genome.fa.s21.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  197  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60794725--60794823	31	3.2	30	71	21	96	42	7	20	30	1.78
60796266--60796363	50	2.0	50	100	0	196	27	16	13	42	1.85
60797853--60797891	21	1.9	21	84	5	53	51	2	0	46	1.14
60810897--60810930	3	11.3	3	93	0	59	70	0	29	0	0.87
60810998--60811023	6	4.3	6	100	0	52	50	0	34	15	1.45
60811585--60811644	29	2.1	29	81	12	70	40	8	10	41	1.69
60822370--60822582	91	2.3	89	81	9	250	32	8	21	37	1.84
60828768--60828815	23	2.1	23	100	0	96	35	25	4	35	1.75
60830553--60830585	14	2.4	14	90	5	50	48	0	6	45	1.27
60830559--60830587	14	2.1	14	100	0	58	41	0	6	51	1.28
60832234--60832353	64	1.9	64	91	3	197	30	15	13	40	1.86
60838992--60839047	28	1.9	30	89	7	89	58	1	10	28	1.41
60840626--60840658	17	1.9	17	100	0	66	15	6	18	60	1.54
60847034--60847753	44	15.6	44	72	12	419	31	19	20	27	1.97
60847078--60847427	94	3.7	94	73	14	288	31	20	21	27	1.97
60846983--60847282	138	2.2	138	87	2	433	30	19	22	28	1.98
60847034--60847681	189	3.5	186	81	6	658	32	19	20	28	1.97
60847216--60847753	95	5.8	94	75	12	446	32	18	20	28	1.96
60847034--60847753	139	5.2	132	74	13	443	31	19	20	27	1.97
60854315--60854363	24	1.9	25	84	12	64	55	2	2	40	1.23
60859511--60859541	9	3.4	9	90	0	53	38	22	12	25	1.90
60860279--60860325	19	2.5	19	83	12	62	61	0	10	27	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60860826--60860877	22	2.4	22	80	0	59	13	23	25	38	1.91
60861107--60861154	21	2.3	21	80	16	55	50	0	18	31	1.48
60863191--60863238	23	2.3	22	86	13	66	54	4	8	33	1.50
60871250--60871320	23	3.1	23	91	4	117	33	28	21	16	1.95
60871249--60871317	22	3.1	22	91	4	111	34	26	21	17	1.95
60883904--60883960	18	3.2	18	76	14	73	36	8	14	40	1.76
60889247--60889292	20	2.2	21	81	14	60	10	6	19	63	1.48
60893504--60893551	21	2.2	21	82	10	53	68	4	27	0	1.07
60893525--60893560	17	2.0	17	89	10	54	72	0	27	0	0.85
60893478--60893551	28	2.8	26	80	8	80	70	5	21	2	1.20
60894409--60894542	40	3.4	39	75	7	128	26	18	23	32	1.97
60897133--60897691	279	2.0	279	95	0	1001	32	14	19	33	1.92
60899114--60899181	33	2.1	33	100	0	136	32	8	17	41	1.80
60903609--60903655	21	2.2	22	92	3	78	21	38	19	21	1.94
60906726--60906769	5	8.8	5	100	0	88	40	0	18	40	1.50
60909463--60909550	28	3.2	26	76	17	72	45	4	0	50	1.22
60909481--60909550	28	2.5	28	82	13	90	48	4	0	47	1.21
60909858--60909953	28	3.2	30	69	11	81	40	6	9	43	1.62
60925359--60925438	30	2.7	30	78	7	99	47	3	2	46	1.34
60925661--60925844	41	4.5	41	86	4	237	15	17	27	39	1.90
60925661--60925884	123	1.8	123	80	5	274	17	17	25	39	1.92
60926255--60926324	16	4.4	16	67	16	56	27	1	21	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60930714--60930752	19	1.9	19	85	10	51	38	0	2	58	1.12
60930788--60930837	9	5.9	9	75	11	52	40	14	2	44	1.56
60930937--60931140	12	17.0	12	64	22	81	50	17	0	30	1.53
60931044--60931149	9	12.4	9	81	11	125	46	18	0	34	1.50
60931050--60931145	25	3.8	25	92	0	156	44	19	0	35	1.51
60931044--60931149	16	6.2	17	78	12	112	46	18	0	34	1.50
60931050--60931149	50	2.0	50	94	0	173	46	19	0	35	1.50
60930996--60931149	34	4.5	33	77	11	118	50	18	0	30	1.51
60936636--60936763	66	2.0	66	87	1	186	39	19	24	16	1.91
60937117--60937363	43	5.7	43	89	1	336	28	19	25	25	1.99
60937117--60937361	129	1.9	130	88	2	377	28	19	26	26	1.99
60943378--60943430	7	7.6	7	83	12	65	13	0	39	47	1.43
60943467--60943592	35	3.7	33	75	12	103	39	0	15	45	1.46
60943485--60943575	35	2.6	34	80	13	105	41	0	15	42	1.47
60945446--60945680	50	4.6	50	77	8	210	28	20	28	23	1.99
