genome.fa.s21.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  103  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32113821--32113896	28	2.6	28	81	8	82	59	1	1	38	1.14
32114104--32114185	36	2.5	30	81	14	92	39	0	1	59	1.05
32114173--32114249	40	1.9	41	82	12	97	38	1	1	58	1.15
32115859--32115948	47	1.9	47	100	0	180	37	27	8	25	1.86
32117999--32118243	125	2.0	123	89	4	377	30	15	22	31	1.95
32121451--32121705	23	9.8	28	70	20	196	27	0	23	49	1.51
32121452--32121518	33	2.0	33	94	0	116	26	0	23	49	1.51
32121471--32121710	51	4.8	48	79	14	229	28	0	22	48	1.54
32121490--32121693	23	8.4	23	80	12	230	27	0	23	48	1.51
32123846--32123879	15	2.3	15	90	5	52	67	5	0	26	1.13
32123978--32124030	27	1.9	28	88	3	81	62	1	0	35	1.06
32124074--32124115	22	1.9	22	90	0	66	33	0	33	33	1.58
32124087--32124145	30	2.0	30	93	0	100	33	0	35	30	1.58
32124065--32124167	52	2.0	51	85	9	138	34	0	33	32	1.58
32124117--32124208	22	4.2	22	83	10	125	40	0	29	30	1.57
32124117--32124208	44	2.1	44	89	4	141	40	0	29	30	1.57
32124796--32124824	7	4.3	7	95	4	51	58	0	0	41	0.98
32129907--32129935	6	4.8	6	100	0	58	0	51	0	48	1.00
32134979--32135372	46	8.6	45	79	14	414	28	22	14	34	1.94
32135068--32135186	36	3.0	36	75	21	130	29	21	13	36	1.91
32135022--32135186	82	2.0	82	95	0	294	29	21	13	35	1.92
32135150--32135366	52	4.2	52	83	8	275	28	22	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32135104--32135372	98	2.7	98	93	0	457	28	21	14	34	1.93
32138071--32138103	16	2.1	16	100	0	66	36	6	36	21	1.78
32138391--32138441	22	2.4	21	78	18	52	56	5	0	37	1.23
32138316--32138607	121	2.4	121	93	2	498	52	4	0	42	1.26
32138457--32138490	17	2.0	17	100	0	68	58	0	0	41	0.98
32144469--32146150	561	3.0	554	87	3	2415	34	16	17	31	1.92
32152034--32152153	9	13.0	9	70	14	59	60	4	1	33	1.25
32152640--32152831	10	19.8	9	67	20	70	34	1	4	59	1.26
32152669--32152805	19	6.9	19	68	15	64	34	0	5	59	1.24
32152825--32152867	21	2.0	20	86	8	59	16	2	4	76	1.05
32152853--32152891	19	2.0	19	85	5	51	25	2	10	61	1.41
32156583--32156679	25	3.9	24	80	12	99	22	21	23	31	1.98
32156580--32156695	50	2.3	50	86	5	171	23	22	23	31	1.99
32156580--32156699	25	4.8	25	74	11	93	24	22	22	30	1.99
32163163--32163220	24	2.4	24	94	0	98	56	0	31	12	1.35
32172890--32172931	4	10.5	4	84	0	57	26	4	23	45	1.73
32178782--32178812	9	3.6	9	91	8	55	35	9	22	32	1.87
32179743--32179789	22	2.1	22	92	0	76	23	34	2	40	1.67
32179743--32179841	52	1.9	52	89	0	153	30	31	2	36	1.69
32180995--32181020	7	3.7	7	100	0	52	26	0	11	61	1.30
32182202--32182288	23	3.5	23	77	17	102	43	27	0	28	1.55
32182194--32182823	29	21.4	29	80	12	671	43	27	0	29	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32182232--32182310	23	3.2	23	65	25	61	41	27	0	30	1.56
32182194--32182823	59	10.7	58	83	11	725	43	27	0	29	1.58
32182518--32182663	30	4.1	39	68	29	114	39	30	0	30	1.57
32182574--32182664	41	2.2	41	90	3	139	40	31	0	27	1.57
32182544--32182687	71	2.0	71	95	2	263	41	29	0	28	1.56
32185071--32185472	123	3.3	123	91	1	644	32	21	15	30	1.94
32185927--32185963	19	1.9	19	94	0	65	43	21	0	35	1.53
32187003--32187057	20	2.8	20	91	5	85	30	36	14	18	1.91
32189643--32189748	48	2.2	47	85	9	135	59	1	24	14	1.45
32191420--32191474	20	2.8	20	94	5	94	30	34	14	20	1.92
32193692--32193716	8	3.1	8	100	0	50	16	0	12	72	1.13
32195318--32195347	15	1.9	16	93	6	53	43	0	6	50	1.28
32195244--32195753	120	4.2	120	95	0	921	42	1	4	51	1.31
32195438--32195467	15	1.9	16	93	6	53	43	0	6	50	1.28
32195558--32195587	15	1.9	16	93	6	53	43	0	6	50	1.28
32195269--32195737	38	11.8	40	64	20	173	42	1	4	51	1.32
