genome.fa.s21.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  120  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37878020--37878140	63	1.9	63	91	0	197	30	29	17	22	1.96
37878133--37878164	16	2.0	16	100	0	64	25	25	31	18	1.98
37878070--37878222	79	1.9	79	88	2	227	29	29	21	19	1.98
37878149--37878332	63	2.9	63	82	0	233	34	27	17	20	1.95
37878341--37878372	12	2.7	12	95	0	55	21	37	18	21	1.94
37882714--37882766	26	2.0	26	92	0	88	20	22	30	26	1.98
37882745--37882968	42	5.3	41	74	11	161	24	17	23	34	1.96
37882740--37882977	85	2.8	84	85	1	289	24	18	23	33	1.97
37898506--37898581	40	1.9	40	86	0	107	25	11	31	31	1.91
37902311--37902359	3	16.3	3	86	0	71	30	2	4	63	1.24
37902733--37902791	29	2.0	30	83	6	77	27	6	1	64	1.28
37903116--37903149	18	1.9	17	88	5	50	17	5	14	61	1.52
37905016--37905062	19	2.5	19	86	6	60	27	19	8	44	1.79
37911933--37912614	50	13.6	50	77	1	623	33	22	17	26	1.96
37911933--37912622	100	6.9	99	83	2	711	33	22	17	26	1.96
37914079--37914139	3	20.3	3	86	0	86	32	4	1	60	1.28
37914156--37914206	23	2.2	23	89	0	75	41	23	9	25	1.85
37917276--37917309	18	1.9	17	88	5	50	17	5	14	61	1.52
37927750--37927794	21	2.1	22	87	4	65	26	2	6	64	1.30
37927771--37927803	16	2.0	17	88	5	50	18	6	3	72	1.18
37928261--37928310	11	4.6	11	80	9	50	78	0	20	2	0.86
37928264--37928312	13	3.7	13	78	13	55	79	0	18	2	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37928269--37928312	14	3.2	14	78	15	56	81	0	15	2	0.78
37928264--37928310	22	2.1	23	84	11	62	78	0	19	2	0.85
37928261--37928312	27	2.0	25	88	7	77	78	0	19	1	0.84
37936842--37936881	21	1.9	21	89	0	62	37	15	22	25	1.93
37942487--37942527	20	2.0	20	85	0	55	53	4	4	36	1.44
37949008--37949068	25	2.6	23	80	17	63	44	0	32	22	1.54
37950412--37950444	2	16.5	2	100	0	66	0	48	0	51	1.00
37951539--37951589	17	2.9	17	75	16	59	72	1	7	17	1.18
37955284--37955352	23	3.1	22	87	12	97	27	14	11	46	1.79
37959769--37959819	26	2.0	26	96	0	93	11	23	35	29	1.90
37959870--37959921	26	2.0	26	96	0	95	13	23	34	28	1.92
37959691--37959953	102	2.6	103	90	3	424	18	19	30	30	1.96
37967119--37967169	26	2.0	26	96	0	93	11	23	35	29	1.90
37967042--37967304	102	2.6	103	92	4	426	19	20	30	30	1.97
37970438--37970463	6	4.3	6	100	0	52	46	0	34	19	1.50
37971451--37971535	27	3.2	26	73	9	73	37	30	7	24	1.82
37971457--37971606	54	2.8	53	81	7	169	30	29	13	26	1.94
37971461--37971608	27	5.5	27	76	3	136	30	29	13	26	1.94
37981062--37981181	35	3.2	35	71	22	107	30	23	15	30	1.95
37993946--37993991	17	2.8	16	83	16	58	69	0	2	28	1.00
37993944--37993994	26	2.0	26	84	0	66	72	0	1	25	0.95
38007575--38007624	19	2.6	19	81	6	66	38	28	4	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38019555--38019601	23	2.0	24	83	4	60	55	2	2	40	1.24
38023493--38023523	9	3.4	9	90	0	53	25	12	22	38	1.90
38023575--38023611	9	4.1	9	92	0	65	45	13	10	29	1.77
38024740--38024809	25	2.8	25	86	4	97	25	21	28	24	1.99
38027316--38027356	19	2.2	19	95	0	73	31	0	17	51	1.46
38027323--38027804	241	2.0	245	95	1	873	46	9	4	40	1.56
38027763--38027819	27	2.1	27	86	0	78	49	12	1	36	1.51
38027860--38027946	22	3.7	22	82	14	120	32	1	13	52	1.48
38027855--38027954	49	2.0	49	94	0	173	33	1	13	53	1.46
38027936--38028007	8	8.4	8	71	14	54	36	1	15	47	1.54
38028158--38028224	27	2.5	27	95	0	116	16	32	19	31	1.94
38030087--38030147	24	2.5	25	84	7	81	29	34	13	22	1.92
38030189--38030297	32	3.4	32	76	1	110	22	13	26	37	1.91
38030279--38030351	23	3.2	23	80	0	83	34	19	19	27	1.96
38031971--38032013	23	1.9	23	90	4	70	34	2	11	51	1.51
38035542--38035671	43	3.0	42	76	12	129	23	18	26	31	1.97
