genome.fa.s21.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  128  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40547599--40547655	20	2.8	20	76	10	71	31	21	31	15	1.94
40547916--40547945	6	5.0	6	100	0	60	50	0	0	50	1.00
40548772--40548805	18	2.0	16	88	11	50	64	0	0	35	0.94
40555305--40555351	23	2.0	24	84	12	62	31	8	0	59	1.27
40562460--40562511	18	2.6	21	76	20	65	44	5	13	36	1.68
40567847--40567872	13	2.0	13	100	0	52	46	23	7	23	1.78
40585060--40585240	90	2.0	90	100	0	362	27	18	23	30	1.98
40595046--40595143	28	3.3	28	81	13	115	31	23	23	21	1.98
40595244--40595324	26	3.1	25	73	7	81	34	20	20	23	1.97
40595530--40596028	27	18.6	26	83	4	399	19	17	22	41	1.90
40595558--40596019	54	8.6	54	83	4	443	18	16	22	41	1.90
40595558--40596019	81	5.7	80	83	4	480	18	16	22	41	1.90
40603222--40603308	45	2.0	44	83	2	111	49	2	8	40	1.45
40603490--40603527	3	12.3	3	88	5	58	63	2	2	31	1.22
40603798--40604180	41	9.3	41	81	5	368	19	19	29	30	1.97
40604586--40605221	280	2.2	285	85	5	876	29	2	25	42	1.67
40605243--40605277	18	1.9	18	88	0	52	31	0	25	42	1.55
40607047--40607154	21	5.2	21	65	24	52	48	15	1	34	1.56
40607047--40607291	34	8.4	28	67	25	86	46	16	2	34	1.58
40607062--40607305	9	26.7	9	68	22	93	46	16	2	34	1.59
40607130--40607156	12	2.2	12	100	0	54	51	14	0	33	1.43
40607202--40607301	25	3.8	25	70	25	64	48	14	0	38	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40607682--40607735	19	2.9	18	83	10	65	38	1	0	59	1.08
40609414--40609447	16	2.1	16	88	0	50	32	0	5	61	1.20
40609413--40609467	23	2.5	21	75	19	58	29	0	3	67	1.08
40609534--40609742	43	4.9	43	84	0	265	26	17	30	25	1.97
40616242--40616299	30	1.9	30	92	0	98	17	24	29	29	1.97
40616245--40616317	30	2.5	31	82	8	89	17	20	31	30	1.96
40623453--40623510	30	1.9	30	92	0	98	18	27	29	24	1.98
40633250--40633296	21	2.2	22	92	3	78	21	38	19	21	1.94
40652069--40652116	24	2.0	23	84	8	60	50	8	0	41	1.33
40652391--40652449	30	1.9	32	86	6	86	59	0	3	37	1.14
40652922--40652961	13	2.9	14	85	7	55	32	0	2	65	1.06
40658507--40658541	17	2.1	17	89	10	54	42	0	5	51	1.25
40660703--40660739	19	1.9	19	94	0	65	51	0	21	27	1.48
40663291--40663483	50	3.7	50	77	4	170	27	20	27	23	1.99
40670748--40670923	50	3.5	50	74	9	137	29	21	25	24	1.99
40671133--40671171	12	3.2	12	88	0	51	53	5	20	20	1.64
40684168--40684203	15	2.5	14	86	8	54	44	8	0	47	1.33
40684908--40684960	26	2.0	26	100	0	106	58	11	11	18	1.62
40685388--40685424	18	2.1	18	89	0	56	29	0	2	67	1.04
40698331--40698359	13	2.2	13	100	0	58	34	10	6	48	1.64
40699934--40699971	11	3.2	13	78	21	55	63	0	0	36	0.95
40703486--40703534	25	2.0	25	84	7	66	55	0	36	8	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40707328--40707355	14	2.0	14	100	0	56	7	35	14	42	1.73
40708791--40708821	15	2.1	15	100	0	62	41	12	6	38	1.69
40713813--40713859	23	2.0	23	100	0	94	21	4	12	61	1.48
40719480--40719709	29	7.9	28	78	6	185	20	27	14	37	1.92
40719509--40719723	87	2.5	87	78	3	209	20	26	14	38	1.91
40729159--40729205	19	2.5	19	86	6	60	25	19	10	44	1.82
40730440--40730481	10	4.2	10	82	11	50	88	7	0	4	0.64
40730440--40730476	11	3.4	11	92	7	58	91	5	0	2	0.48
40730440--40730500	19	2.9	19	80	11	59	83	6	1	8	0.87
40731334--40731366	9	3.6	9	95	4	57	78	0	12	9	0.95
40732613--40732750	43	3.2	43	70	17	131	25	23	26	24	2.00
40732579--40732780	87	2.3	87	92	2	325	24	22	26	26	2.00
40732753--40734136	46	30.2	46	87	1	1916	25	16	29	28	1.97
40734303--40734644	44	7.8	43	74	11	214	28	19	26	25	1.99
40734127--40734644	218	2.4	218	92	0	840	28	19	26	25	1.99
40734443--40734645	85	2.3	87	80	5	205	28	18	26	26	1.98
