genome.fa.s21.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  132  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41831761--41831789	5	5.8	5	100	0	58	20	0	0	79	0.74
41841539--41841569	16	1.9	16	93	0	53	48	0	9	41	1.36
41841542--41841583	20	2.2	18	87	8	57	50	0	4	45	1.23
41852913--41852954	21	2.0	21	86	4	59	54	2	2	40	1.26
41853778--41853817	16	2.5	16	84	11	55	55	12	0	32	1.38
41853994--41854029	4	8.8	4	93	6	63	47	0	0	52	1.00
41854287--41854354	29	2.3	31	89	5	104	27	5	17	48	1.70
41854304--41854368	29	2.2	29	86	5	87	36	4	15	43	1.67
41862319--41862472	56	2.8	56	86	4	213	42	18	9	29	1.82
41862846--41862882	5	7.4	5	100	0	74	37	0	0	62	0.96
41863294--41863336	21	2.0	22	81	4	52	32	2	11	53	1.50
41863304--41863344	22	1.9	21	90	5	64	34	2	2	60	1.23
41863304--41863349	16	2.9	16	75	18	51	36	2	2	58	1.22
41883786--41883856	31	2.2	32	82	2	81	40	12	15	30	1.85
41887719--41887858	51	2.8	50	88	6	212	30	30	15	24	1.96
41888081--41888111	16	1.9	16	93	0	53	45	9	9	35	1.70
41889783--41889820	19	2.0	19	89	0	58	23	44	18	13	1.85
41890040--41890079	19	2.1	19	86	9	55	32	2	5	60	1.32
41891054--41891085	15	2.1	15	94	0	55	65	6	6	21	1.38
41910004--41910041	17	2.3	16	95	4	67	60	2	31	5	1.33
41913406--41913447	22	1.9	22	95	0	75	14	26	16	42	1.86
41927875--41928050	87	2.0	87	100	0	352	31	21	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41935029--41935110	40	2.0	40	90	0	128	52	12	15	19	1.74
41935297--41935340	20	2.1	21	91	4	72	6	31	0	61	1.22
41937278--41937401	27	4.6	25	78	8	95	49	10	16	24	1.76
41939847--41939887	21	1.9	22	90	5	66	41	4	4	48	1.46
41944705--41944733	8	3.8	8	90	9	51	65	0	0	34	0.93
41948666--41948730	20	3.3	20	69	16	64	38	12	16	32	1.86
41954711--41954736	5	5.2	5	100	0	52	19	80	0	0	0.71
41957420--41957448	13	2.2	13	100	0	58	44	6	20	27	1.77
41958836--41959021	50	3.7	50	86	0	257	33	26	18	20	1.96
41958836--41959020	25	7.4	25	64	5	88	34	26	18	20	1.96
41974335--41974666	166	2.0	166	100	0	664	30	20	27	22	1.98
41978155--41978221	34	2.0	34	82	5	82	47	16	11	23	1.80
41983322--41983362	21	1.9	22	90	5	66	73	14	2	9	1.19
41990979--41991048	24	2.8	25	82	8	81	28	24	17	30	1.97
41992126--41992172	19	2.5	20	86	6	62	34	2	4	59	1.29
42008024--42008049	12	2.2	12	100	0	52	50	15	15	19	1.79
42016647--42016685	3	13.0	3	100	0	78	33	0	0	66	0.92
42021442--42021491	27	1.9	26	88	8	75	34	6	0	60	1.21
42021690--42021729	14	2.9	14	80	0	53	32	7	20	40	1.80
42021713--42021750	20	1.9	20	88	0	58	28	7	13	50	1.69
42029534--42029572	18	2.2	17	86	13	53	46	20	0	33	1.51
42034056--42034177	44	2.8	44	81	2	120	31	23	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42048597--42048771	45	3.9	44	75	8	156	31	19	21	28	1.97
42048600--42048802	44	4.6	43	74	10	158	30	18	21	30	1.97
42049011--42049129	45	2.7	44	82	1	130	27	24	21	26	1.99
42050006--42050030	5	5.0	5	100	0	50	80	0	20	0	0.72
42050836--42050892	22	2.6	20	79	17	60	40	8	3	47	1.52
42051424--42051564	71	2.0	72	94	1	248	28	19	17	34	1.95
42054935--42054974	3	13.7	3	89	5	64	30	0	2	67	1.04
42068412--42068517	54	1.9	55	82	5	133	42	13	1	42	1.54
42069982--42070025	23	1.9	23	90	0	70	36	11	13	38	1.81
42092612--42092664	24	2.1	25	82	6	63	22	3	5	67	1.28
42097205--42097250	22	2.0	23	88	12	69	65	4	10	19	1.41
42099985--42100114	9	14.7	9	80	12	119	33	20	7	38	1.81
42099978--42100114	18	7.7	18	82	6	163	33	19	8	38	1.81
42099978--42100106	44	2.9	45	87	7	192	33	20	7	38	1.81
42099985--42100111	53	2.4	53	90	4	202	33	20	7	38	1.82
42100137--42100274	20	7.3	20	64	17	89	44	16	5	32	1.71
