genome.fa.s21.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  96  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30137324--30137592	29	9.3	29	76	10	214	21	26	14	37	1.92
30137413--30137493	30	2.7	30	86	0	99	20	27	16	35	1.94
30144432--30144481	24	2.1	24	84	0	64	18	14	38	30	1.89
30151789--30151856	27	2.5	26	92	2	82	33	27	10	27	1.89
30151787--30151884	28	3.5	28	87	2	126	32	28	12	26	1.92
30162573--30162804	40	5.8	40	91	2	315	21	20	31	26	1.98
30162574--30162832	80	3.2	80	83	4	310	22	20	30	26	1.98
30164739--30164970	40	5.8	40	91	2	315	26	30	21	21	1.98
30168040--30168102	25	2.5	25	92	0	108	42	3	0	53	1.16
30173366--30173461	42	2.3	42	94	0	165	23	26	25	25	2.00
30184158--30184214	25	2.3	25	87	3	80	14	19	21	45	1.85
30188289--30188426	39	3.4	39	84	6	159	21	20	18	39	1.92
30188286--30188479	45	4.4	45	81	7	229	20	19	19	41	1.91
30188289--30188471	84	2.2	84	87	2	260	21	18	18	41	1.90
30195586--30195642	25	2.3	25	87	3	80	14	21	21	43	1.87
30196411--30196483	38	1.9	38	97	0	137	35	27	9	27	1.88
30200003--30200053	21	2.4	21	72	18	52	15	35	21	27	1.94
30204180--30204238	15	3.5	17	68	22	52	38	3	1	55	1.26
30204247--30204280	14	2.4	14	90	0	50	50	0	0	50	1.00
30209857--30209923	33	2.0	33	97	0	125	22	8	26	41	1.83
30210631--30210661	14	2.2	14	94	0	53	35	6	16	41	1.74
30211059--30211104	22	2.1	21	84	4	56	13	15	26	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30211242--30211428	43	4.4	43	85	1	225	25	32	16	25	1.96
30211246--30211441	85	2.3	85	83	1	241	26	32	15	25	1.96
30215851--30215893	19	2.2	20	87	4	61	13	2	4	79	1.00
30216298--30216335	14	2.7	15	84	12	53	42	28	0	28	1.56
30216490--30216545	24	2.3	24	87	0	85	60	1	0	37	1.07
30216603--30216644	21	1.9	23	90	9	70	35	45	2	16	1.61
30216612--30216713	21	4.8	22	72	10	70	39	38	0	22	1.54
30216660--30216706	15	3.3	15	82	8	62	40	31	0	27	1.57
30216915--30216969	25	2.2	25	75	12	60	23	10	5	60	1.51
30217054--30217334	41	6.9	41	84	0	312	28	27	20	24	1.99
30217054--30217331	122	2.3	122	81	4	326	28	26	20	24	1.99
30218497--30218557	32	1.9	32	96	0	113	50	18	3	27	1.62
30218497--30218570	32	2.5	30	87	10	100	51	18	2	27	1.60
30218498--30218584	27	3.0	27	83	11	77	51	18	3	26	1.62
30221004--30221099	48	2.0	48	100	0	192	31	22	16	29	1.96
30222415--30222448	17	2.0	17	88	0	50	55	2	0	41	1.15
30222444--30222537	10	10.1	9	70	17	59	29	2	4	63	1.25
30222494--30222537	18	2.4	18	81	14	54	29	2	2	65	1.16
30223149--30223197	24	2.1	23	84	3	62	51	2	6	40	1.38
30225289--30225328	21	1.9	21	85	10	55	47	0	30	22	1.52
30225366--30225393	9	3.1	9	100	0	56	32	10	10	46	1.73
30225446--30225476	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30228898--30228937	21	1.9	21	85	10	55	47	0	30	22	1.52
30231909--30232033	43	2.9	43	83	3	137	30	26	16	27	1.96
30241498--30241682	56	3.1	56	66	25	142	57	3	10	28	1.50
30241460--30241780	125	2.6	121	90	2	464	55	3	10	29	1.51
30244020--30244088	24	2.8	24	75	14	70	52	4	0	43	1.21
30245258--30245293	17	2.1	17	89	0	54	61	11	0	27	1.30
30247150--30247193	23	2.0	22	86	4	61	63	6	0	29	1.20
30247834--30247885	21	2.4	22	82	17	65	15	23	5	55	1.61
30247835--30247885	23	2.3	23	83	12	63	15	23	5	54	1.63
30247945--30248009	33	2.0	33	93	0	112	24	26	1	47	1.61
30248005--30248049	23	1.9	24	86	4	65	26	22	0	51	1.49
30250141--30250175	6	5.8	6	93	0	52	22	0	60	17	1.37
30250138--30250177	12	3.3	12	85	0	62	27	0	55	17	1.43
30250138--30250177	18	2.2	18	95	0	71	27	0	55	17	1.43
30250196--30250261	13	5.1	13	75	14	55	31	9	27	31	1.88
30250365--30250402	19	2.0	20	84	5	51	44	0	5	50	1.24