40734612--40734799	96	1.9	97	88	2	279	32	20	20	25	1.97
40734710--40735002	44	6.7	45	78	9	304	32	20	19	27	1.97
40734801--40735039	129	1.9	128	91	2	392	30	21	20	27	1.98
40736547--40736614	3	22.0	3	77	5	64	39	1	1	57	1.17
40740380--40740424	19	2.4	19	85	3	56	15	4	6	73	1.21
40742789--40742866	29	2.7	28	84	11	104	25	15	30	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40742819--40743143	171	1.9	174	95	1	593	30	14	24	30	1.95
40751717--40751770	28	1.9	28	88	0	81	25	22	12	38	1.90
40753315--40753611	50	5.8	50	83	3	301	27	23	27	21	1.99
40759473--40759499	2	13.5	2	100	0	54	0	0	48	51	1.00
40764169--40764209	20	2.2	20	87	12	61	24	19	2	53	1.57
40778173--40778253	35	2.3	35	95	0	144	38	13	6	41	1.70
40781047--40781411	87	4.2	87	92	1	572	28	23	24	23	2.00
40781573--40781732	44	3.6	45	76	3	139	26	21	26	25	1.99
40785634--40785675	20	2.1	20	90	0	66	38	2	0	59	1.10
40785794--40785842	25	2.0	25	88	8	73	53	4	12	30	1.57
40786965--40786990	13	2.0	13	100	0	52	61	0	0	38	0.96
40786948--40787034	44	2.0	45	86	2	122	56	2	5	35	1.36
40787370--40787419	22	2.5	19	81	15	57	38	8	4	50	1.51
40787406--40787431	12	2.2	12	100	0	52	42	0	0	57	0.98
40788958--40789002	6	7.5	6	97	0	63	40	35	8	15	1.79
40794464--40794513	25	1.9	27	84	15	70	48	8	0	44	1.32
40794600--40794640	13	2.9	14	77	22	50	53	0	0	46	1.00
40794673--40794724	15	3.2	15	73	19	50	55	0	1	42	1.10
40794667--40794739	34	2.2	34	80	7	89	53	0	4	42	1.20
40794727--40794952	109	2.1	109	90	0	353	34	12	10	43	1.76
40799273--40799457	23	8.1	23	80	5	151	43	37	2	15	1.61
40799278--40799457	45	4.0	45	80	9	186	43	37	2	16	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40801531--40801576	16	2.9	16	81	12	67	19	8	13	58	1.60
40802087--40802143	21	2.7	21	80	0	69	17	29	28	24	1.97
40803179--40818093	447	33.6	447	95	1	26208	32	8	17	41	1.81
40818087--40834136	447	35.5	447	84	7	18817	39	18	10	31	1.83
40818087--40822690	893	5.1	894	95	0	7834	40	17	8	32	1.81
40823008--40823059	24	2.2	24	89	0	77	55	9	1	32	1.43
40824978--40825029	24	2.2	24	89	0	77	55	9	1	32	1.43
40825102--40835655	893	11.9	894	95	2	18678	41	17	8	32	1.81
40834126--40835655	443	3.4	445	92	5	2455	41	17	9	31	1.82
40835674--40850646	447	34.0	447	91	5	23676	32	9	17	40	1.81
40847111--40847152	22	1.9	22	85	9	59	35	7	11	45	1.69
40855731--40855774	23	1.9	23	90	0	70	38	22	9	29	1.85
40855732--40855781	23	2.2	23	85	0	64	42	22	10	26	1.84
40860088--40860123	19	1.9	19	88	5	56	16	0	22	61	1.35
40861968--40862025	21	2.8	21	86	0	89	20	17	41	20	1.90
40870099--40870131	17	1.9	17	100	0	66	42	6	27	24	1.78
40872291--40872871	305	1.9	306	98	1	1139	30	14	26	28	1.95
40873967--40873999	17	1.9	17	100	0	66	42	6	27	24	1.78
40881728--40881776	24	2.0	24	100	0	98	38	20	20	20	1.93
40883495--40883552	30	2.0	28	83	6	71	44	12	6	36	1.68
40885135--40885266	43	3.1	43	83	0	147	29	27	17	25	1.97
40890450--40890484	18	2.0	17	88	5	52	45	2	0	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40890644--40890738	45	2.1	44	86	1	127	33	26	6	33	1.82
40890717--40890770	16	3.4	16	89	0	72	33	31	0	35	1.58
40894852--40894891	7	5.7	7	84	0	53	45	35	0	20	1.51
40894943--40894975	15	2.1	16	88	5	50	54	33	0	12	1.37
40895015--40895133	7	16.6	7	73	10	71	49	29	1	19	1.58
40895427--40895650	41	5.4	41	80	3	252	31	27	20	21	1.98
40895418--40895649	82	2.8	81	84	2	284	30	26	20	22	1.98
40895714--40895820	39	2.7	40	82	5	137	21	22	18	37	1.94
40903957--40904000	11	3.9	11	78	3	52	72	2	2	22	1.07
40907055--40907339	96	3.0	96	94	1	493	35	12	18	33	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211