genome.fa.s21.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  14  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4745311--4745343	15	2.1	17	88	11	52	75	15	6	3	1.11
4745435--4745481	17	2.8	16	81	15	51	44	2	10	42	1.51
4751396--4751520	55	2.3	55	88	0	187	50	17	7	24	1.71
4755581--4755617	17	2.2	17	100	0	74	51	5	13	29	1.63
4762467--4762491	11	2.3	11	100	0	50	92	0	8	0	0.40
4763164--4763267	54	1.9	54	82	7	131	28	18	18	34	1.94
4763138--4763934	143	5.6	143	85	1	1035	27	21	20	31	1.98
4763679--4763782	44	2.3	45	80	6	122	28	21	23	26	1.99
4764795--4764856	27	2.3	27	81	10	65	4	17	1	75	1.05
4765183--4765243	30	2.0	30	100	0	122	21	32	9	36	1.86
4770324--4770377	27	2.0	26	89	10	83	42	33	0	24	1.55
4770846--4770875	3	10.0	3	100	0	60	66	0	0	33	0.92
4771931--4771969	19	2.1	19	85	4	53	79	2	7	10	1.02
4776336--4776381	23	2.0	23	83	12	58	26	0	6	67	1.15
4776336--4776381	11	3.9	12	83	13	60	26	0	6	67	1.15
4778366--4778403	17	2.2	17	95	0	67	39	7	7	44	1.63
4779523--4779551	14	2.0	15	93	6	51	34	6	6	51	1.55
4787602--4787626	3	8.3	3	100	0	50	68	0	0	32	0.90
4792237--4792264	7	4.0	7	100	0	56	57	0	0	42	0.99
4792368--4792392	9	2.8	9	100	0	50	56	0	0	44	0.99
4792960--4793048	44	2.0	44	95	0	160	24	34	8	31	1.87
4794925--4795011	34	2.5	35	90	3	140	31	3	2	63	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4795021--4795076	9	6.7	9	76	13	57	41	14	1	42	1.56
4796567--4796600	11	3.2	11	87	4	52	35	0	2	61	1.11
4801213--4802396	236	5.0	236	89	8	1778	20	25	18	35	1.95
4806571--4806615	22	2.0	22	83	8	56	57	2	0	40	1.11
4810799--4810845	11	4.3	11	84	10	60	23	0	4	72	1.02
4810799--4810855	11	5.3	10	83	8	51	26	1	3	68	1.15
4815548--4816738	238	5.0	238	98	0	2285	20	25	18	35	1.95
4815548--4816738	475	2.5	476	98	0	2312	20	25	18	35	1.95
4820884--4820911	7	4.0	7	100	0	56	57	0	0	42	0.99
4821015--4821039	9	2.8	9	100	0	50	56	0	0	44	0.99
4821608--4821699	44	2.1	44	95	0	166	23	34	8	32	1.86
4823603--4823663	19	3.4	19	66	25	60	32	1	1	63	1.13
4823605--4823691	34	2.5	35	94	1	149	33	3	2	60	1.26
4823703--4823758	16	3.3	17	85	9	78	41	14	1	42	1.56
4823703--4823759	9	6.7	9	80	9	66	42	14	1	42	1.55
4823850--4823913	23	3.0	22	72	21	64	48	20	0	31	1.50
4823966--4824021	24	2.5	21	76	15	67	50	21	1	26	1.59
4823980--4824210	12	19.8	12	67	18	105	52	17	1	28	1.53
4824009--4824363	9	39.9	9	67	20	117	51	17	1	29	1.54
4823988--4824279	91	3.1	94	94	3	502	53	17	1	28	1.51
4824009--4824363	16	20.5	17	65	20	125	51	17	1	29	1.54
4824258--4824363	25	4.2	25	87	0	167	47	18	1	32	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4829910--4829959	21	2.4	21	87	12	68	36	16	44	4	1.66
4830282--4830599	42	7.6	41	75	4	242	32	19	20	27	1.97
4836426--4836463	17	2.2	17	90	0	58	42	7	5	44	1.56
4837583--4837612	15	2.0	15	93	0	51	36	6	6	50	1.55
4842912--4842991	40	2.0	40	100	0	160	32	22	15	30	1.94
4844561--4844585	3	8.3	3	100	0	50	68	0	0	32	0.90
4847587--4847633	11	4.3	11	84	10	60	23	0	4	72	1.02
4847587--4847643	11	5.3	10	83	8	51	26	1	3	68	1.15
4852335--4853525	238	5.0	238	98	0	2321	20	25	18	35	1.95
4856408--4856445	17	2.2	17	95	0	67	42	7	5	44	1.56
4859629--4859751	59	2.0	62	84	4	162	38	20	4	36	1.74
4868033--4868059	14	1.9	14	100	0	54	77	0	0	22	0.76
4869626--4869682	20	2.9	19	75	17	53	15	12	3	68	1.34
4870211--4870239	2	14.5	2	100	0	58	48	0	0	51	1.00
4870415--4870452	17	2.2	17	90	0	58	31	5	0	63	1.17
4872608--4872746	30	4.6	30	81	4	156	35	23	0	41	1.55