30250997--30251274	75	3.7	74	88	3	389	43	9	5	42	1.58
30254221--30254393	40	4.3	40	94	1	294	27	28	20	24	1.99
30254221--30254439	80	2.7	80	86	2	271	27	27	19	25	1.99
30254221--30254446	120	1.9	120	82	5	287	27	27	20	24	1.99
30256709--30257005	50	5.8	50	80	4	258	26	20	29	22	1.99
30264286--30264525	50	4.7	50	80	9	218	25	22	30	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30264286--30264530	100	2.4	103	80	8	259	26	21	29	22	1.99
30265576--30265617	11	3.6	11	93	6	66	78	7	0	14	0.95
30265576--30265617	13	3.4	13	87	12	70	78	7	0	14	0.95
30265662--30265737	30	2.5	31	84	6	100	76	2	10	10	1.12
30266626--30266665	21	1.9	21	89	0	62	77	0	17	5	0.94
30266669--30266718	17	3.0	16	85	5	64	60	4	24	12	1.49
30270159--30277870	194	40.0	194	93	2	13137	34	21	15	28	1.94
30280497--30280680	40	4.6	39	76	9	167	25	27	21	25	1.99
30282319--30284911	194	13.4	194	92	1	4285	34	21	15	28	1.94
30285976--30286831	427	2.0	426	96	0	1595	39	14	19	26	1.91
30290887--30290916	12	2.5	12	94	0	51	26	0	23	50	1.50
30291196--30291244	21	2.3	22	85	3	64	24	12	22	40	1.88
30292676--30292716	16	2.7	14	85	14	55	26	2	29	41	1.69
30294876--30294918	11	3.6	12	82	17	54	74	6	4	13	1.19
30294876--30294919	12	3.5	13	87	6	65	75	6	4	13	1.17
30294876--30294920	13	3.5	13	87	3	56	75	6	4	13	1.15
30294961--30295013	12	4.0	12	73	21	52	77	1	13	7	1.06
30294965--30295031	29	2.3	30	92	2	109	77	2	8	10	1.09
30295928--30295959	15	2.1	16	94	5	57	71	0	21	6	1.07
30298329--30298472	50	2.8	49	70	11	128	33	13	26	26	1.94
30305849--30306026	27	6.6	27	83	3	187	30	28	14	26	1.95
30305849--30306026	54	3.3	54	84	3	223	30	28	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30310797--30310850	25	2.2	25	96	0	99	25	14	24	35	1.94
30310805--30310872	25	2.7	25	86	0	82	26	13	23	36	1.92
30315271--30315319	25	1.9	25	84	12	64	38	2	2	57	1.22
30321706--30321760	27	2.0	28	86	6	78	50	1	0	47	1.11
30348364--30348430	6	11.2	6	88	4	91	0	29	1	68	0.98
30350484--30350527	15	2.9	16	86	6	56	61	0	2	36	1.09
30355612--30355933	158	2.0	158	84	3	423	31	22	17	28	1.97
30357110--30357200	44	2.1	44	89	0	137	47	12	10	29	1.75
30358197--30358462	138	1.9	138	91	0	433	42	8	6	42	1.61
30360004--30360350	102	3.4	101	80	10	354	28	15	26	29	1.96
30360004--30360345	51	6.8	50	76	6	289	28	15	26	29	1.96
30367618--30367956	51	6.7	50	76	9	269	28	15	25	30	1.96
30367618--30367957	102	3.4	102	75	11	297	28	15	25	30	1.96
30370984--30371048	29	2.2	30	75	10	71	23	7	7	61	1.49
30372386--30372410	10	2.5	10	100	0	50	0	16	0	84	0.63
30388374--30388491	33	3.6	33	83	0	155	19	8	31	40	1.81
30390892--30390989	44	2.3	42	85	3	133	12	17	16	54	1.72
30393910--30394212	76	4.0	76	82	3	333	35	22	18	23	1.96
30393933--30394055	40	3.2	39	71	13	128	39	23	17	19	1.92
30401098--30401140	21	2.0	21	100	0	86	37	25	9	27	1.87
30403472--30403510	20	2.0	20	85	10	53	28	2	7	61	1.37
30407696--30407734	16	2.4	16	87	8	53	23	0	2	74	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30408348--30408372	12	2.1	12	100	0	50	32	8	8	52	1.60
30409628--30409672	20	2.2	20	84	7	56	28	20	15	35	1.93
30409794--30409852	31	1.9	31	86	13	86	61	5	0	33	1.18
30409840--30409881	10	4.2	10	79	11	50	76	0	2	21	0.90
30409832--30409874	19	2.3	19	84	8	52	74	2	2	20	1.04
30410064--30410096	18	1.9	17	88	11	50	42	3	0	54	1.15
30410872--30410928	11	5.1	11	91	4	78	28	31	0	40	1.57
30411126--30411191	21	3.3	20	69	26	59	34	1	3	60	1.21
30411689--30411720	7	4.6	7	96	0	55	46	9	0	43	1.35
30415849--30415900	6	8.3	6	78	16	52	73	0	3	23	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211