60949535--60949593	24	2.5	24	100	0	118	30	15	20	33	1.93
60951082--60951330	50	4.8	50	85	4	284	20	29	24	26	1.99
60951081--60951330	100	2.4	104	88	6	357	20	29	24	26	1.99
60951425--60951455	13	2.4	13	94	0	53	54	12	0	32	1.38
60951668--60951725	30	1.9	30	89	0	89	31	24	3	41	1.71
60955980--60956018	20	2.1	17	86	13	51	61	7	0	30	1.24
60957979--60958018	11	3.6	11	89	0	62	22	25	5	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60957974--60958018	22	2.1	21	91	4	72	26	22	4	46	1.70
60960024--60960401	125	3.0	125	93	3	636	33	22	15	28	1.94
60969066--60969129	31	2.1	30	88	2	92	46	7	10	34	1.68
60969189--60969241	23	2.4	21	76	14	52	39	1	0	58	1.09
60976418--60976456	20	2.0	20	84	0	51	23	17	10	48	1.78
60987307--60987344	20	1.9	20	94	0	67	39	13	13	34	1.83
60987567--60987612	18	2.8	18	84	15	64	0	30	41	28	1.56
61000620--61000648	2	14.5	2	100	0	58	0	0	48	51	1.00
61003672--61003722	19	2.8	18	79	11	59	25	1	5	66	1.24
61005135--61005178	19	2.3	19	80	7	54	31	6	9	52	1.59
61011877--61011903	14	1.9	14	100	0	54	37	0	14	48	1.45
61012130--61012202	20	3.8	20	79	15	73	36	0	4	58	1.17
61012130--61012193	19	3.3	19	82	8	76	39	0	4	56	1.20
61012130--61012193	20	3.2	20	82	8	78	39	0	4	56	1.20
61014230--61014271	20	2.2	20	91	4	68	0	19	2	78	0.86
61014235--61014277	22	1.9	23	90	4	70	0	18	2	79	0.85
61014234--61014273	10	4.0	10	83	0	53	0	15	2	82	0.77
61015894--61016022	43	3.0	43	79	13	156	19	20	28	31	1.97
61019122--61019185	30	2.2	28	81	8	74	20	18	4	56	1.59
61028324--61029930	199	8.2	194	74	17	1214	28	16	20	34	1.94
61067957--61067999	11	3.7	11	85	11	59	55	0	2	41	1.12
61068130--61068162	11	3.1	11	86	8	50	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61070122--61070161	20	2.0	20	95	0	71	30	10	12	47	1.74
61074063--61074116	13	4.1	13	76	11	56	44	5	0	50	1.25
61076456--61076490	18	1.9	18	88	11	54	31	0	5	62	1.18
61081107--61081150	20	2.2	20	83	4	52	29	4	9	56	1.50
61084790--61084837	16	2.8	17	80	17	55	45	0	0	54	0.99
61084795--61084830	18	2.0	18	89	10	56	50	0	0	50	1.00
61090004--61090056	20	2.7	20	88	2	72	64	3	0	32	1.12
61090012--61090066	19	2.8	19	83	8	67	63	1	0	34	1.05
61100270--61100344	8	9.5	8	85	7	57	25	1	0	73	0.91
61100269--61100301	7	4.7	7	100	0	66	27	0	0	72	0.85
61100315--61100344	8	3.8	8	100	0	60	13	0	0	86	0.57
61101936--61102003	33	2.1	30	82	15	75	39	1	2	55	1.24
61111684--61111710	3	9.0	3	100	0	54	33	33	33	0	1.58
61114367--61114398	2	16.0	2	100	0	64	50	0	50	0	1.00
61117562--61117592	15	2.1	15	100	0	62	38	29	12	19	1.89
61117653--61117714	29	2.1	30	82	11	76	35	17	8	38	1.80
61118701--61118732	8	3.8	9	88	12	50	68	0	0	31	0.90
61128881--61128909	14	2.1	14	100	0	58	37	13	13	34	1.85
61130987--61131060	25	2.7	28	75	16	82	60	2	0	36	1.11
61131071--61131121	25	2.0	26	92	3	86	56	1	1	39	1.22
61131397--61131427	15	2.1	15	100	0	62	6	38	6	48	1.55
61134653--61134710	24	2.4	24	94	0	98	53	6	8	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61136971--61137111	55	2.7	54	83	13	165	48	15	7	28	1.71
61138136--61138362	42	5.5	42	85	3	282	26	21	20	31	1.98
61138136--61138362	84	2.7	83	89	4	316	26	21	20	31	1.98
61140823--61140931	42	2.6	42	89	0	164	51	11	9	28	1.68
61144273--61144345	27	2.8	26	88	8	105	34	0	1	64	1.02
61146415--61146444	11	2.7	11	94	0	51	40	3	0	56	1.16
61146390--61146474	41	2.1	42	82	8	104	34	1	0	64	1.01
61148624--61148688	25	2.9	22	75	20	71	46	1	3	49	1.27
61150679--61150718	21	1.9	21	85	10	55	40	7	15	37	1.75
61156810--61156881	35	2.1	35	100	0	144	18	40	5	36	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211