genome.fa.s21.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  23  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6981382--6981496	41	2.8	41	93	0	185	28	13	26	30	1.94
6984263--6984319	26	2.2	26	84	6	71	19	21	22	36	1.95
6988006--6988044	2	19.5	2	89	0	60	5	43	0	51	1.24
7000130--7000181	25	2.0	26	82	10	63	46	3	7	42	1.51
7001558--7001588	16	1.9	16	93	0	53	19	0	12	67	1.22
7010676--7010773	35	2.8	35	88	0	133	17	15	26	40	1.89
7012311--7012389	22	3.7	22	67	16	67	56	3	11	27	1.51
7012335--7012406	21	3.5	21	78	17	96	55	2	9	31	1.47
7012314--7012407	41	2.3	41	94	3	165	55	3	10	30	1.50
7018268--7018331	28	2.2	28	97	2	119	26	0	26	46	1.53
7018864--7019011	35	4.2	35	80	3	120	18	10	29	41	1.83
7021212--7021251	22	1.9	22	85	10	57	50	2	32	15	1.57
7031382--7031416	15	2.3	15	90	5	52	57	5	2	34	1.37
7044475--7044519	3	15.0	3	100	0	90	33	0	0	66	0.92
7054448--7054489	3	14.0	3	94	0	75	64	2	0	33	1.07
7055562--7055603	18	2.4	17	92	4	66	33	0	7	59	1.25
7055980--7056012	3	11.0	3	100	0	66	33	0	0	66	0.92
7056107--7056144	20	1.9	19	89	5	58	15	5	7	71	1.28
7058098--7058158	22	2.7	22	87	2	77	49	1	1	47	1.21
7058134--7058173	16	2.5	16	91	0	62	47	2	7	42	1.45
7058246--7058273	9	3.1	9	100	0	56	32	0	10	57	1.33
7058162--7058304	68	2.1	66	92	2	241	41	4	7	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7062166--7062269	3	33.7	3	80	9	57	20	3	10	65	1.39
7065697--7065780	8	10.8	8	86	10	102	77	7	0	15	0.97
7065696--7065802	24	4.5	24	78	13	112	78	7	0	14	0.95
7065737--7065783	22	2.2	22	92	3	69	80	2	0	17	0.80
7066679--7066719	15	2.6	15	88	7	55	75	0	12	12	1.05
7067931--7069057	88	12.8	88	93	0	1903	26	22	25	25	2.00
7069081--7069445	95	3.8	95	90	0	595	29	17	21	31	1.96
7069081--7069442	191	1.9	190	92	1	609	28	17	21	32	1.96
7069430--7069523	44	2.1	44	82	3	109	30	13	25	29	1.94
7069458--7070216	132	5.8	132	94	0	1304	30	18	24	26	1.98
7071594--7071652	3	19.7	3	100	0	118	32	0	0	67	0.91
7071651--7071682	3	10.7	3	93	0	55	3	0	28	68	1.04
7071645--7071686	9	4.7	9	90	0	57	9	0	23	66	1.21
7076165--7076208	23	2.0	23	90	4	72	38	6	2	52	1.41
7076166--7076213	22	2.2	22	85	7	62	39	6	2	52	1.39
7077340--7077421	3	27.3	3	71	18	55	60	4	2	31	1.30
7077999--7078046	18	2.7	17	83	6	51	75	8	12	4	1.18
7079060--7079102	19	2.3	19	84	8	52	37	0	4	58	1.19
7090880--7090922	4	10.2	4	81	18	52	74	2	0	23	0.93
7090880--7090924	9	5.2	9	87	12	60	73	2	0	24	0.95
7091165--7091327	3	55.0	3	73	9	102	60	3	4	30	1.35
7101684--7101713	13	2.2	14	94	5	53	56	0	3	40	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7101856--7101935	30	2.9	28	81	18	82	42	0	2	55	1.13
7121927--7122000	3	23.7	3	78	10	69	27	5	2	64	1.28
7121964--7122012	21	2.3	20	76	10	53	26	12	0	61	1.31
7122133--7122168	14	2.6	14	90	0	54	44	5	0	50	1.25
7122132--7122186	12	4.8	12	78	17	55	43	3	0	52	1.18
7130589--7130621	2	16.5	2	100	0	66	0	51	0	48	1.00
7134121--7134159	19	2.0	20	85	5	53	53	10	7	28	1.62
7134601--7134642	19	2.1	21	91	8	70	71	2	4	21	1.16
7135396--7135425	15	2.1	15	93	6	53	0	0	23	76	0.78
7141802--7141826	2	12.5	2	100	0	50	48	0	0	52	1.00
7145692--7145717	12	2.2	12	100	0	52	7	7	42	42	1.62
7148814--7148949	67	2.0	67	100	0	272	36	22	12	28	1.90
7151513--7151541	14	2.0	15	93	6	51	6	10	6	75	1.17
7151934--7151965	16	2.0	16	93	0	55	28	25	9	37	1.87
7152800--7152828	15	1.9	15	100	0	58	24	13	34	27	1.93
7160043--7160086	24	1.9	24	90	9	74	36	0	2	61	1.09