4873117--4873149	11	2.8	12	90	9	50	84	0	15	0	0.61
4873402--4873451	20	2.5	20	84	15	68	80	0	20	0	0.72
4873401--4873448	7	6.9	7	83	7	62	81	0	18	0	0.70
4873600--4873648	21	2.3	20	83	10	62	36	4	0	59	1.17
4873797--4873843	20	2.5	20	83	16	64	29	14	8	46	1.74
4874047--4874492	17	24.9	18	75	16	267	31	12	10	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4874038--4874535	35	13.9	34	69	17	180	31	11	11	45	1.76
4873962--4874093	69	1.9	69	80	9	153	43	9	7	39	1.65
4874199--4874242	21	2.1	21	87	8	63	43	9	6	40	1.63
4874037--4874490	18	25.3	19	74	15	186	32	11	11	44	1.76
4874325--4874374	21	2.4	21	81	15	68	42	14	6	38	1.70
4874099--4874455	126	2.8	123	78	12	366	30	12	12	44	1.78
4874418--4874535	52	2.3	51	80	5	130	31	11	11	45	1.76
4874092--4874493	18	22.5	17	76	10	229	31	11	11	45	1.77
4874447--4874547	52	2.0	51	82	5	123	35	9	8	45	1.69
4875250--4875284	14	2.4	15	90	4	54	34	0	0	65	0.93
4876799--4877119	18	17.9	18	74	15	247	41	10	13	33	1.79
4876758--4877097	18	19.3	17	69	12	152	42	10	13	32	1.79
4876799--4877097	35	8.4	34	76	13	184	41	10	14	33	1.80
4876799--4877097	53	5.6	54	76	13	257	41	10	14	33	1.80
4877075--4877186	20	5.5	21	67	22	69	41	8	10	39	1.71
4877075--4877185	21	5.5	20	67	23	72	40	9	10	39	1.72
4877501--4877543	19	2.2	20	87	4	61	0	23	0	76	0.78
4877523--4877551	13	2.2	13	100	0	58	0	24	0	75	0.80
4877500--4877547	18	2.6	19	77	9	55	0	25	0	75	0.81
4877645--4877697	23	2.2	25	90	6	83	1	20	7	69	1.22
4877645--4877704	25	2.7	23	82	15	63	1	18	8	71	1.19
4877759--4877801	21	2.0	21	90	0	68	20	23	34	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4877857--4877900	4	11.8	4	81	18	51	0	25	0	75	0.81
4878413--4878495	29	2.8	29	83	3	103	42	4	19	33	1.72
4878401--4878495	29	3.2	28	77	7	91	41	4	18	35	1.70
4880570--4880635	31	2.1	29	76	15	69	39	13	12	34	1.82
4884641--4884683	17	2.6	17	77	3	52	62	0	2	34	1.08
4887990--4888060	3	23.7	3	100	0	142	0	32	0	67	0.91
4889840--4889889	19	2.7	18	84	9	57	34	2	2	62	1.18
4897193--4897230	20	1.9	20	94	0	67	26	21	2	50	1.62
4905610--4905661	20	2.6	19	79	11	59	53	0	1	44	1.11
4905653--4905678	12	2.2	12	100	0	52	76	0	0	23	0.78
4906209--4906266	10	5.8	10	76	8	55	29	3	3	63	1.27
4906210--4906279	9	7.4	9	74	15	52	27	4	2	65	1.25
4906209--4906279	29	2.5	28	83	2	79	26	4	2	66	1.24
4910754--4910791	17	2.4	16	86	8	51	50	5	2	42	1.39
4913705--4913820	58	2.0	58	100	0	232	15	6	20	56	1.62
4915863--4915966	44	2.3	44	96	1	190	30	3	25	39	1.74
4925253--4925295	22	2.0	22	85	0	59	58	11	9	20	1.61
4931597--4931630	15	2.1	17	89	10	54	44	2	0	52	1.16
4934863--4934921	30	2.0	30	96	0	109	28	28	3	38	1.73
4936661--4936704	18	2.4	18	92	0	70	20	27	9	43	1.82
4940736--4940792	29	2.0	29	89	0	87	42	3	7	47	1.47
4942746--4942810	31	2.1	31	82	5	78	55	4	12	27	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4943337--4943362	5	5.2	5	100	0	52	38	0	0	61	0.96
4945186--4945252	25	2.7	25	79	4	73	35	14	22	26	1.93
4945360--4945429	26	2.7	26	75	2	79	35	21	25	17	1.95
4956898--4956928	4	8.0	4	92	7	55	48	0	0	51	1.00
4956898--4956931	11	3.0	11	91	8	59	47	0	0	52	1.00
4958152--4958200	23	2.1	24	85	7	66	46	4	0	48	1.20
4963773--4963803	16	1.9	16	93	0	53	61	0	3	35	1.12
4964913--4964956	16	2.8	16	96	0	79	27	0	31	40	1.56
4966158--4966210	11	4.7	11	75	11	54	43	3	0	52	1.19
4973618--4973663	20	2.2	22	77	14	53	63	2	0	34	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211