genome.fa.s21.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  125  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39549111--39549231	11	10.3	11	76	15	84	29	4	2	62	1.29
39549214--39549277	17	3.9	17	71	19	55	29	1	6	62	1.29
39549253--39549292	20	2.0	20	100	0	80	35	0	5	60	1.19
39558072--39558096	12	2.1	12	100	0	50	48	8	0	44	1.32
39560614--39560652	21	1.9	20	94	5	69	33	10	25	30	1.89
39560782--39560820	16	2.5	15	88	8	60	23	0	5	71	1.05
39560828--39560865	16	2.6	14	81	18	51	55	0	0	44	0.99
39560836--39560884	18	2.8	17	79	11	55	57	0	0	42	0.99
39568384--39568430	3	16.0	3	86	4	69	63	2	0	34	1.06
39568386--39568438	26	2.1	26	85	3	72	64	1	1	32	1.15
39577520--39577571	23	2.3	23	86	0	68	34	3	15	46	1.64
39577533--39577584	13	4.2	13	73	14	56	36	1	17	44	1.60
39584191--39584249	20	2.9	18	76	18	55	42	8	1	47	1.44
39585992--39586029	20	1.9	20	94	0	67	63	0	7	28	1.23
39586072--39586119	18	2.6	19	83	9	64	72	8	4	14	1.23
39586291--39586364	23	3.3	21	75	17	78	54	4	5	36	1.43
39586466--39586512	24	2.0	24	82	0	58	44	2	6	46	1.40
39591076--39591169	47	2.0	47	100	0	188	40	17	17	25	1.90
39594361--39594392	11	2.9	11	90	0	55	59	6	0	34	1.23
39601230--39601258	2	14.5	2	100	0	58	51	0	48	0	1.00
39601421--39601473	5	10.6	5	100	0	106	39	0	0	60	0.97
39604505--39604593	40	2.2	40	85	0	124	30	17	29	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39605242--39605298	26	2.2	26	96	0	105	43	24	5	26	1.75
39611345--39611858	27	19.1	27	83	3	561	41	21	17	20	1.91
39612095--39612145	26	2.0	26	88	0	75	21	19	19	39	1.93
39612245--39612411	28	6.0	28	86	1	201	27	21	20	30	1.98
39612259--39612420	55	3.0	55	82	3	202	27	21	19	30	1.98
39612246--39612413	83	2.0	84	89	1	257	26	21	20	30	1.98
39614473--39614627	26	6.0	26	84	4	161	27	15	24	32	1.95
39614470--39614630	52	3.1	52	82	5	209	27	15	24	32	1.95
39614474--39614628	78	2.0	78	83	2	195	27	14	25	32	1.95
39616610--39616662	24	2.3	23	81	12	63	56	13	18	11	1.66
39617680--39617710	7	4.6	7	96	4	55	0	9	64	25	1.24
39619597--39619621	13	1.9	13	100	0	50	40	0	28	32	1.57
39620932--39620974	21	2.0	21	90	0	68	46	0	16	37	1.47
39621413--39621515	25	4.2	25	84	9	115	16	24	21	37	1.93
39621437--39621508	26	2.8	26	89	4	103	15	23	22	38	1.92
39621413--39621539	51	2.6	50	78	12	127	18	24	20	37	1.94
39621413--39621619	25	8.5	24	72	14	95	18	25	20	35	1.95
39623445--39623495	14	3.7	14	80	14	54	43	0	0	56	0.99
39623450--39623487	19	2.1	18	90	5	58	42	0	0	57	0.98
39627275--39627342	30	2.3	30	85	5	86	39	14	10	35	1.80
39627902--39627947	19	2.3	20	88	3	67	67	0	2	30	1.03
39628065--39628257	19	10.4	19	66	22	72	32	2	4	61	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39628097--39628168	21	3.5	21	76	16	71	36	4	4	55	1.38
39628126--39628175	21	2.4	22	83	12	70	36	0	6	58	1.23
39628183--39628263	20	4.1	20	73	13	69	28	0	4	66	1.12
39628177--39628258	38	2.2	38	81	16	91	30	0	3	65	1.09
39628183--39628257	21	3.8	19	75	8	71	28	0	4	68	1.08
39628065--39628274	9	21.4	9	65	19	66	32	2	4	60	1.29
39628240--39628310	38	1.9	37	83	11	92	33	2	2	60	1.26
39632111--39632156	12	3.6	12	80	13	56	60	2	15	21	1.45
39632111--39632156	7	7.2	6	87	7	56	60	2	15	21	1.45
39632449--39632480	3	10.7	3	100	0	64	0	0	68	31	0.90
39632668--39632750	43	1.9	43	90	0	130	42	15	7	34	1.75
39634574--39634638	16	4.1	16	70	5	51	38	12	12	36	1.80
39634606--39634638	15	2.1	17	88	11	52	45	12	9	33	1.73
39637011--39637065	24	2.2	25	87	3	76	21	20	16	41	1.90
39644162--39644219	24	2.4	25	76	5	64	25	17	13	43	1.86
39651550--39651596	21	2.2	22	88	3	69	21	36	19	23	1.95
