genome.fa.s21.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  161  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50328757--50328855	23	4.3	23	92	0	171	23	21	25	30	1.99
50328918--50328955	11	3.5	11	86	13	53	55	0	18	26	1.43
50331329--50332058	363	2.0	363	95	0	1316	30	20	14	35	1.92
50343355--50343449	25	3.9	24	75	9	68	35	18	22	23	1.96
50343410--50343532	49	2.5	49	80	5	133	37	22	21	18	1.94
50343489--50343557	26	2.7	25	80	4	75	33	26	26	14	1.94
50343515--50343574	25	2.3	26	80	11	70	33	25	26	15	1.95
50348415--50348464	23	2.2	23	100	0	100	26	8	18	48	1.75
50356395--50356560	84	2.0	84	89	0	251	23	34	4	37	1.76
50356784--50357218	228	1.9	219	90	5	683	21	37	13	27	1.91
50365494--50365540	19	2.5	19	89	3	69	53	21	8	17	1.70
50365329--50365672	185	1.9	184	84	4	469	40	19	11	28	1.87
50367376--50367412	17	2.2	17	95	0	65	21	18	5	54	1.64
50368005--50368050	13	3.5	13	77	11	58	36	13	19	30	1.90
50367998--50368050	26	2.0	26	96	0	97	35	11	20	32	1.88
50370853--50370950	34	2.6	40	75	18	127	53	9	8	29	1.62
50370877--50370941	34	1.9	34	100	0	130	52	9	6	32	1.58
50371150--50371182	15	2.1	16	88	5	50	66	3	6	24	1.28
50375882--50376051	50	3.4	49	81	4	146	22	27	20	30	1.98
50375918--50376059	50	2.8	50	84	0	176	23	28	20	28	1.99
50378301--50378390	41	2.1	43	81	4	112	20	16	7	55	1.65
50378364--50378436	36	2.0	37	89	2	112	20	17	8	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50378313--50378425	20	5.8	19	66	20	63	21	16	6	55	1.63
50385476--50385527	24	2.2	24	92	0	86	23	30	1	44	1.64
50386200--50386238	19	2.1	19	90	0	60	30	0	5	64	1.15
50386882--50386909	14	2.0	14	100	0	56	28	7	14	50	1.69
50387901--50387935	17	2.1	17	100	0	70	42	11	11	34	1.77
50390280--50390375	43	2.2	44	84	1	131	31	25	16	27	1.97
50393335--50393426	25	3.6	25	74	1	76	31	19	26	22	1.98
50393336--50393434	50	2.0	51	84	6	130	31	19	27	22	1.98
50393363--50393434	25	2.9	25	76	0	63	31	16	30	20	1.95
50393824--50393868	21	2.0	22	83	8	56	40	20	0	40	1.52
50395856--50395907	26	2.0	26	92	0	86	36	11	23	28	1.90
50396010--50396124	58	2.0	58	92	0	194	26	21	15	35	1.94
50397370--50397423	16	3.4	16	94	0	90	33	0	35	31	1.58
50397402--50397496	45	2.1	44	88	1	136	32	6	27	33	1.82
50397656--50397690	18	2.0	17	88	5	52	54	0	0	45	0.99
50401960--50402001	22	1.9	22	90	0	66	38	2	16	42	1.61
50421024--50421169	75	2.0	72	89	4	220	24	23	20	31	1.98
50429301--50429359	2	29.5	2	82	0	73	44	0	52	3	1.17
50440040--50440091	22	2.3	22	77	9	52	51	0	1	46	1.12
50447006--50447043	20	1.9	20	88	0	58	50	13	7	28	1.69
50446992--50447058	34	1.9	35	87	3	100	49	14	4	31	1.64
50447909--50447966	29	2.0	29	93	0	98	31	41	6	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50459802--50459838	9	4.1	9	92	0	65	45	13	10	29	1.77
50460227--50460266	20	2.0	20	85	0	53	25	30	0	45	1.54
50464756--50464783	9	3.1	9	100	0	56	57	10	0	32	1.33
50464726--50464935	68	3.1	68	97	1	388	45	9	4	40	1.57
50464824--50464851	9	3.1	9	100	0	56	57	10	0	32	1.33
50464924--50464965	16	2.6	16	96	0	75	45	7	0	47	1.30
50464939--50465000	22	2.8	22	87	0	88	48	1	0	50	1.10
50464726--50464959	68	3.6	66	92	6	338	46	8	4	40	1.55
50466114--50466153	21	1.9	21	90	10	64	20	10	15	55	1.68
50469135--50469162	13	2.2	13	100	0	56	39	10	14	35	1.81
50473975--50474041	26	2.5	26	78	2	71	52	4	0	43	1.21
50476149--50476373	119	1.8	125	80	6	273	36	4	14	44	1.67
50476715--50476852	42	3.3	42	88	1	188	31	20	21	27	1.98
50478708--50478790	42	2.0	42	100	0	166	31	19	12	37	1.88
50480798--50480851	23	2.4	22	82	14	65	66	1	25	5	1.23