42100194--42100254	17	3.4	17	68	12	50	50	16	3	29	1.61
42100114--42100296	37	4.9	37	94	2	314	46	14	4	33	1.66
42103144--42103168	7	3.6	7	100	0	50	52	16	16	16	1.76
42104264--42104314	25	2.0	25	92	0	84	15	17	21	45	1.86
42104308--42104337	14	2.1	14	100	0	60	26	33	6	33	1.83
42104820--42104869	18	2.6	19	81	6	57	26	16	16	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42111647--42111744	26	3.8	25	78	6	90	38	11	16	33	1.84
42115055--42115092	20	1.9	20	88	0	58	50	2	5	42	1.39
42120107--42120202	49	2.0	49	82	0	120	29	30	15	25	1.96
42120139--42120232	49	1.9	49	82	0	116	29	28	19	22	1.98
42125149--42125325	9	19.1	9	66	16	58	55	1	4	38	1.27
42125201--42125332	18	7.3	17	71	15	88	53	1	3	40	1.28
42131337--42131542	62	3.3	62	62	12	143	29	7	19	44	1.77
42131317--42131564	124	2.0	124	85	3	338	29	7	19	43	1.78
42133805--42134040	43	5.6	41	76	8	199	34	24	16	24	1.95
42133803--42134040	85	2.8	85	87	3	320	34	24	16	24	1.95
42133811--42134037	42	5.4	42	77	11	207	35	24	15	24	1.94
42134017--42134066	26	1.9	26	87	0	73	28	34	20	18	1.95
42137310--42137389	29	2.7	29	75	19	85	32	8	5	53	1.53
42138142--42138385	42	5.8	42	83	5	271	33	22	18	25	1.96
42138142--42138385	41	5.9	41	83	3	274	33	22	18	25	1.96
42138792--42138881	21	4.3	21	85	0	108	5	42	17	34	1.73
42144198--42144534	9	38.8	9	73	14	289	32	1	20	45	1.59
42144198--42144563	88	4.2	88	83	7	399	31	1	20	45	1.61
42144629--42144653	13	1.9	13	100	0	50	48	8	0	44	1.32
42146425--42147136	365	1.9	366	91	1	1167	34	20	15	30	1.93
42147185--42147265	24	3.2	23	74	19	81	45	8	0	45	1.34
42147185--42147268	28	3.2	26	72	12	73	44	8	0	47	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42147828--42147852	12	2.1	12	100	0	50	32	52	0	16	1.44
42147829--42147871	14	3.2	13	84	12	52	37	41	0	20	1.53
42147852--42147926	14	5.1	14	75	10	60	38	32	1	28	1.65
42147975--42148018	21	2.1	21	87	4	63	45	25	0	29	1.54
42148486--42148564	41	1.9	41	81	0	95	34	24	20	21	1.97
42148509--42148982	115	4.1	114	87	2	610	29	22	22	24	1.99
42148882--42149109	73	3.1	73	87	0	332	26	21	24	27	1.99
42148896--42149116	72	3.1	72	85	0	316	28	22	23	26	1.99
42149041--42149354	114	2.8	114	90	0	468	25	26	23	23	2.00
42149590--42149629	13	3.1	13	81	0	53	47	0	2	50	1.14
42150445--42150496	19	2.8	18	74	8	50	63	5	1	28	1.28
42158052--42158107	29	1.9	29	92	0	94	30	25	5	39	1.78
42160601--42160643	21	2.0	21	82	8	52	34	11	2	51	1.51
42161183--42161223	3	13.7	3	100	0	82	34	0	0	65	0.93
42168439--42168483	18	2.5	17	80	13	54	71	6	4	17	1.25
42173020--42173068	20	2.5	20	86	6	73	48	6	6	38	1.53
42173040--42173103	30	2.1	30	94	0	110	57	4	6	31	1.44
42174327--42174358	17	1.9	16	93	6	55	50	0	0	50	1.00
42174349--42174383	9	3.7	9	85	14	52	37	0	2	60	1.12
42174772--42174802	15	2.1	15	94	5	55	54	0	6	38	1.26
42174945--42174986	20	2.1	20	95	0	75	7	26	21	45	1.77
42178419--42178484	28	2.3	28	86	2	87	39	24	15	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42178431--42178486	28	2.0	29	92	3	96	37	23	17	21	1.94
42178630--42178805	70	2.5	70	81	3	194	30	22	26	21	1.99
42182735--42182771	14	2.6	15	83	12	51	29	2	5	62	1.31
42188693--42188725	13	2.4	14	95	5	59	69	0	15	15	1.19
42190018--42190354	128	2.6	128	92	0	541	30	18	25	25	1.98
42190325--42190428	44	2.3	44	83	4	120	31	16	25	26	1.96
42190345--42190443	44	2.2	44	82	3	119	30	18	20	31	1.96
42190475--42190583	44	2.5	44	75	11	116	28	23	24	22	2.00
42194069--42194172	52	2.0	52	98	0	199	29	7	33	28	1.85
42196907--42197027	27	4.5	27	81	6	111	36	20	25	17	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211