32195678--32195707	15	1.9	16	93	6	53	43	0	6	50	1.28
32195974--32196004	16	1.9	16	100	0	62	25	35	0	38	1.56
32196993--32197017	2	12.5	2	100	0	50	48	0	0	52	1.00
32199590--32199636	19	2.5	19	82	6	60	40	4	4	51	1.41
32216600--32216631	15	2.1	15	94	0	55	18	9	6	65	1.42
32218540--32219067	263	2.0	262	98	0	1020	36	16	16	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32230967--32231121	50	3.1	50	76	4	168	21	20	25	32	1.97
32231219--32231455	44	5.2	44	70	16	151	27	21	18	33	1.96
32231171--32231453	142	2.0	141	93	0	485	27	20	17	33	1.95
32248872--32248981	25	4.4	25	70	16	77	24	22	21	30	1.99
32248872--32248981	50	2.2	49	87	4	159	24	22	21	30	1.99
32269508--32269615	57	1.9	57	94	0	189	25	19	19	35	1.95
32269514--32269605	29	3.2	29	67	14	82	26	20	18	34	1.96
32278968--32279027	20	3.1	18	81	13	66	65	3	0	31	1.09
32278968--32279020	21	2.6	21	80	16	67	64	1	0	33	1.05
32278968--32279030	19	3.2	18	78	14	63	63	3	0	33	1.10
32280918--32280963	16	2.6	17	80	19	51	45	0	32	21	1.52
32281208--32281269	30	2.1	30	87	0	88	46	0	33	19	1.50
32281310--32281346	9	4.1	9	92	0	65	29	10	13	45	1.77
32283495--32283563	9	7.4	9	73	16	52	57	0	2	39	1.13
32283494--32283564	10	7.5	10	78	12	69	59	0	2	38	1.12
32283476--32283535	29	2.1	29	81	6	68	63	1	5	30	1.25
32283494--32283604	19	5.7	19	69	14	75	55	0	2	40	1.20
32283583--32283632	19	2.6	19	80	3	55	58	2	4	36	1.29
32283583--32283686	10	10.4	10	66	22	58	56	1	1	39	1.21
32283583--32283684	51	2.0	51	83	7	127	57	1	1	38	1.21
32283921--32283970	20	2.4	21	80	9	59	38	10	0	52	1.35
32289884--32290180	50	5.8	50	78	6	222	23	28	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32289954--32290180	100	2.2	103	81	4	262	22	29	21	27	1.99
32294135--32294165	9	3.4	9	90	0	53	25	12	22	38	1.90
32294222--32294264	9	4.8	9	91	0	68	44	16	11	27	1.82
32294219--32294264	18	2.6	18	100	0	92	45	15	10	28	1.79
32294478--32294536	30	2.0	31	90	6	95	20	32	1	45	1.61
32294617--32294677	17	3.4	17	78	15	61	22	27	0	49	1.50
32298092--32298161	27	2.6	27	90	4	106	30	30	11	28	1.92
32298217--32298316	28	3.6	28	79	2	103	25	28	13	34	1.93
32310136--32310217	25	3.3	25	78	0	101	39	24	12	24	1.89
32322314--32322348	3	11.7	3	100	0	70	31	0	34	34	1.58
32344635--32344675	10	3.9	11	81	9	50	58	14	0	26	1.37
32350645--32350684	17	2.3	18	95	4	73	32	22	12	32	1.91
32354623--32354690	21	3.2	21	67	8	57	47	19	19	14	1.83
32354587--32354691	42	2.5	42	85	0	138	42	19	22	15	1.88
32359143--32359168	6	4.3	6	100	0	52	15	0	0	84	0.62
32368295--32368360	6	11.3	6	71	12	57	78	3	15	3	0.99
32368296--32368351	24	2.4	24	85	8	71	80	3	12	3	0.97
32368302--32368330	13	2.1	14	93	6	51	82	6	10	0	0.83
32368296--32368360	11	5.6	11	75	10	58	80	3	13	3	0.96
32376864--32376932	31	2.1	33	86	7	97	60	1	1	36	1.14
32376862--32376901	21	1.9	21	84	0	53	60	0	2	37	1.11
32376897--32376934	19	2.0	19	85	10	51	57	2	0	39	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32377189--32377242	28	2.0	27	88	3	81	59	3	5	31	1.38
32381168--32381228	24	2.5	25	76	10	63	65	4	4	24	1.32
32391116--32391169	28	2.0	28	82	10	67	62	5	9	22	1.45
32398992--32399110	37	3.0	40	73	9	118	26	16	22	33	1.96
32398995--32399126	40	3.3	40	73	7	117	25	18	24	31	1.97
32399238--32399277	19	2.1	19	86	9	55	37	0	30	32	1.58
32402751--32402792	17	2.5	17	81	18	52	42	2	0	54	1.13
32425713--32425964	86	2.9	85	77	6	249	33	26	14	25	1.94
32425711--32425964	43	5.9	43	76	4	226	33	26	14	25	1.95
32425698--32425971	129	2.1	128	78	6	286	32	26	16	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211