50485654--50485764	24	4.5	24	73	10	91	17	25	22	35	1.95
50485654--50485791	73	1.9	75	85	8	194	18	23	22	34	1.96
50488669--50488752	20	3.2	28	65	28	76	17	23	8	50	1.74
50488668--50488767	50	2.0	50	100	0	200	20	22	8	50	1.74
50501007--50501057	27	1.9	27	88	11	79	27	3	15	52	1.60
50504149--50504179	2	15.5	2	93	0	53	45	0	54	0	0.99
50507583--50507610	4	7.0	4	100	0	56	50	25	0	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50509568--50509637	30	2.4	29	83	4	79	32	0	48	18	1.48
50510607--50510645	16	2.5	16	83	4	53	33	7	12	46	1.71
50514421--50514496	28	2.8	28	82	6	84	17	25	18	39	1.91
50517100--50517147	20	2.4	20	92	0	78	27	12	16	43	1.84
50517100--50517153	20	2.8	18	84	13	56	24	14	14	46	1.83
50519110--50519146	14	2.6	14	95	0	65	45	8	21	24	1.78
50524090--50524150	25	2.4	25	78	10	61	57	1	1	39	1.18
50525513--50525573	27	2.3	27	88	5	90	63	1	0	34	1.04
50532079--50532123	18	2.3	18	85	11	54	71	2	2	24	1.09
50533652--50533699	25	1.9	25	82	0	60	54	6	0	39	1.26
50537115--50537181	17	3.9	17	74	20	50	38	2	16	41	1.64
50537376--50537453	41	1.9	41	86	0	111	19	28	17	34	1.95
50537375--50537473	41	2.4	41	81	0	108	24	27	16	32	1.96
50546839--50546994	82	1.9	81	85	3	215	26	16	28	28	1.97
50546838--50546991	55	2.9	52	82	7	175	27	16	27	27	1.97
50546839--50546994	27	5.7	27	81	6	163	26	16	28	28	1.97
50546831--50547015	27	6.8	27	75	9	101	26	16	28	29	1.97
50546831--50547015	82	2.3	81	78	2	210	26	16	28	29	1.97
50551944--50551994	26	2.0	26	96	0	93	27	3	21	47	1.68
50554167--50554212	4	11.5	4	86	9	67	73	0	2	23	0.94
50554965--50555001	9	4.2	9	93	3	58	24	0	0	75	0.80
50556612--50556653	22	1.9	22	100	0	84	14	9	19	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50561570--50561613	18	2.4	18	82	17	56	36	2	2	59	1.23
50561783--50561839	25	2.3	24	77	11	62	35	14	3	47	1.61
50565906--50566083	90	2.0	91	82	7	220	42	13	11	32	1.80
50571195--50571292	43	2.3	41	82	3	115	36	5	5	53	1.45
50573078--50573200	57	2.2	57	98	0	237	47	14	11	26	1.78
50573229--50573264	18	1.9	19	88	5	56	22	16	5	55	1.62
50589190--50589244	26	2.1	27	83	10	69	65	1	5	27	1.25
50589280--50589310	14	2.3	14	94	5	55	77	0	22	0	0.77
50592209--50592233	12	2.1	12	100	0	50	56	8	8	28	1.57
50599433--50599517	39	2.2	39	97	0	161	45	16	9	28	1.78
50603083--50603111	15	1.9	15	100	0	58	41	6	24	27	1.80
50606674--50606725	23	2.3	22	75	21	54	9	23	1	65	1.32
50606683--50606738	12	4.7	12	74	14	53	12	23	0	64	1.27
50609702--50609833	66	2.0	66	98	0	255	37	12	10	39	1.78
50617575--50617628	21	2.6	21	84	0	72	25	9	35	29	1.87
50620605--50620634	5	6.2	5	92	7	53	80	0	0	20	0.72
50620715--50620764	26	2.0	25	84	4	64	56	2	10	32	1.44
50620948--50620999	26	2.0	27	88	3	79	78	3	7	9	1.06
50624633--50624676	23	1.9	23	90	0	70	31	4	4	59	1.38
50625079--50625120	22	1.9	22	85	0	57	47	2	4	45	1.36
50626399--50626471	32	2.2	33	83	7	87	52	0	6	41	1.28
50626384--50626467	37	2.3	36	76	13	93	50	0	5	44	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50626393--50626472	33	2.4	32	81	8	90	50	0	6	43	1.27
50632041--50632324	87	3.3	87	87	0	406	44	15	26	13	1.83
50632194--50632239	21	2.2	21	84	0	56	43	17	34	4	1.69
50632661--50632896	43	5.5	43	84	1	186	30	18	27	24	1.98
50632661--50632896	86	2.8	86	81	1	287	30	18	27	24	1.98
50632707--50632946	129	1.9	127	81	4	293	29	17	28	25	1.97
50632920--50633005	42	2.0	44	84	4	113	25	22	22	30	1.99
50633437--50633467	15	2.1	15	100	0	62	41	38	6	12	1.69
50634470--50634508	6	6.5	6	93	0	69	48	12	0	38	1.42
50641577--50641672	39	2.5	37	81	6	95	29	28	22	19	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211