genome.fa.s21.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  20  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6257995--6258051	22	2.8	20	81	7	69	28	0	5	66	1.13
6258557--6258591	15	2.3	15	90	0	52	77	2	2	17	1.02
6258550--6258605	15	3.5	15	76	13	51	73	1	7	17	1.15
6259560--6259598	17	2.4	17	86	4	53	64	0	0	35	0.94
6259541--6259700	10	17.3	9	65	16	53	58	1	3	36	1.25
6260140--6260225	40	2.2	40	89	0	127	37	2	5	54	1.37
6261744--6261777	16	2.1	16	94	0	59	50	5	11	32	1.63
6262427--6262533	41	2.6	40	91	5	162	23	20	22	33	1.97
6262515--6262555	16	2.6	16	88	0	64	14	24	24	36	1.93
6265042--6265113	26	2.7	28	78	10	78	12	9	5	72	1.27
6265073--6265130	19	3.1	19	82	12	66	13	5	3	77	1.07
6265142--6265186	10	4.4	10	78	15	56	37	0	2	60	1.09
6265133--6265227	22	4.2	22	70	15	68	35	0	1	63	1.02
6265135--6265229	24	4.0	23	78	12	95	37	0	1	61	1.03
6265279--6265353	22	3.5	21	75	18	66	40	2	1	56	1.22
6267325--6267350	13	2.0	13	100	0	52	38	0	7	53	1.30
6271520--6271563	18	2.4	19	92	3	72	38	9	0	52	1.33
6271803--6271892	24	3.8	24	78	17	84	74	8	10	6	1.22
6275273--6275394	23	5.3	23	87	0	181	30	26	20	22	1.98
6275273--6275394	46	2.7	46	94	0	208	30	26	20	22	1.98
6284056--6284326	144	1.9	145	94	1	481	48	6	17	27	1.72
6286345--6286503	44	3.5	44	86	11	237	32	15	23	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6286396--6286508	51	2.2	51	95	0	199	34	15	22	28	1.94
6287562--6287590	14	2.1	14	93	6	51	34	13	20	31	1.92
6288970--6289052	32	2.6	32	86	0	112	44	18	8	28	1.78
6292918--6292950	17	1.9	17	88	11	50	45	3	9	42	1.51
6293102--6293187	42	2.0	42	100	0	172	30	12	6	50	1.67
6294818--6294850	17	1.9	17	93	0	57	36	6	0	57	1.23
6294909--6294955	19	2.5	19	80	16	62	68	4	0	27	1.08
6296735--6296799	31	2.1	31	91	5	105	53	3	9	33	1.48
6299747--6299772	13	2.0	13	100	0	52	30	15	0	53	1.42
6308061--6308094	16	2.2	16	89	5	52	58	14	2	23	1.50
6312048--6312100	23	2.4	22	76	20	56	9	18	1	69	1.25
6314981--6315011	12	2.6	12	94	0	53	83	3	0	12	0.75
6315336--6315388	18	2.9	18	74	2	52	56	7	3	32	1.45
6315376--6315420	23	2.0	22	86	4	63	62	4	0	33	1.15
6316556--6316582	14	1.9	14	100	0	54	40	22	0	37	1.54
6317615--6317639	12	2.1	12	100	0	50	24	8	24	44	1.80
6317695--6317736	12	3.5	12	75	12	50	23	9	2	64	1.35
6317691--6317742	24	2.2	24	100	0	104	25	7	5	61	1.45
6318834--6318891	26	2.2	26	96	0	107	24	6	27	41	1.80
6324018--6324124	36	3.0	36	86	5	128	16	13	28	41	1.86
6336123--6336171	22	2.2	22	85	7	64	18	12	46	22	1.82
6336326--6336391	17	4.1	16	74	18	66	74	0	4	21	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6336327--6336391	21	3.0	21	80	14	80	73	0	4	21	1.00
6336329--6336382	18	3.1	17	84	7	65	74	0	5	20	1.02
6336326--6336390	4	15.5	4	79	17	62	73	0	4	21	1.00
6336325--6336390	26	2.6	25	84	13	82	72	0	4	22	1.02
6336326--6336393	22	3.1	21	80	16	77	73	0	4	22	1.01
6336326--6336393	18	3.5	18	73	18	57	73	0	4	22	1.01
6340334--6340369	15	2.5	14	86	8	54	44	8	0	47	1.33
6344183--6344213	15	2.1	15	100	0	62	48	0	0	51	1.00
6344194--6344256	11	5.6	11	69	3	54	53	0	1	44	1.10
6344194--6344252	23	2.6	22	84	5	82	54	0	1	44	1.10
6345159--6345198	20	2.0	20	95	4	73	57	7	5	30	1.48
6345928--6345993	21	3.3	19	79	10	62	71	4	4	19	1.22
6351268--6351314	16	2.9	16	84	6	51	40	4	25	29	1.75
6351465--6351597	59	2.3	57	87	6	187	50	4	2	42	1.35
6351476--6351631	59	2.6	59	84	9	185	51	3	2	41	1.33
6351877--6351922	22	2.1	22	95	0	83	36	10	32	19	1.87
