genome.fa.s21.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  182  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56298890--56298943	28	2.0	27	82	10	67	20	14	7	57	1.61
56306146--56306265	57	2.1	58	85	4	163	45	5	20	29	1.71
56311242--56311298	16	3.7	15	76	17	53	66	1	3	28	1.18
56311653--56311691	20	2.0	21	85	10	55	46	0	0	53	1.00
56313175--56313203	13	2.2	13	100	0	58	62	0	31	6	1.22
56320273--56320394	54	2.3	54	82	0	145	26	24	27	21	1.99
56320361--56320424	30	2.1	30	91	0	101	23	18	32	25	1.97
56328151--56328202	24	2.2	24	89	0	77	55	9	1	32	1.43
56332113--56332155	7	6.0	7	79	15	52	81	11	4	2	0.93
56332703--56332748	3	15.3	3	78	17	51	32	0	2	65	1.05
56343825--56343938	42	2.7	42	80	0	120	28	16	15	38	1.90
56343859--56343952	42	2.2	42	84	3	127	27	14	14	42	1.86
56344420--56344486	30	2.2	30	97	0	125	20	34	23	20	1.97
56345455--56345573	25	4.8	25	76	10	109	32	20	28	18	1.96
56348799--56348862	33	1.9	33	100	0	128	34	17	12	35	1.87
56354196--56354220	13	1.9	13	100	0	50	40	24	4	32	1.73
56361195--56361229	18	1.9	18	100	0	70	45	5	8	40	1.58
56366822--56367008	96	1.9	96	95	0	338	33	9	22	34	1.87
56369255--56369353	28	3.6	27	78	9	110	31	11	28	29	1.91
56370287--56370403	47	2.5	46	83	5	137	29	13	16	41	1.86
56370287--56370404	23	5.1	23	70	19	93	29	13	16	40	1.86
56372848--56373053	25	8.6	25	73	14	193	45	14	0	40	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56372848--56373053	95	2.2	95	96	0	376	45	14	0	40	1.44
56372936--56373097	70	2.3	70	94	1	281	47	12	0	39	1.42
56372848--56373076	95	2.4	94	89	4	273	47	13	0	38	1.44
56374736--56374782	23	2.0	24	87	4	69	48	12	10	27	1.74
56376615--56376639	7	3.6	7	100	0	50	60	12	0	28	1.32
56376809--56376847	20	2.0	20	85	10	53	53	7	2	35	1.43
56377842--56377908	11	6.0	11	77	19	59	40	1	31	26	1.65
56383130--56383190	31	2.0	31	87	6	88	32	29	14	22	1.94
56387138--56387202	16	4.1	16	91	0	103	40	6	32	21	1.78
56387633--56387673	13	3.2	12	80	12	55	58	0	0	41	0.98
56387437--56387692	121	2.1	123	92	4	430	52	4	0	42	1.26
56389491--56389515	9	2.8	9	100	0	50	24	0	8	68	1.16
56389792--56389988	98	2.0	98	93	0	340	27	9	24	37	1.87
56401392--56401953	45	12.8	45	72	13	280	29	20	22	27	1.98
56401379--56401961	218	2.7	217	92	1	963	29	20	22	27	1.98
56403478--56403525	24	2.0	25	87	4	71	33	6	4	56	1.44
56403893--56403917	9	2.8	9	100	0	50	24	0	8	68	1.16
56404193--56404389	98	2.0	98	91	0	322	27	9	24	38	1.86
56406594--56406665	31	2.3	31	80	4	90	59	0	1	38	1.06
56406628--56406727	11	9.4	11	73	23	72	59	0	4	37	1.17
56406635--56406705	10	7.1	10	72	22	60	61	0	1	36	1.05
56406638--56406670	16	2.0	17	94	5	59	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56406651--56406716	33	2.0	33	97	2	125	63	0	3	33	1.10
56408323--56408351	15	1.9	15	100	0	58	37	6	0	55	1.27
56425024--56425048	13	1.9	13	100	0	50	0	12	0	88	0.53
56432992--56433029	20	1.9	20	84	10	51	36	0	2	60	1.11
56433694--56433871	88	2.0	88	81	4	207	35	18	9	35	1.84
56433982--56434090	21	5.3	21	70	8	64	60	2	2	33	1.25
56434273--56434318	21	2.4	18	82	13	56	21	10	2	65	1.35
56434296--56434397	29	3.6	27	77	16	82	23	2	2	70	1.15
56434275--56434386	20	5.6	20	73	11	79	22	4	3	69	1.22
56434296--56434386	10	9.2	10	74	10	80	21	3	3	71	1.15
56434275--56434386	39	2.8	37	80	11	98	22	4	3	69	1.22
56434316--56434378	19	3.3	18	80	10	63	22	1	4	71	1.13
56434296--56434399	10	10.9	9	72	15	68	24	2	2	70	1.15
56434355--56434414	28	2.1	28	81	6	68	26	1	5	66	1.21
56435679--56435766	45	2.0	45	86	4	124	52	2	5	39	1.38
56441027--56441073	24	2.0	23	95	4	85	40	8	0	51	1.33