7160153--7160294	68	2.1	66	93	2	239	45	8	4	41	1.56
7160283--7160324	16	2.6	16	92	0	66	42	7	2	47	1.43
7166703--7166738	18	2.1	17	89	5	54	58	11	19	11	1.62
7167225--7167885	151	4.3	150	85	8	827	52	7	9	30	1.62
7167086--7167885	304	2.6	303	86	6	1099	52	7	9	30	1.63
7169867--7170086	112	2.0	109	93	2	377	38	12	17	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7170522--7170560	2	19.5	2	94	0	60	48	5	0	46	1.24
7171441--7171504	14	4.7	13	78	5	56	40	31	4	23	1.75
7172103--7172214	46	2.5	46	89	4	176	25	25	15	34	1.94
7174525--7174584	20	3.1	19	75	2	57	15	0	35	50	1.44
7178944--7178989	23	2.0	23	84	12	60	19	0	17	63	1.32
7186198--7186277	25	3.2	25	70	7	72	31	17	30	21	1.96
7186168--7186288	50	2.4	50	91	0	188	33	18	28	20	1.96
7186267--7186336	24	2.9	25	77	10	74	37	22	25	14	1.92
7186409--7186532	64	1.9	64	88	0	185	33	20	22	22	1.97
7187457--7187491	18	2.1	16	89	10	52	25	8	0	65	1.21
7187460--7187499	17	2.4	17	80	12	55	25	7	0	67	1.16
7187456--7187500	18	2.5	19	75	17	51	28	6	0	64	1.19
7192977--7193048	24	3.0	25	78	13	71	38	18	25	18	1.92
7193115--7193244	64	2.0	64	83	2	163	35	23	18	23	1.96
7196940--7196987	25	2.0	24	83	4	60	39	20	22	16	1.92
7196967--7197021	24	2.3	24	81	6	67	43	16	20	20	1.88
7197063--7197135	26	2.9	24	74	11	65	41	20	21	16	1.90
7197585--7197626	21	2.0	21	85	0	57	40	23	2	33	1.68
7205541--7205586	24	1.9	24	82	8	58	54	2	6	36	1.39
7205910--7206255	192	1.8	191	89	1	541	39	13	7	39	1.73
7207672--7207710	2	19.5	2	100	0	78	0	0	48	51	1.00
7212508--7212559	24	2.1	24	85	3	68	63	1	1	32	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7213361--7213392	6	5.2	6	92	7	55	3	50	46	0	1.17
7214834--7214881	24	2.0	24	100	0	96	16	20	25	37	1.93
7216525--7216567	19	2.3	18	84	15	52	20	23	13	41	1.88
7218465--7218524	8	7.4	8	77	9	50	81	6	0	11	0.86
7218463--7218524	17	3.8	17	73	16	58	80	6	0	12	0.89
7220601--7221745	88	13.0	88	93	0	1826	26	24	24	24	2.00
7225246--7225303	29	2.0	29	83	12	75	68	3	0	27	1.05
7232233--7232257	3	8.3	3	100	0	50	68	0	0	32	0.90
7234854--7235140	42	7.5	42	70	19	259	32	27	17	23	1.97
7234741--7235177	75	5.8	75	95	0	757	31	27	18	22	1.97
7235805--7235837	12	2.6	13	90	4	50	48	12	3	36	1.56
7239150--7239230	40	2.0	40	95	0	144	14	24	9	50	1.73
7240899--7240976	37	2.1	37	100	0	156	58	12	2	25	1.47
7242106--7242140	11	3.2	11	87	0	52	74	2	0	22	0.95
7243987--7244031	18	2.5	18	100	0	90	33	24	20	22	1.97
7247821--7247851	16	1.9	16	100	0	62	45	6	0	48	1.28
7250658--7250744	24	3.6	24	66	7	68	41	14	3	40	1.63
7250665--7250763	48	2.1	48	100	0	198	42	16	4	37	1.67
7251184--7251214	9	3.4	9	90	0	53	25	12	22	38	1.90
7254466--7254605	45	3.1	45	88	4	210	42	20	17	20	1.90
7254922--7254980	28	2.0	31	83	9	79	44	1	5	49	1.34
7255873--7255994	41	2.8	44	79	10	137	24	18	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7261919--7261970	6	8.3	6	81	14	61	46	19	17	17	1.85
7261951--7262051	45	2.2	45	84	3	132	42	19	16	20	1.89
7263685--7263725	18	2.2	19	83	12	50	39	19	2	39	1.65
7263993--7264039	17	2.8	16	81	9	58	21	0	0	78	0.75
7263994--7264034	20	2.1	19	90	4	64	19	0	0	80	0.71
7264046--7264090	18	2.6	18	80	20	51	33	11	0	55	1.35
7265156--7265214	22	2.5	22	78	8	64	55	3	0	40	1.16
7265780--7265832	17	3.1	17	83	5	54	47	1	0	50	1.12
7266143--7266169	5	5.4	5	100	0	54	59	0	0	40	0.98
7267707--7267746	2	20.0	2	100	0	80	50	0	50	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211