genome.fa.s21.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  95  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29799130--29799386	47	5.4	47	90	3	356	32	8	30	27	1.87
29802382--29802489	15	7.2	15	69	12	87	25	23	7	43	1.79
29802372--29802495	30	4.1	30	95	1	212	25	25	6	42	1.78
29807047--29807140	30	3.1	30	92	1	143	26	24	6	42	1.78
29807057--29807134	15	5.2	15	71	11	70	26	21	7	43	1.80
29809149--29809333	40	4.7	40	81	9	218	24	28	22	23	1.99
29809151--29809333	79	2.3	80	83	7	221	24	28	22	24	2.00
29820869--29821052	78	2.3	81	82	8	209	25	27	22	24	2.00
29820850--29821052	40	5.1	40	81	9	220	25	27	22	25	2.00
29823152--29823542	27	14.5	27	81	4	432	18	19	19	42	1.89
29823153--29823562	81	5.1	81	82	2	486	18	19	19	42	1.89
29823467--29823554	27	3.3	26	79	9	97	18	20	20	40	1.91
29825995--29826104	40	2.8	40	78	6	125	41	20	16	21	1.90
29826181--29826286	41	2.6	41	86	3	133	25	19	25	29	1.99
29829626--29830037	23	18.0	23	72	12	242	31	5	21	41	1.76
29829652--29830029	114	3.3	114	88	2	537	30	6	21	41	1.77
29829852--29830029	91	1.9	92	83	5	227	30	5	21	42	1.75
29830898--29831164	43	6.2	43	84	4	333	24	17	26	31	1.97
29830898--29831164	129	2.1	129	86	5	371	24	17	26	31	1.97
29831103--29831185	43	1.9	43	82	0	103	26	21	24	27	1.99
29846155--29846377	40	5.6	40	84	5	238	26	20	27	26	1.99
29846238--29846412	79	2.2	80	83	4	212	26	20	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29852613--29852860	47	5.3	47	98	0	469	30	7	31	30	1.85
29852833--29852935	27	4.0	27	69	12	99	31	9	31	28	1.89
29852645--29852935	76	4.0	74	70	12	260	30	8	31	29	1.87
29852860--29853233	47	7.8	47	95	3	658	32	8	29	29	1.87
29852860--29853233	96	3.9	95	95	2	662	32	8	29	29	1.87
29852860--29853233	143	2.6	142	95	2	660	32	8	29	29	1.87
29852615--29853136	266	2.0	262	94	1	918	31	8	30	30	1.86
29855261--29855337	39	1.9	39	89	2	118	24	20	28	25	1.99
29855221--29855535	40	7.9	40	82	4	266	25	21	27	25	2.00
29858894--29859587	47	14.5	47	95	1	1084	32	9	29	28	1.88
29858955--29859077	22	5.3	22	62	11	66	30	9	30	29	1.89
29858977--29859055	25	3.3	25	64	10	65	31	5	30	32	1.79
29858896--29859587	143	4.8	142	93	2	1079	32	9	29	28	1.88
29859294--29859416	22	5.3	22	62	11	66	30	11	30	27	1.91
29863152--29863186	18	1.9	18	94	0	61	22	8	5	62	1.45
29863151--29863189	18	2.2	17	86	8	60	20	7	5	66	1.36
29872296--29872767	49	9.7	47	92	4	678	32	8	30	29	1.87
29872351--29872767	49	8.7	49	93	3	685	32	8	30	29	1.86
29872351--29872767	96	4.4	96	94	2	709	32	8	30	29	1.86
29872886--29872964	37	2.1	37	88	0	113	25	18	30	25	1.98
29879427--29879492	33	2.0	33	87	0	96	33	9	24	33	1.87
29890535--29890584	25	2.1	25	81	7	59	26	18	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29892920--29892978	11	5.2	11	75	20	50	42	0	35	22	1.54
29893082--29893111	14	2.1	15	93	6	53	10	6	13	70	1.34
29900736--29900774	21	1.9	20	84	5	51	56	5	0	38	1.22
29914311--29914351	19	2.2	19	86	8	57	21	4	2	70	1.18
29916330--29916365	16	2.2	17	90	5	56	36	0	52	11	1.37
29920390--29920446	19	3.0	20	80	14	59	57	8	1	31	1.39
29924113--29924212	42	2.3	42	94	3	173	34	14	21	31	1.92
29932079--29932343	102	2.6	103	88	4	410	18	21	29	31	1.96
29938535--29938591	26	2.2	26	83	3	69	17	19	19	43	1.88
29946277--29946499	40	5.6	40	84	3	236	26	28	20	24	1.99
29953542--29953764	40	5.6	40	84	3	236	26	28	20	24	1.99
29976172--29976356	51	3.7	50	78	6	169	25	18	26	29	1.98
29976172--29976356	101	1.8	102	87	5	277	25	18	26	29	1.98
29976360--29976458	46	2.2	43	81	12	110	24	19	24	32	1.97
29976582--29976613	16	2.0	16	93	0	55	59	0	15	25	1.36
29980957--29981103	40	3.7	40	83	5	120	25	27	21	25	2.00
