genome.fa.s21.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  119  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37544485--37544542	30	1.9	30	89	0	89	41	3	24	31	1.71
37544754--37544785	13	2.5	13	94	0	55	31	0	12	56	1.37
37544880--37545121	50	4.7	50	86	4	297	26	24	29	19	1.99
37544880--37545129	100	2.4	103	88	6	364	26	24	29	20	1.99
37547324--37547348	13	1.9	13	100	0	50	52	0	0	48	1.00
37547961--37548014	22	2.5	22	81	0	63	62	20	11	5	1.47
37552761--37552799	16	2.2	19	86	13	57	43	5	10	41	1.61
37564514--37564688	82	2.1	81	81	3	190	40	18	6	34	1.78
37571302--37571381	38	2.1	38	97	0	151	26	6	17	50	1.70
37572736--37572817	43	1.9	43	87	9	123	17	19	30	32	1.95
37572744--37572855	43	2.6	43	78	13	113	20	19	28	31	1.97
37579637--37579711	26	3.2	26	60	25	65	32	28	2	37	1.71
37579629--37579718	45	2.0	45	100	0	180	31	31	2	35	1.70
37585148--37585250	41	2.5	41	93	0	170	28	17	23	31	1.97
37594047--37594089	23	1.9	23	85	4	61	53	2	4	39	1.34
37596296--37596343	16	3.0	16	82	11	71	72	0	22	4	1.01
37596290--37596330	22	1.9	21	85	5	55	75	0	19	4	0.98
37596701--37596795	45	2.1	47	84	7	124	45	6	2	46	1.40
37597335--37597394	27	2.2	27	82	11	70	76	5	1	16	1.04
37600712--37600784	36	2.0	36	91	0	119	41	15	20	23	1.90
37604857--37605034	27	6.6	27	83	3	205	26	15	28	29	1.96
37604858--37605013	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37604854--37605034	82	2.2	81	83	2	229	27	15	27	29	1.96
37607017--37607048	3	10.7	3	93	0	55	62	0	3	34	1.11
37607049--37607082	3	11.3	3	93	0	59	32	2	0	64	1.08
37615224--37615305	43	1.9	43	84	0	110	25	28	29	17	1.97
37616505--37616535	7	4.4	7	100	0	62	29	25	0	45	1.54
37621507--37622424	265	3.5	264	81	3	997	38	15	16	29	1.89
37625392--37626321	354	2.6	353	87	3	1320	38	10	17	33	1.85
37626212--37626498	147	2.0	147	84	4	382	36	9	17	36	1.83
37627927--37628221	147	2.0	147	90	2	468	46	5	7	40	1.56
37628684--37628875	103	1.9	103	86	6	282	22	16	14	46	1.83
37628982--37629082	49	2.1	49	86	0	139	13	16	9	59	1.60
37631960--37631993	12	2.8	12	100	0	68	26	14	5	52	1.64
37636821--37636902	43	1.9	43	85	5	112	35	20	10	32	1.88
37636870--37637009	44	3.2	44	81	1	145	25	16	19	38	1.92
37655212--37655265	7	7.9	7	93	4	83	62	0	0	37	0.95
37655212--37655265	20	2.6	21	91	2	83	62	0	0	37	0.95
37655645--37655704	27	2.3	26	80	5	66	30	6	3	60	1.39
37657223--37657253	15	2.1	15	100	0	62	54	12	0	32	1.38
37658542--37658582	11	3.6	11	83	6	55	2	9	2	85	0.78
37664789--37665319	44	12.0	44	77	9	442	31	25	13	29	1.94
37664795--37665319	132	4.0	132	84	4	560	31	25	13	29	1.94
37664865--37665319	176	2.6	176	87	3	621	30	25	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37665215--37665435	111	2.0	111	90	0	343	27	26	14	31	1.94
37665327--37665508	44	4.1	43	76	6	186	29	25	14	30	1.95
37665173--37665474	155	1.9	154	79	9	337	28	26	14	30	1.95
37665345--37665507	88	1.8	89	82	3	213	30	23	15	29	1.96
37666339--37666387	26	1.9	26	88	12	75	61	8	14	16	1.56
37677517--37677757	51	4.7	51	96	0	428	34	15	21	28	1.94
37685948--37686008	33	1.9	33	86	6	90	42	6	3	47	1.45
37688966--37689019	27	2.0	27	82	10	65	53	0	7	38	1.29
37693226--37693265	21	1.9	21	94	0	71	35	10	22	32	1.87
37711908--37712152	43	5.7	43	84	2	296	28	29	18	23	1.98
37712370--37712532	78	2.1	78	100	0	326	53	12	4	28	1.58
37716673--37716924	83	3.0	81	82	4	272	30	14	14	40	1.85
37717045--37717072	14	2.0	14	100	0	56	50	0	0	50	1.00
37717592--37717629	14	2.7	15	84	12	53	44	28	0	26	1.54
37717856--37717959	14	7.3	14	70	20	63	46	32	0	21	1.52
37717870--37717939	21	3.3	20	75	16	61	44	34	0	21	1.53
