genome.fa.s21.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  166  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51702995--51703048	19	2.8	19	97	0	99	37	9	16	37	1.81
51703008--51703071	19	3.0	22	86	8	80	37	6	17	39	1.75
51703037--51703081	23	2.0	23	86	4	65	33	4	15	46	1.66
51703613--51703661	3	16.0	3	80	19	57	32	2	2	63	1.17
51704218--51704259	19	2.2	20	86	4	59	33	7	9	50	1.62
51709764--51709817	19	2.9	18	81	8	63	31	29	20	18	1.96
51710352--51710380	12	2.4	12	100	0	58	58	0	0	41	0.98
51715689--51715741	24	2.2	24	89	0	79	37	3	9	49	1.53
51715696--51715752	24	2.4	24	85	5	71	36	5	10	47	1.61
51717945--51718011	34	1.9	35	87	3	100	44	14	8	31	1.76
51720534--51720585	24	2.2	24	85	0	68	34	3	11	50	1.57
51729870--51730203	27	12.4	27	86	2	447	43	20	15	19	1.88
51730432--51730491	26	2.3	27	80	8	79	23	20	21	35	1.96
51730591--51730683	28	3.4	28	89	1	143	23	23	21	31	1.99
51732394--51732425	15	2.2	15	94	5	57	56	6	0	37	1.25
51732417--51732457	19	2.2	19	86	4	57	46	9	17	26	1.79
51735588--51735655	18	3.5	18	68	24	57	70	5	20	2	1.21
51735951--51735986	18	1.9	19	88	5	56	38	0	30	30	1.58
51742442--51742473	16	2.0	16	100	0	64	31	0	43	25	1.55
51742782--51742839	30	2.0	30	83	10	75	48	6	6	37	1.57
51751322--51751372	7	7.3	7	100	0	102	56	0	0	43	0.99
51753555--51753613	30	2.0	30	86	0	82	33	28	27	10	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51756769--51756849	39	2.1	39	100	0	162	29	2	25	41	1.68
51756907--51757066	42	3.8	42	78	3	144	23	18	20	38	1.93
51759587--51759640	27	2.0	27	88	0	81	22	20	16	40	1.91
51762942--51763372	97	4.4	98	79	5	412	22	32	19	26	1.97
51762942--51763368	50	8.7	49	78	6	379	22	31	18	27	1.97
51762944--51763368	147	2.9	146	82	4	520	22	32	18	27	1.97
51768829--51768875	16	3.0	16	76	14	53	31	6	4	57	1.43
51775618--51775774	56	2.8	56	94	0	260	45	15	8	30	1.76
51787542--51787567	7	3.7	7	100	0	52	15	30	11	42	1.82
51790934--51790991	25	2.3	26	88	5	84	13	18	22	44	1.85
51791079--51791151	26	2.9	27	83	6	91	15	21	24	38	1.92
51791188--51791305	48	2.4	49	80	8	132	22	27	17	32	1.96
51791233--51791317	25	3.4	25	68	1	64	23	29	16	30	1.96
51795139--51795236	42	2.3	42	80	3	108	19	32	19	28	1.96
51801368--51801442	32	2.3	32	82	8	91	44	20	2	33	1.65
51801542--51801603	16	3.9	16	70	6	54	43	16	6	33	1.73
51802187--51802242	28	2.0	28	96	0	103	58	0	16	25	1.37
51807732--51808101	181	2.0	181	97	0	704	26	15	18	38	1.92
51809312--51809336	3	8.3	3	100	0	50	36	0	0	64	0.94
51810535--51810677	70	2.1	69	93	1	241	39	5	16	39	1.72
51811395--51811444	24	2.1	24	92	0	82	14	34	14	38	1.85
51811431--51811489	24	2.6	22	77	12	66	22	33	11	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51811509--51811560	9	5.8	9	90	0	86	36	32	19	11	1.87
51811509--51811557	18	2.7	18	100	0	98	36	34	16	12	1.86
51811799--51811860	30	2.0	32	84	9	83	17	20	41	19	1.90
51814367--51814482	56	2.1	56	88	3	171	44	10	20	24	1.82
51814618--51814756	69	2.0	69	98	0	269	38	22	15	24	1.92
51814852--51814897	22	2.1	22	95	0	83	19	15	4	60	1.51
51821373--51821482	42	2.6	41	83	7	123	42	18	22	16	1.88
51821379--51821512	42	3.2	42	78	4	110	43	16	21	18	1.88
51821491--51821537	20	2.3	21	81	7	60	46	14	14	23	1.82
51821394--51821532	21	6.7	20	68	15	77	42	15	22	19	1.89
51823241--51823320	43	1.9	42	85	12	112	48	0	3	47	1.19
51823290--51823332	5	9.0	5	83	16	56	41	0	0	58	0.98
51823292--51823333	7	5.9	7	84	15	59	42	0	0	57	0.99
51824307--51824371	22	3.0	22	76	13	62	20	24	15	40	1.91
51827699--51827731	5	7.0	5	90	10	52	42	0	0	57	0.98
51828712--51828761	22	2.3	22	82	10	66	16	24	20	40	1.91
