genome.fa.s21.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  203  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62777442--62777514	27	2.7	27	76	8	76	52	2	0	45	1.15
62777631--62777665	18	2.0	17	88	5	52	54	0	0	45	0.99
62777403--62777677	147	1.9	149	95	1	500	46	3	2	47	1.35
62777733--62777785	16	3.4	17	73	21	53	56	0	0	43	0.99
62777659--62777845	60	3.1	59	66	13	157	49	6	2	41	1.42
62777611--62777905	119	2.5	120	93	2	495	50	4	2	43	1.35
62780106--62780203	23	4.3	23	93	2	171	32	26	20	20	1.97
62780106--62780203	45	2.2	46	92	3	171	32	26	20	20	1.97
62780290--62780318	8	3.6	8	100	0	58	34	27	13	24	1.93
62786073--62786179	37	2.7	39	78	8	128	27	16	23	32	1.96
62786369--62786419	22	2.5	20	81	9	66	45	3	23	27	1.70
62791042--62791104	31	2.0	31	90	0	99	38	14	12	34	1.84
62791464--62791546	35	2.4	34	76	15	80	45	1	1	51	1.16
62798495--62798519	2	12.5	2	100	0	50	48	0	0	52	1.00
62799052--62799089	18	2.1	18	90	9	60	28	2	0	68	1.03
62801218--62801247	6	5.2	6	92	8	53	83	0	0	16	0.65
62801212--62801247	11	3.2	11	88	7	54	80	0	0	19	0.71
62802645--62802692	21	2.2	22	81	7	53	43	2	2	52	1.24
62802841--62802865	2	12.5	2	100	0	50	52	0	0	48	1.00
62808924--62808955	2	16.0	2	100	0	64	50	0	0	50	1.00
62809590--62809657	29	2.3	27	76	16	64	61	5	4	27	1.38
62809594--62809654	29	2.0	29	84	6	77	59	6	4	29	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62811397--62811427	15	2.1	15	93	0	53	29	29	19	22	1.98
62814723--62814794	29	2.4	31	79	9	76	38	9	9	41	1.71
62815970--62816012	18	2.3	19	80	4	52	18	6	27	46	1.75
62818267--62818435	82	2.1	82	100	0	338	28	17	9	44	1.79
62824436--62824465	15	2.0	15	93	0	51	33	3	30	33	1.74
62829694--62829743	17	2.7	20	78	18	70	10	0	44	46	1.37
62834333--62834382	17	2.7	20	78	18	70	10	0	44	46	1.37
62837930--62837972	22	2.0	22	90	0	68	9	18	27	44	1.80
62838062--62838292	43	5.3	43	78	4	241	30	31	17	20	1.96
62838648--62838714	21	3.2	21	78	0	71	5	40	16	37	1.73
62838691--62838850	66	2.4	66	86	4	216	13	27	18	40	1.88
62840640--62841058	42	9.3	42	63	22	129	49	4	6	39	1.49
62840616--62841132	92	5.7	92	97	0	986	48	4	6	40	1.49
62840628--62841132	45	11.1	45	65	19	251	48	4	6	40	1.50
62842235--62842270	16	2.2	16	100	0	72	25	0	36	38	1.56
62842506--62842540	18	2.0	17	88	5	52	54	0	0	45	0.99
62842420--62842713	162	1.8	163	96	0	545	43	3	4	48	1.38
62842648--62842689	15	2.7	16	82	14	52	52	2	0	45	1.13
62842657--62842698	15	2.9	15	82	10	52	52	0	0	47	1.00
62846094--62846329	97	2.4	97	97	0	445	38	7	13	41	1.72
62846414--62846440	13	2.1	13	100	0	54	37	0	7	55	1.28
62849679--62849723	23	2.0	23	86	8	65	40	6	6	46	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62851124--62851150	14	1.9	14	100	0	54	48	0	29	22	1.51
62853302--62853337	17	2.2	16	90	9	56	13	16	0	69	1.19
62855831--62856049	50	4.6	49	78	11	204	27	21	29	21	1.99
62855845--62856019	90	1.9	90	87	0	233	25	22	32	20	1.98
62855784--62856049	140	1.9	141	82	7	340	26	21	28	22	1.99
62856314--62856352	12	3.2	12	85	0	51	51	5	23	20	1.67
62859103--62859145	21	2.0	21	86	8	61	34	0	6	58	1.25
62859128--62859292	58	2.9	58	80	8	178	42	1	3	52	1.29
62867819--62867846	9	3.1	9	100	0	56	10	42	0	46	1.38
62869605--62869634	7	4.3	7	95	0	51	26	0	3	70	1.03
62875719--62875790	32	2.3	31	88	4	101	69	8	5	16	1.33
62875733--62875783	11	4.8	11	83	7	52	70	9	5	13	1.32
62876451--62876490	19	2.1	19	85	0	53	35	0	5	60	1.19
62889588--62889630	3	14.3	3	100	0	86	67	0	0	32	0.91
62906419--62906468	21	2.4	21	86	0	73	34	8	26	32	1.85
62913186--62913221	18	2.0	18	89	10	56	61	2	2	33	1.25
