genome.fa.s21.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  188  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58165516--58165662	25	5.8	25	77	13	140	19	29	21	29	1.97
58165527--58165626	27	3.8	27	86	6	152	20	27	20	33	1.97
58165516--58165641	52	2.4	52	90	3	211	18	29	21	30	1.97
58167683--58167713	3	10.3	3	100	0	62	67	0	0	32	0.91
58171108--58171172	31	2.1	30	82	2	76	58	9	3	29	1.44
58171117--58171180	31	2.1	31	81	0	74	54	14	4	26	1.59
58171614--58171638	11	2.3	11	100	0	50	60	0	0	40	0.97
58173763--58173851	38	2.2	41	82	5	103	51	6	4	37	1.49
58179028--58179186	46	3.5	46	88	5	200	21	17	14	46	1.83
58179166--58179287	45	2.7	45	94	0	208	15	18	22	43	1.88
58189873--58189903	16	2.0	16	93	6	55	35	6	12	45	1.68
58189920--58189965	15	3.1	15	81	3	58	17	0	17	65	1.28
58194574--58194717	73	2.0	72	90	4	227	28	17	18	36	1.93
58197977--58198056	40	2.0	40	97	0	151	27	23	2	46	1.65
58198171--58198199	14	2.0	15	93	6	51	31	0	6	62	1.22
58198547--58198592	18	2.5	18	82	10	58	19	0	8	71	1.11
58198626--58198655	15	2.0	15	93	0	51	20	16	6	56	1.62
58198716--58199220	110	4.6	110	94	1	838	30	14	19	34	1.92
58204246--58204331	43	2.0	43	93	0	145	15	37	10	37	1.81
58213418--58213455	16	2.4	16	86	8	51	52	0	0	47	1.00
58213447--58213482	19	1.9	19	88	5	56	38	0	11	50	1.38
58217563--58217600	16	2.5	16	87	8	53	68	2	0	28	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58220227--58220264	15	2.5	15	87	12	51	50	2	2	44	1.30
58220272--58220300	14	2.0	15	93	6	51	37	0	0	62	0.96
58220458--58220534	30	2.5	30	85	10	95	40	0	7	51	1.31
58220615--58220663	17	3.1	16	80	13	57	38	0	0	61	0.96
58220613--58220674	25	2.4	25	83	5	79	41	1	0	56	1.09
58237622--58237831	111	1.9	111	84	3	280	42	7	14	34	1.74
58251255--58251280	3	8.7	3	100	0	52	65	0	0	34	0.93
58261913--58261983	29	2.5	29	97	2	135	39	11	0	49	1.39
58262053--58262119	27	2.5	27	90	0	98	28	28	26	16	1.97
58262480--58262542	18	3.4	18	70	12	65	61	6	3	28	1.36
58262480--58262557	37	2.1	37	97	0	147	62	6	2	28	1.33
58262480--58262573	37	2.5	37	89	3	118	60	7	2	29	1.36
58262712--58262808	29	3.4	28	94	5	160	48	0	13	38	1.43
58263474--58263528	24	2.3	24	81	9	67	47	0	0	52	1.00
58263474--58263520	18	2.7	17	83	6	58	46	0	0	53	1.00
58272605--58272644	21	1.9	21	90	10	64	30	7	0	62	1.23
58272605--58272650	21	2.1	21	84	11	58	30	8	0	60	1.26
58275527--58275551	13	1.9	13	100	0	50	60	24	0	16	1.36
58278560--58278753	106	1.8	106	85	4	275	25	41	18	14	1.88
58279887--58279953	34	1.9	35	87	3	100	44	14	8	31	1.76
58280470--58280561	6	16.0	6	72	15	52	50	0	0	50	1.00
58280469--58280546	12	6.2	12	69	16	59	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58280449--58280546	52	1.9	51	93	2	169	52	1	0	46	1.07
58280460--58280546	26	3.3	26	75	15	99	54	1	0	44	1.07
58280449--58280562	52	2.3	51	87	7	162	48	0	0	50	1.06
58297839--58298026	100	1.9	100	93	0	322	40	3	24	31	1.71
58301623--58301662	19	2.0	20	90	4	64	40	7	0	52	1.30
58302681--58302745	33	1.9	33	82	14	80	41	13	4	40	1.66
58305309--58305343	12	2.9	12	91	0	52	68	0	0	31	0.90
58309204--58309249	24	1.9	24	95	0	83	41	15	13	30	1.85
58311598--58311627	14	2.1	14	93	0	51	40	0	0	60	0.97
58316650--58316680	7	4.6	7	96	4	55	16	0	0	83	0.64
58326155--58326208	24	2.2	23	87	9	72	55	3	3	37	1.35
58326661--58326738	31	2.6	30	81	4	95	43	10	15	30	1.80
58326609--58326774	88	1.9	89	81	6	203	45	12	18	23	1.83
58331516--58331567	26	2.0	26	92	0	86	40	5	0	53	1.25
58335975--58336015	5	8.2	5	83	0	55	75	4	2	17	1.08
58348516--58348576	30	2.0	30	96	0	113	26	36	4	32	1.78