51835184--51835217	14	2.6	14	90	9	54	23	8	26	41	1.83
51835131--51835328	51	3.9	50	80	4	193	26	14	27	31	1.94
51838035--51838122	42	2.1	42	80	4	97	37	14	28	19	1.91
51838072--51838148	21	3.7	21	73	5	75	37	12	31	18	1.88
51838066--51838166	42	2.4	42	81	6	107	40	12	27	18	1.88
51841094--51841153	26	2.2	27	82	8	77	28	11	28	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51844919--51845000	36	2.3	36	91	0	128	28	10	19	41	1.85
51845154--51845182	13	2.2	13	100	0	58	31	13	6	48	1.69
51845059--51845271	108	2.0	108	89	0	327	32	16	13	37	1.87
51845167--51845806	131	4.9	132	86	1	734	32	14	12	40	1.83
51844957--51845402	239	1.9	239	86	0	649	32	14	13	39	1.85
51845245--51845571	64	5.0	64	64	12	189	31	13	12	42	1.81
51845261--51845471	67	3.2	67	68	11	209	32	13	11	42	1.80
51845296--51845507	67	3.2	67	66	11	184	29	11	13	45	1.79
51858971--51859019	2	24.5	2	100	0	98	48	0	51	0	1.00
51859937--51860023	29	3.1	30	76	15	78	57	3	0	39	1.16
51860452--51860495	21	2.0	23	82	13	56	27	0	4	68	1.09
51860479--51860511	11	2.8	12	86	9	50	24	0	3	72	0.98
51860600--51860639	17	2.3	17	86	4	53	25	2	0	72	0.97
51862243--51862274	15	2.1	15	94	0	55	15	12	9	62	1.54
51862450--51862858	202	2.0	202	92	0	674	31	12	20	34	1.91
51863648--51863678	9	3.3	9	95	4	53	58	0	0	41	0.98
51870468--51870504	6	6.3	6	96	3	67	0	13	51	35	1.41
51870600--51870639	10	4.0	10	86	0	53	40	2	57	0	1.12
51874266--51874323	29	2.0	28	83	12	73	29	0	6	63	1.20
51874694--51874747	27	1.9	29	81	7	67	57	0	0	42	0.98
51889091--51889305	51	4.2	51	91	1	324	27	24	15	31	1.96
51892662--51892701	19	2.1	19	95	0	71	42	17	22	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51897532--51897668	30	4.6	30	72	7	98	40	17	13	27	1.88
51906097--51906129	11	2.8	12	81	9	50	54	15	15	15	1.71
51910953--51911078	41	3.1	41	86	1	155	40	19	16	23	1.91
51911285--51911336	23	2.2	24	89	3	79	13	28	7	50	1.69
51914506--51914537	9	3.6	9	91	0	55	43	21	3	31	1.68
51914470--51914544	34	2.2	34	81	9	82	48	17	1	33	1.56
51914486--51914578	27	3.5	27	72	16	95	48	13	1	36	1.50
51919798--51919928	43	3.0	43	87	0	181	23	16	29	30	1.96
51920606--51920638	2	16.5	2	93	0	57	48	0	0	51	1.00
51943078--51943139	31	2.0	31	90	6	99	24	4	17	53	1.63
51943290--51943315	7	3.7	7	100	0	52	46	0	0	53	1.00
51948239--51948280	15	2.6	17	85	11	61	61	2	2	33	1.21
51950580--51950679	36	2.7	38	77	7	100	45	0	0	55	0.99
51950618--51950642	9	2.8	9	100	0	50	40	0	0	60	0.97
51950624--51950656	15	2.1	17	88	11	52	39	0	0	60	0.97
51953947--51953976	10	3.0	10	95	0	51	33	0	20	46	1.51
51960429--51960508	41	2.0	41	94	0	142	28	7	23	40	1.82
51962843--51962945	33	3.1	33	92	0	161	43	32	7	16	1.76
51966043--51966154	41	2.7	42	79	6	120	26	17	25	29	1.98
51968197--51968238	21	2.0	22	85	4	59	33	4	23	38	1.76
51976388--51976421	11	3.0	11	95	4	59	17	35	0	47	1.48
51976403--51976523	51	2.4	51	91	2	190	30	25	0	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51979431--51979495	32	2.1	32	97	2	123	47	12	9	30	1.72
51985005--51985036	13	2.5	13	89	0	55	0	12	15	71	1.14
51985031--51985065	13	2.7	13	86	0	52	5	20	0	74	1.02
51985603--51985667	32	2.1	32	94	2	114	49	10	9	30	1.69
51986815--51986844	5	6.0	5	92	0	51	76	0	3	20	0.92
51989121--51989195	28	2.7	27	78	12	71	44	0	1	54	1.08
51989149--51989209	19	3.2	20	76	19	60	39	0	1	59	1.08
51989147--51989209	28	2.2	28	86	5	83	41	0	1	57	1.08
51995093--51995139	24	2.0	24	82	0	58	27	4	2	65	1.22
51995232--51995278	24	2.0	24	82	0	58	27	4	2	65	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211