63
44500695--44500965	42	6.4	42	85	5	325	31	20	22	25	1.98
44500695--44500965	85	3.2	84	85	5	323	31	20	22	25	1.98
44500711--44500957	127	1.9	127	85	8	342	33	19	21	24	1.97
44501401--44501440	12	3.3	12	92	0	62	2	37	17	42	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211