58353497--58353537	21	2.0	21	85	0	55	29	4	4	60	1.38
58355975--58356077	42	2.5	42	91	0	161	35	8	12	42	1.74
58356010--58356077	20	3.3	20	69	15	66	36	7	13	42	1.72
58356137--58356215	31	2.6	30	80	4	86	44	3	11	40	1.58
58356198--58356238	21	2.0	21	95	4	75	56	4	9	29	1.53
58358742--58358801	23	2.7	23	82	12	63	53	3	0	43	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58359894--58359939	23	2.0	23	91	0	74	39	10	6	43	1.66
58360008--58360117	39	2.8	39	76	5	114	34	20	21	23	1.97
58360165--58360314	41	3.7	40	83	5	192	20	22	26	31	1.98
58360855--58360924	17	3.9	17	69	20	61	21	2	44	31	1.67
58360834--58360924	38	2.4	38	85	7	139	20	3	42	32	1.69
58361878--58361925	20	2.3	22	75	13	57	41	2	4	52	1.32
58362016--58362092	17	4.4	17	74	15	68	19	2	45	32	1.64
58361994--58362085	38	2.4	38	85	8	132	18	3	44	33	1.66
58362432--58362471	13	3.1	14	86	13	59	75	0	7	17	1.03
58364918--58365041	65	1.9	65	91	0	203	31	20	29	18	1.97
58366753--58366824	31	2.3	31	80	0	81	43	12	9	34	1.76
58370925--58370958	17	2.0	17	94	0	59	26	5	0	67	1.13
58393754--58393805	21	2.5	21	96	0	95	9	23	11	55	1.64
58393734--58393816	21	3.8	21	83	4	85	13	24	10	51	1.72
58393866--58393905	19	2.1	19	100	0	80	25	30	22	22	1.99
58394241--58394292	16	3.4	16	73	10	63	50	5	21	23	1.70
58394230--58394304	30	2.5	30	91	0	123	44	5	26	24	1.75
58394510--58394548	18	2.2	17	86	13	53	33	0	20	46	1.51
58394766--58394818	23	2.3	23	80	0	70	22	20	24	32	1.98
58412619--58412663	16	2.7	16	82	6	54	2	15	2	80	0.92
58412624--58412663	16	2.4	16	84	15	55	0	17	2	80	0.83
58414388--58414424	9	4.1	9	89	0	56	45	10	10	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58414776--58414821	18	2.6	17	80	19	51	21	32	0	45	1.52
58420993--58421019	11	2.5	11	100	0	54	25	40	7	25	1.82
58424228--58424518	156	1.9	155	87	2	431	38	16	12	31	1.86
58427308--58427719	125	3.3	125	90	0	655	33	19	19	27	1.96
58430927--58431191	49	5.4	49	95	0	458	46	7	2	43	1.47
58431313--58431352	21	1.9	21	89	0	62	7	20	42	30	1.79
58431740--58431807	30	2.3	31	79	7	77	14	16	39	29	1.88
58433410--58433457	10	4.8	10	80	10	53	66	2	0	31	1.03
58439957--58440036	29	2.8	28	84	5	115	31	20	7	41	1.80
58440383--58440429	16	2.9	16	84	12	53	78	0	21	0	0.75
58440382--58440432	10	5.1	10	83	7	52	80	0	19	0	0.71
58440689--58440731	12	3.5	13	87	6	63	79	0	20	0	0.74
58440690--58440743	11	4.7	12	84	9	67	77	0	22	0	0.76
58440690--58440739	12	4.5	11	85	11	59	78	0	22	0	0.76
58440699--58440746	9	4.7	10	80	19	55	79	0	20	0	0.74
58441060--58441193	18	7.6	17	71	12	67	38	11	8	41	1.72
58441062--58441136	18	4.3	18	86	6	102	38	14	10	36	1.81
58446841--58446926	41	2.1	41	91	0	136	22	26	20	30	1.98
58446857--58446934	41	1.9	41	94	0	138	23	28	20	28	1.99
58446861--58446954	41	2.3	41	84	0	116	25	26	19	28	1.98
58448681--58448705	13	1.9	13	100	0	50	40	24	4	32	1.73
58451754--58451810	17	3.3	17	79	16	64	40	12	10	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58451753--58451867	17	6.5	18	66	16	62	40	9	8	41	1.69
58451755--58451812	18	3.4	16	77	15	55	37	12	10	39	1.77
58455308--58455404	42	2.3	42	87	0	140	39	10	25	24	1.87
58460370--58460414	15	2.7	18	74	25	53	44	2	8	44	1.47
58475712--58475757	20	2.3	20	84	0	56	34	0	13	52	1.40
58477101--58477156	23	2.6	21	86	10	85	23	32	0	44	1.53
58477101--58477167	11	6.2	10	75	16	62	25	31	0	43	1.55
58478841--58478883	18	2.4	18	84	0	50	18	25	9	46	1.79
58479856--58480146	126	2.3	126	89	2	442	27	20	19	32	1.97
58480228--58480387	48	3.4	47	66	17	132	38	18	1	41	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211