6352385--6352490	54	2.0	53	94	3	187	50	17	10	21	1.76
6356363--6356388	7	3.7	7	100	0	52	26	0	15	57	1.38
6359384--6359580	41	4.8	41	90	5	299	28	21	22	27	1.99
6359384--6359634	123	2.0	124	81	6	287	29	20	23	26	1.99
6359794--6359890	33	2.8	33	84	7	106	29	10	22	37	1.87
6366582--6366778	41	4.8	41	91	5	308	28	21	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6366582--6366832	123	2.0	124	81	6	296	29	20	23	26	1.99
6366992--6367088	33	2.8	33	84	7	106	29	10	22	37	1.87
6370322--6370864	127	4.3	127	90	0	847	25	19	19	35	1.95
6370322--6370864	253	2.1	253	90	1	865	25	19	19	35	1.95
6371062--6371107	22	2.0	23	87	4	67	54	34	0	10	1.36
6377852--6378048	98	2.0	98	93	0	340	38	23	9	28	1.86
6379376--6379507	19	6.8	19	88	3	201	37	15	10	37	1.82
6379369--6379506	59	2.4	59	89	4	203	37	14	10	37	1.80
6392824--6392880	3	19.0	3	100	0	114	33	0	0	66	0.92
6393157--6393185	2	14.5	2	100	0	58	51	48	0	0	1.00
6395902--6395943	17	2.6	16	78	17	50	57	9	0	33	1.31
6396549--6396579	9	3.4	9	90	0	53	38	22	12	25	1.90
6402589--6402671	41	2.0	41	92	0	139	28	20	12	38	1.88
6407093--6407123	15	2.0	16	93	6	55	19	0	6	74	1.03
6409683--6409738	23	2.5	22	83	13	62	73	0	1	25	0.93
6414313--6414349	19	2.0	19	89	5	58	40	0	8	51	1.32
6417673--6417715	14	3.2	13	75	12	50	23	11	39	25	1.88
6418441--6418498	23	2.5	23	77	0	62	44	20	24	10	1.82
6421222--6421352	59	2.3	58	81	7	142	23	16	18	41	1.89
6422232--6422289	20	2.8	20	84	2	62	41	1	12	44	1.51
6422243--6422289	20	2.3	20	89	7	69	42	2	10	44	1.51
6429513--6429542	8	3.8	8	100	0	60	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6438383--6438449	22	3.0	22	88	2	98	40	7	16	35	1.77
6438393--6438459	22	3.0	23	84	4	84	37	7	14	40	1.75
6440196--6440511	109	2.9	108	85	3	438	28	17	18	34	1.94
6440196--6440511	108	2.9	109	86	2	433	28	17	18	34	1.94
6443934--6444028	20	4.7	19	71	15	66	80	4	10	5	1.02
6443947--6444028	30	2.7	30	81	7	103	80	4	8	6	1.01
6444893--6444951	7	8.7	7	88	7	95	69	0	15	15	1.19
6444886--6444948	13	4.8	13	86	5	92	71	0	14	14	1.15
6444886--6444951	27	2.5	27	90	4	100	69	0	15	15	1.19
6444893--6444951	20	2.9	21	90	7	95	69	0	15	15	1.19
6446373--6447067	219	3.2	219	90	1	1072	30	19	21	27	1.98
6446502--6448021	87	17.4	88	70	11	683	30	19	22	27	1.98
6446199--6448020	131	13.9	130	72	8	876	30	19	22	27	1.98
6446984--6448149	218	5.3	214	84	4	889	29	19	23	27	1.98
6446199--6447803	262	6.1	261	77	7	1125	30	19	22	27	1.98
6447993--6448239	44	5.7	45	72	9	163	31	22	21	25	1.98
6446547--6448020	480	3.1	479	91	1	2371	30	19	22	27	1.98
6447989--6448263	129	2.1	128	89	2	415	29	22	21	26	1.99
6448078--6448319	41	5.8	41	72	13	168	29	21	21	28	1.98
6450526--6450839	108	2.9	109	84	4	404	29	16	19	35	1.93
6451216--6451291	36	2.1	36	80	11	84	38	9	1	51	1.42
6452987--6453035	19	2.5	20	80	9	66	22	8	2	67	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6453260--6453359	18	5.2	18	70	17	67	21	52	9	18	1.72
6453270--6453381	30	3.7	30	78	7	111	20	51	7	20	1.70
6453336--6453562	42	5.6	42	72	11	168	19	52	8	19	1.70
6453288--6453484	72	2.7	75	85	5	258	18	51	9	20	1.73
6453399--6453586	30	6.3	30	71	14	120	20	53	6	18	1.67
6453299--6453484	75	2.5	71	85	6	246	18	50	9	21	1.74
6453270--6453519	75	3.4	73	73	8	206	19	52	8	19	1.71
6453453--6453573	21	5.8	21	70	11	86	20	56	7	15	1.64
6453516--6453658	30	4.5	30	70	19	101	16	53	9	20	1.71
6453588--6453805	72	3.0	71	82	5	258	16	52	11	19	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211