62915326--62915361	18	2.0	18	89	10	56	61	2	2	33	1.25
62920444--62920520	29	2.5	30	81	6	75	44	14	9	32	1.76
62920576--62920625	25	2.0	25	84	0	64	44	4	2	50	1.32
62921267--62921307	21	1.9	22	85	5	57	29	9	4	56	1.53
62922289--62922324	18	2.0	18	89	10	56	61	2	2	33	1.25
62924430--62924465	18	2.0	18	89	10	56	61	2	2	33	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62929527--62929603	29	2.5	30	81	6	75	44	14	9	32	1.76
62929659--62929708	25	2.0	25	84	0	64	44	4	2	50	1.32
62930350--62930390	21	1.9	22	85	5	57	29	9	4	56	1.53
62932234--62932269	18	2.0	18	89	10	56	61	2	2	33	1.25
62934374--62934409	18	2.0	18	89	10	56	61	2	2	33	1.25
62936515--62936550	18	2.0	18	89	10	56	61	2	2	33	1.25
62938656--62938691	18	2.0	18	89	10	56	61	2	2	33	1.25
62941058--62941138	29	2.7	30	78	5	83	46	14	7	30	1.72
62941190--62941239	25	2.0	25	84	0	64	44	4	2	50	1.32
62941490--62941571	41	2.0	41	97	0	155	20	14	24	40	1.90
62948821--62948855	18	1.9	18	94	0	61	45	0	5	48	1.26
62949565--62949598	11	2.9	12	86	8	52	11	5	8	73	1.24
62969500--62969829	44	7.6	43	73	12	223	26	20	21	31	1.98
62990608--62990761	77	2.0	77	94	0	272	23	19	17	39	1.92
62999585--62999617	18	1.9	18	88	11	52	48	0	0	51	1.00
63001184--63001212	6	4.8	6	100	0	58	68	0	0	31	0.89
63001809--63001858	23	2.3	20	80	10	55	60	4	0	36	1.16
63006586--63006632	19	2.4	19	85	7	58	53	2	6	38	1.39
63019039--63019069	2	15.5	2	93	0	53	54	0	0	45	0.99
63024071--63024142	36	2.0	36	100	0	144	36	13	5	44	1.68
63039906--63039962	21	2.6	22	75	5	62	52	3	0	43	1.18
63040870--63040917	17	2.9	16	76	11	51	31	2	16	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63041718--63041765	19	2.3	22	86	13	66	39	2	2	56	1.23
63041723--63041765	20	2.2	21	84	12	56	37	0	2	60	1.10
63042055--63042131	11	7.4	11	84	15	110	57	0	1	41	1.07
63042065--63042098	17	2.0	17	100	0	68	58	0	0	41	0.98
63042048--63042179	40	3.3	40	81	10	137	59	0	1	38	1.06
63042056--63042174	11	11.6	11	78	13	85	57	0	1	41	1.09
63042055--63042171	50	2.3	50	89	5	173	58	0	1	40	1.08
63042106--63042192	40	2.2	39	89	6	138	65	0	1	33	1.00
63042988--63043028	21	1.9	22	85	14	59	19	17	34	29	1.94
63043647--63043684	20	1.9	20	94	0	67	23	15	13	47	1.81
63045764--63045964	106	1.9	106	97	0	384	30	19	19	29	1.97
63052854--63052961	34	3.2	33	80	3	126	40	0	18	39	1.57
63053035--63053926	126	7.1	126	85	4	1200	39	17	16	27	1.90
63053304--63053345	14	3.0	14	76	13	50	50	0	16	33	1.46
63053035--63053926	249	3.6	251	88	4	1275	39	17	16	27	1.90
63055995--63056110	62	1.9	62	83	13	154	52	3	0	43	1.24
63056200--63056246	21	2.3	21	92	3	78	6	14	48	29	1.69
63056488--63056530	18	2.4	18	92	0	68	41	9	27	20	1.83
63057588--63057638	24	2.1	24	82	7	59	68	1	0	29	1.00
63058235--63058300	31	2.1	32	83	8	82	53	10	0	36	1.36
63066613--63066720	54	2.0	54	100	0	216	53	11	7	27	1.63
63074821--63074865	24	1.9	24	95	4	83	48	17	8	24	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63077909--63078028	57	2.1	58	84	9	156	47	0	6	45	1.35
63080158--63080326	86	2.0	86	97	0	320	34	8	3	53	1.48
63080236--63080262	13	2.1	13	100	0	54	33	7	0	59	1.25
63080701--63080736	18	1.9	19	88	5	56	50	5	8	36	1.56
63086826--63086994	85	2.0	83	95	2	302	23	13	15	47	1.81
63086846--63087021	85	2.1	84	80	6	194	25	15	15	43	1.86
63095594--63095856	63	4.2	63	95	0	438	35	7	18	38	1.80
63101241--63101295	19	2.8	18	81	10	56	65	0	0	34	0.93
63108295--63108340	18	2.8	18	84	15	64	0	30	41	28	1.56
63113335--63113364	14	2.1	14	93	0	51	3	26	0	70	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211