29981003--29981183	80	2.3	80	83	9	219	27	27	20	23	1.99
29981000--29981183	40	4.6	40	81	7	196	28	27	20	23	1.99
29987499--29987595	29	3.5	28	87	6	126	24	13	29	31	1.93
29987526--29987608	27	3.0	26	84	10	78	28	12	26	32	1.92
30005623--30005720	27	3.5	28	90	2	135	26	13	28	31	1.94
30005651--30005733	27	3.0	27	87	5	96	30	12	25	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30005623--30005734	28	4.0	27	83	6	98	28	12	25	33	1.92
30007999--30008054	20	2.8	20	81	10	78	23	26	0	50	1.50
30010748--30010857	43	2.6	43	88	4	161	36	24	17	21	1.94
30010748--30010871	43	2.9	43	85	7	155	37	24	16	22	1.94
30011266--30011324	30	2.0	30	86	0	82	28	25	5	40	1.77
30014165--30014245	41	2.0	42	82	7	103	30	22	14	32	1.94
30015282--30019757	797	5.6	797	92	0	7451	36	20	9	33	1.85
30036496--30036721	40	5.7	40	87	8	243	24	25	21	27	1.99
30036496--30036721	80	2.8	80	83	9	282	24	25	21	27	1.99
30036496--30036721	120	1.9	120	82	10	284	24	25	21	27	1.99
30038919--30039057	50	2.8	50	77	2	127	24	28	20	26	1.99
30044306--30044344	20	1.9	21	89	5	62	76	5	7	10	1.13
30044326--30044366	15	2.6	15	88	7	55	75	0	9	14	1.04
30044303--30044364	17	3.5	17	82	10	79	77	3	9	9	1.10
30046633--30046663	14	2.3	14	94	5	55	77	3	19	0	0.90
30058732--30058915	78	2.3	80	84	8	234	24	22	27	25	2.00
30058733--30058915	40	4.6	40	82	10	207	24	22	27	25	2.00
30066924--30067108	40	4.6	39	83	5	203	24	22	27	25	2.00
30066924--30067108	79	2.3	81	83	7	227	24	22	27	25	2.00
30066977--30067141	79	2.1	79	83	6	201	26	21	26	25	1.99
30070275--30070323	20	2.5	20	81	15	66	12	24	6	57	1.58
30070577--30070705	50	2.6	50	82	0	141	20	27	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30070596--30070720	50	2.5	50	81	0	133	20	27	24	28	1.99
30071472--30071496	11	2.3	11	100	0	50	76	8	0	16	1.02
30082767--30083064	50	5.9	50	80	5	278	23	28	20	27	1.99
30084376--30084408	15	2.2	15	89	10	50	54	0	33	12	1.37
30086353--30086405	23	2.2	24	77	9	56	30	13	13	43	1.82
30096101--30096227	59	2.2	59	92	1	211	47	10	14	28	1.76
30097011--30097051	21	2.0	21	85	0	55	36	12	9	41	1.76
30097059--30097098	21	1.9	21	89	0	62	30	12	0	57	1.36
30097382--30097419	20	2.0	19	90	10	60	5	23	0	71	1.07
30097673--30097697	11	2.3	11	100	0	50	64	8	0	28	1.22
30098350--30098397	11	5.0	9	80	19	53	25	4	0	70	1.04
30101226--30101345	56	2.1	56	100	0	240	44	9	24	22	1.82
30102470--30102692	78	2.8	80	83	6	276	24	21	27	25	1.99
30102471--30102692	40	5.6	39	83	8	254	24	22	27	25	2.00
30102523--30102725	78	2.6	78	83	6	234	26	20	27	25	1.99
30109166--30109290	56	2.2	56	98	0	241	45	9	22	22	1.81
30110484--30110708	40	5.7	40	86	5	296	24	22	28	25	2.00
30110484--30110741	119	2.2	119	81	6	292	25	21	27	25	1.99
30114276--30114324	19	2.5	19	81	18	57	73	4	4	18	1.15
30114276--30114327	20	2.7	19	80	11	61	73	3	3	19	1.15
30118229--30118281	4	13.2	4	95	0	70	0	56	0	43	0.99
30120458--30120506	23	2.1	23	84	0	62	16	10	6	67	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30120423--30120506	23	4.1	19	72	14	53	17	10	5	65	1.43
30120620--30120673	20	2.8	20	83	8	58	14	14	5	64	1.45
30120638--30120685	20	2.4	20	85	0	60	16	12	4	66	1.39
30120794--30120833	20	2.0	20	90	0	62	27	17	0	55	1.43
30121706--30121731	7	3.7	7	100	0	52	57	0	0	42	0.98
30125260--30125335	27	2.8	27	81	0	98	32	15	28	22	1.95
30130327--30130617	28	10.4	27	81	6	237	24	21	18	35	1.95
30130351--30130617	56	4.7	55	83	2	291	23	21	18	35	1.96
30130327--30130601	84	3.3	84	80	4	304	24	20	18	36	1.95
30133226--30133252	6	4.5	6	100	0	54	85	0	0	14	0.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211