37717915--37717954	15	2.8	14	85	14	55	50	35	0	15	1.44
37718203--37718366	41	4.0	41	95	1	301	28	31	23	17	1.97
37718203--37718366	83	2.0	82	97	1	310	28	31	23	17	1.97
37718424--37718517	39	2.3	40	82	7	111	24	24	21	29	1.99
37718506--37718531	12	2.2	12	100	0	52	46	30	15	7	1.74
37719475--37719524	17	2.9	17	82	5	57	72	0	8	20	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37720360--37720750	44	8.9	45	76	6	327	27	21	18	32	1.97
37720784--37722012	50	24.6	49	72	6	723	26	20	20	32	1.97
37720795--37722020	100	12.3	100	86	2	1559	26	20	20	32	1.97
37754988--37755108	63	1.9	63	84	3	163	27	27	18	27	1.98
37755742--37755781	5	8.2	5	83	5	55	75	2	2	20	1.04
37756943--37756999	29	1.9	29	85	3	78	28	8	14	49	1.72
37757380--37757414	18	2.0	18	88	5	54	34	2	5	57	1.37
37764646--37764682	9	4.1	9	92	0	65	45	13	10	29	1.77
37765586--37765638	16	3.4	16	70	15	56	24	33	11	30	1.90
37765588--37765648	31	2.0	31	100	0	122	22	32	13	31	1.92
37767158--37767234	19	3.7	19	67	16	55	28	1	3	66	1.17
37769213--37769245	4	8.2	4	100	0	66	24	0	24	51	1.48
37769256--37770235	327	3.0	326	95	0	1762	32	12	26	27	1.92
37770427--37770485	25	2.4	25	91	0	100	22	23	23	30	1.99
37771800--37771907	25	4.3	24	83	4	108	24	22	21	32	1.98
37771800--37771907	50	2.2	50	84	3	137	24	22	21	32	1.98
37771800--37771938	75	1.9	75	81	0	170	25	20	22	31	1.98
37773578--37773825	45	5.5	45	73	8	157	23	17	14	43	1.86
37773610--37773822	89	2.4	90	79	3	216	24	17	15	43	1.87
37773619--37773834	45	4.8	45	74	5	170	23	18	14	44	1.86
37786324--37786375	3	17.3	3	91	0	86	65	1	1	30	1.14
37788096--37788466	132	2.8	132	90	1	566	29	24	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37788430--37788692	132	2.0	132	87	1	375	28	23	15	31	1.95
37788398--37788635	44	5.4	44	68	16	125	28	25	15	31	1.95
37788297--37788643	176	2.0	176	89	2	536	29	24	15	29	1.96
37788473--37788719	132	1.9	132	91	1	406	27	24	15	32	1.95
37788165--37788719	308	1.8	308	89	0	885	28	24	16	30	1.96
37788867--37789654	45	18.1	43	63	18	152	24	23	22	29	1.99
37788833--37789503	87	7.7	87	90	0	1072	23	22	22	30	1.99
37789502--37789674	87	2.0	87	97	0	328	24	24	22	28	1.99
37789108--37789635	132	4.0	132	72	12	528	24	23	22	29	1.99
37791286--37791339	13	4.3	12	79	9	54	5	22	0	72	1.05
37791284--37791322	19	2.0	20	90	5	62	0	30	0	69	0.89
37796325--37796363	3	13.0	3	83	0	51	61	2	5	30	1.31
37799482--37799523	22	2.0	22	90	4	68	59	16	0	23	1.37
37805589--37805668	19	4.5	19	72	17	64	68	1	23	6	1.19
37805586--37805679	34	2.9	33	81	12	113	70	1	22	6	1.16
37805615--37805678	18	3.7	17	75	10	67	70	1	23	4	1.15
37805752--37805805	23	2.3	23	90	3	81	57	14	16	11	1.65
37808993--37809039	15	3.1	15	81	9	51	42	0	2	55	1.12
37836320--37836364	24	1.9	23	86	4	63	22	22	20	35	1.96
37836319--37836370	24	2.2	23	79	3	59	19	23	19	38	1.93
37836329--37836432	24	4.2	24	75	6	93	19	25	20	34	1.96
37836387--37836444	25	2.3	25	85	5	73	22	29	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37863610--37863743	50	2.7	50	85	3	180	22	19	28	29	1.98
37865771--37865961	51	3.8	51	77	11	203	30	27	16	25	1.97
37865769--37865953	101	1.8	102	88	3	284	31	26	17	24	1.97
37869051--37869186	42	3.2	42	73	6	132	25	20	33	20	1.97
37870164--37870697	232	2.2	235	81	7	603	43	7	9	39	1.65
37870264--37870966	255	2.9	235	78	12	574	43	7	8	40	1.65
37870826--37870886	20	3.3	18	76	13	61	49	4	3	42	1.40
37871993--37872018	9	2.9	9	100	0	52	46	11	0	42	1.40
37873812--37873953	70	2.0	70	100	0	284	40	15	31	12	1.85
37875552--37875608	27	2.0	29	83	12	75	35	26	5	33	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211