56441122--56441173	27	1.9	27	96	0	95	23	28	30	17	1.97
56441213--56441318	4	25.0	4	78	19	69	69	0	30	0	0.88
56441215--56441325	41	2.7	41	82	12	154	69	0	30	0	0.89
56441239--56441348	31	3.2	31	74	22	112	71	0	28	0	0.86
56446704--56446748	18	2.5	18	85	0	63	17	46	6	28	1.73
56447725--56447755	10	2.9	11	90	9	55	0	29	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56447839--56447938	27	3.7	27	90	2	139	13	29	28	30	1.94
56447998--56448042	22	2.0	22	95	0	81	53	0	8	37	1.32
56448496--56448557	32	1.9	32	83	0	79	64	3	1	30	1.19
56448552--56448613	30	2.1	30	90	3	99	69	0	1	29	0.98
56448514--56448594	40	2.0	43	90	7	132	64	0	2	33	1.07
56448515--56448619	37	2.7	38	82	10	124	67	0	1	30	1.01
56450995--56451065	31	2.3	32	83	7	85	35	7	5	52	1.52
56453926--56454064	25	5.6	25	63	17	67	19	23	22	35	1.96
56454060--56454121	24	2.6	24	77	10	72	17	25	20	35	1.95
56462745--56462841	33	2.8	35	72	20	89	45	3	1	50	1.24
56463161--56463191	16	1.9	16	93	0	53	64	6	0	29	1.18
56470857--56470904	19	2.5	20	76	10	55	54	4	10	31	1.53
56490495--56490627	42	3.2	42	79	10	130	42	17	23	17	1.89
56490546--56490612	21	3.2	22	70	8	59	44	16	22	16	1.86
56490555--56490619	21	3.1	21	70	12	62	46	15	21	16	1.84
56494759--56495019	40	6.5	40	95	0	459	29	22	18	29	1.98
56496576--56496600	13	1.9	13	100	0	50	40	8	4	48	1.51
56499727--56499762	17	2.1	18	89	5	56	41	2	2	52	1.30
56499950--56500006	27	2.1	27	86	0	78	36	7	12	43	1.69
56504332--56504448	62	1.9	59	84	5	153	51	5	3	39	1.43
56517386--56517435	22	2.2	23	82	3	57	64	6	2	28	1.28
56525939--56526132	100	1.9	99	85	1	262	37	15	11	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56527592--56527625	15	2.3	15	94	0	59	64	11	0	23	1.26
56528243--56528292	3	16.7	3	100	0	100	68	0	0	32	0.90
56530814--56530866	25	2.1	26	89	3	81	41	0	0	58	0.98
56548394--56548437	21	2.1	21	83	8	54	27	6	2	63	1.31
56559529--56559580	16	3.0	16	76	23	52	46	0	28	25	1.53
56559527--56559616	35	2.7	33	83	10	103	46	0	30	23	1.52
56565661--56565711	10	5.1	10	81	9	50	25	1	0	72	0.95
56574272--56574300	14	2.1	14	100	0	58	37	27	13	20	1.91
56576496--56576683	45	4.2	44	74	12	145	30	28	17	23	1.97
56578845--56578885	3	13.7	3	85	10	57	34	0	2	63	1.08
56579951--56580013	23	2.7	24	90	4	94	22	20	17	39	1.92
56587035--56587175	41	3.4	41	92	0	219	22	24	20	31	1.98
56593099--56593125	14	1.9	14	100	0	54	29	14	7	48	1.71
56596148--56596256	41	2.7	41	92	0	182	22	28	20	28	1.99
56596896--56596959	25	2.6	25	100	0	128	42	10	6	40	1.65
56597965--56597990	13	2.0	13	100	0	52	38	23	7	30	1.83
56599600--56599727	60	2.2	58	84	2	166	28	16	13	41	1.86
56606253--56606350	36	2.5	41	73	20	100	21	20	22	35	1.96
56606274--56606347	36	2.1	36	89	5	114	17	22	24	35	1.95
56606330--56606464	69	2.0	69	95	0	243	28	17	22	31	1.97
56606339--56606447	35	3.1	34	63	7	85	27	18	23	30	1.98
56608599--56608636	20	1.9	19	89	5	58	42	2	2	52	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56612565--56612629	3	21.0	3	72	12	51	61	1	7	29	1.33
56613434--56613474	2	20.0	2	90	5	64	46	0	2	51	1.14
56614188--56614303	44	2.6	44	80	2	135	28	23	18	30	1.97
56614531--56614824	44	6.5	44	74	8	205	31	18	15	33	1.93
56614696--56614963	44	5.9	45	73	8	211	29	19	16	33	1.94
56614548--56614963	140	3.0	140	88	1	584	30	18	16	34	1.93
56626405--56626478	24	3.1	24	73	21	66	70	1	5	22	1.16
56626411--56626449	12	3.2	12	96	0	69	76	0	5	17	0.96
56631358--56631393	15	2.4	15	85	0	54	52	2	13	30	1.55
56632868--56632905	20	1.9	20	89	10	60	50	5	2	42	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211