39657189--39657231	21	2.0	21	86	8	61	41	2	11	44	1.53
39657221--39657279	28	2.1	28	81	6	66	55	1	5	37	1.32
39657228--39657334	28	3.9	28	75	12	91	57	0	2	38	1.19
39657270--39657334	25	2.5	24	82	9	67	63	0	1	35	1.04
39657527--39657651	65	1.9	64	80	9	146	33	3	3	60	1.29
39657493--39657672	95	1.9	96	80	9	215	34	4	3	57	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39657699--39657742	20	2.2	20	88	8	63	36	31	11	20	1.88
39663773--39663819	16	3.0	16	80	20	55	46	0	2	51	1.13
39666144--39666172	6	4.8	6	100	0	58	17	34	31	17	1.93
39676054--39676080	5	5.4	5	100	0	54	77	0	22	0	0.76
39681804--39681844	15	2.7	15	88	3	55	12	0	7	80	0.90
39682929--39683165	116	2.0	116	95	0	429	32	18	13	35	1.90
39683179--39683754	288	2.0	288	92	1	967	29	23	11	34	1.90
39688390--39688884	164	3.0	164	95	0	884	32	15	20	31	1.94
39696559--39696589	16	1.9	16	93	0	53	6	19	25	48	1.72
39709697--39709741	17	2.6	17	82	13	56	46	0	4	48	1.22
39714870--39715156	158	1.8	158	86	3	416	21	11	26	40	1.88
39714858--39715190	158	2.1	158	81	3	411	19	13	24	42	1.88
39715733--39715764	12	2.7	12	90	0	55	43	0	0	56	0.99
39719672--39719741	35	2.0	35	100	0	140	42	25	11	20	1.85
39720988--39721021	16	2.1	16	89	10	52	67	2	0	29	1.05
39728906--39729014	42	2.6	42	86	0	146	48	14	18	18	1.81
39728846--39729027	21	9.0	21	77	5	128	46	16	20	17	1.85
39728987--39729035	21	2.3	21	82	0	62	48	14	22	14	1.79
39730266--39730331	33	2.0	33	96	0	123	31	25	21	21	1.98
39731830--39732170	69	5.0	69	78	4	285	30	27	24	18	1.98
39731914--39732220	69	4.5	67	75	7	206	31	26	22	18	1.97
39731957--39732269	138	2.3	137	80	4	319	32	26	22	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39732030--39732282	69	3.7	69	71	8	201	35	25	20	18	1.95
39732306--39732338	14	2.4	14	100	0	66	39	33	6	21	1.78
39740278--39740328	25	2.0	25	92	0	84	37	0	3	58	1.16
39740487--39740552	23	3.0	22	75	8	71	37	0	1	60	1.06
39740749--39740854	12	10.0	10	84	11	76	68	0	31	0	0.89
39740771--39740841	3	24.3	3	92	5	119	69	0	30	0	0.89
39741013--39741145	60	2.2	59	86	4	151	31	0	12	55	1.38
39741026--39741144	60	2.0	60	93	0	202	33	0	13	52	1.40
39743326--39743424	33	3.0	33	81	0	126	12	43	15	29	1.82
39743715--39743810	27	3.6	27	92	0	156	23	28	23	23	2.00
39751104--39751156	27	2.0	27	88	0	79	24	24	20	30	1.99
39756873--39756960	28	3.1	28	75	15	83	65	1	0	32	1.00
39775964--39776009	23	2.0	22	84	16	58	43	21	0	34	1.53
39776177--39776275	51	1.9	51	91	0	162	33	29	16	21	1.95
39781913--39781946	17	1.9	17	88	5	50	23	0	2	73	0.97
39785213--39785267	16	3.4	16	80	5	58	40	5	23	30	1.77
39785476--39785612	57	2.3	58	79	9	143	56	4	0	38	1.25
39785590--39785632	21	2.0	21	86	9	59	62	2	0	34	1.08
39795672--39795705	3	11.3	3	93	0	50	5	0	61	32	1.20
39795659--39795693	15	2.3	15	95	0	61	11	2	54	31	1.51
39795672--39795708	12	3.1	12	88	0	56	8	0	59	32	1.27
39795725--39795860	27	5.0	27	98	0	254	11	20	29	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39795746--39795845	12	7.6	12	69	18	65	12	22	28	38	1.89
39799355--39799526	48	3.6	48	90	0	227	22	29	21	26	1.99
39801945--39802107	56	2.9	57	81	10	192	55	3	0	41	1.20
39802007--39802049	20	2.1	21	83	12	63	58	2	0	39	1.11
39806249--39806341	36	2.8	32	88	8	125	48	6	4	40	1.48
39806732--39806796	3	21.7	3	83	0	76	27	29	4	38	1.77
39808763--39808788	8	3.2	8	100	0	52	84	0	0	15	0.62
39809251--39809282	15	2.1	15	94	0	55	18	0	3	78	0.89
39809254--39809289	18	1.9	19	88	5	56	19	0	5	75	1.00
39810478--39810518	21	2.0	21	85	0	55	24	36	9	29	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211