38041188--38041315	42	3.1	41	76	8	125	33	24	13	28	1.93
38046351--38046455	54	1.9	54	84	3	140	27	24	26	20	1.99
38071372--38071421	21	2.4	21	86	0	64	58	2	0	40	1.10
38071790--38071827	19	2.0	19	100	0	76	36	10	15	36	1.82
38078318--38078362	20	2.3	20	85	11	58	22	6	4	66	1.33
38085268--38085303	2	18.0	2	100	0	72	0	0	50	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38101228--38101274	10	4.6	10	82	12	60	61	2	0	36	1.08
38101232--38101274	22	2.0	21	90	4	68	58	2	0	39	1.11
38103115--38103141	12	2.2	12	100	0	54	51	0	0	48	1.00
38105758--38105833	19	3.7	21	75	8	75	2	30	15	51	1.57
38105758--38105837	40	2.0	40	82	0	97	2	28	16	52	1.56
38105754--38105833	22	3.8	22	75	9	69	2	31	15	51	1.56
38106343--38106376	17	1.9	18	88	5	52	50	8	8	32	1.64
38107809--38107851	13	3.3	13	82	17	54	48	0	2	48	1.14
38108358--38108419	6	10.2	6	77	10	63	35	1	43	19	1.61
38108401--38108495	43	2.3	41	88	3	136	31	3	52	12	1.55
38108592--38109323	30	24.7	30	88	6	1097	52	0	9	36	1.40
38108592--38109323	59	12.4	59	87	8	1062	52	0	9	36	1.40
38108903--38108953	24	2.2	23	93	6	93	43	0	11	45	1.40
38113002--38113054	21	2.5	21	93	0	88	30	39	9	20	1.84
38114543--38114605	29	2.2	29	91	0	99	30	17	23	28	1.97
38122288--38122335	10	4.6	10	85	10	51	62	4	0	33	1.14
38125486--38125581	42	2.3	42	90	0	147	23	21	22	31	1.99
38126766--38126836	21	3.5	20	72	14	56	19	22	8	49	1.75
38128490--38128534	21	2.0	23	87	8	67	42	2	15	40	1.59
38128722--38128761	21	1.9	21	89	0	62	40	17	10	32	1.83
38129933--38129958	12	2.2	12	100	0	52	61	0	7	30	1.24
38133866--38134188	163	2.0	163	99	0	637	32	18	11	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38134535--38134591	28	2.0	28	100	0	114	14	3	35	47	1.61
38138865--38138915	20	2.6	19	82	11	68	9	25	23	41	1.85
38145141--38145220	37	2.2	35	82	4	88	67	2	10	20	1.31
38152098--38152418	27	11.9	26	79	9	281	42	20	17	20	1.90
38152085--38152430	54	6.4	52	82	6	311	41	20	17	20	1.90
38152086--38152430	81	4.3	79	77	4	316	41	20	17	20	1.90
38171854--38171893	21	1.9	21	85	10	55	52	2	0	45	1.14
38183732--38183756	4	6.2	4	100	0	50	28	0	0	72	0.86
38185223--38185462	50	4.7	50	84	3	246	26	21	27	23	1.99
38189154--38190032	439	2.0	439	96	0	1605	28	13	22	35	1.92
38192010--38192257	50	4.8	50	79	5	210	29	20	27	22	1.99
38194903--38194933	16	1.9	16	93	0	53	22	0	9	67	1.19
38199723--38199780	27	2.1	27	100	0	116	50	6	3	39	1.46
38209860--38209884	3	8.3	3	100	0	50	32	0	0	68	0.90
38215124--38215166	13	3.3	13	75	12	52	39	0	2	58	1.11
38223258--38223300	19	2.3	19	84	8	52	65	0	0	34	0.93
38223258--38223300	20	2.2	20	83	8	52	65	0	0	34	0.93
38223357--38223406	24	2.0	24	81	11	57	38	2	0	60	1.09
38223362--38223400	17	2.4	16	80	12	53	35	0	0	64	0.94
38223726--38223757	10	3.1	10	95	4	55	34	37	18	9	1.83
38240229--38240283	21	2.6	21	85	0	74	32	36	7	23	1.82
38252134--38252177	23	1.9	23	90	0	70	43	4	9	43	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38253581--38253658	23	3.5	22	77	5	61	20	20	19	39	1.92
38261792--38261864	34	2.1	35	92	2	121	34	26	23	16	1.95
38264855--38264903	20	2.5	20	86	0	71	53	2	26	18	1.56
38266433--38266508	38	2.0	38	97	0	143	31	26	17	25	1.97
38271069--38271202	68	2.0	68	95	0	241	29	10	18	41	1.84
38275164--38275232	21	3.3	20	76	8	66	49	0	14	36	1.44
38283320--38283358	19	2.0	21	90	10	64	51	0	5	43	1.24
38285378--38285410	6	5.5	6	100	0	66	51	0	0	48	1.00
38290846--38290894	22	2.1	24	85	7	66	34	10	14	40	1.79
38291664--38291703	4	9.5	4	86	8	53	70	0	5	25	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211