genome.fa.s21.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  129  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40908879--40908903	12	2.1	12	100	0	50	16	16	0	68	1.22
40910360--40910812	225	2.0	226	96	1	838	33	15	17	34	1.91
40922653--40922687	12	2.9	12	91	0	52	17	31	31	20	1.95
40927473--40927978	249	2.0	250	99	0	1005	30	15	23	30	1.95
40931614--40931645	16	2.0	16	100	0	64	50	0	37	12	1.41
40940634--40940695	24	2.6	24	90	10	92	16	22	24	37	1.94
40940649--40940711	24	2.6	24	85	7	74	19	25	19	36	1.94
40946655--40946702	24	2.0	24	87	0	69	52	12	4	31	1.58
40948615--40948662	24	2.0	24	87	0	69	52	12	4	31	1.58
40950575--40950622	24	2.0	24	87	0	69	52	12	4	31	1.58
40951723--40951805	20	4.2	20	74	10	80	33	7	14	44	1.73
40951723--40951805	40	2.1	40	86	8	116	33	7	14	44	1.73
40953577--40953638	27	2.3	27	97	0	115	29	22	33	14	1.94
40953795--40953853	22	2.6	22	84	10	75	67	0	1	30	1.00
40954001--40954038	19	2.0	19	89	0	58	50	7	5	36	1.54
40954137--40954208	27	2.7	27	93	0	117	52	12	0	34	1.39
40954248--40954420	22	7.1	24	73	23	157	32	1	13	53	1.47
40954251--40954423	49	3.6	49	84	7	228	31	1	13	53	1.47
40954384--40954436	22	2.4	22	81	6	63	32	0	9	58	1.30
40954466--40954503	19	2.0	19	89	0	58	36	5	7	50	1.54
40954724--40954800	27	2.9	28	90	3	115	19	38	24	16	1.92
40956675--40956717	14	3.1	14	83	6	52	51	4	0	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40962982--40963024	19	2.3	19	88	8	61	20	9	2	67	1.30
40964123--40964326	63	3.2	62	70	13	169	36	13	19	30	1.90
40964040--40964422	130	2.9	130	84	0	496	34	13	19	31	1.91
40964312--40964495	94	2.0	94	84	0	242	33	13	20	32	1.92
40967955--40968017	27	2.4	27	78	5	85	73	0	22	4	1.02
40976360--40976413	28	1.9	28	84	0	72	38	12	18	29	1.88
40976404--40976470	24	2.8	24	83	0	80	31	11	20	35	1.89
40976451--40976517	28	2.4	28	79	0	71	25	13	23	37	1.92
40978835--40979019	51	3.7	50	82	3	192	32	25	15	25	1.96
40982405--40982449	16	2.8	16	96	0	81	37	8	13	40	1.76
40982672--40982867	51	3.9	51	74	8	184	25	16	26	31	1.97
40989621--40989805	51	3.7	50	79	6	176	30	27	16	25	1.96
41000098--41000137	19	2.2	18	86	4	53	47	2	7	42	1.45
41002108--41002261	44	3.6	44	71	8	154	29	20	21	28	1.98
41002067--41002254	85	2.2	85	85	1	243	28	21	20	29	1.98
41002273--41002430	50	3.2	50	76	3	183	26	21	21	30	1.98
41002296--41002489	50	3.9	50	74	1	165	26	23	21	28	1.99
41002273--41002483	100	2.1	100	90	1	325	27	22	20	30	1.98
41002662--41002846	88	2.1	88	87	0	271	27	26	20	25	1.99
41007385--41007410	8	3.2	8	100	0	52	76	0	11	11	1.01
41014800--41014839	19	2.2	18	86	4	53	47	2	7	42	1.45
41014828--41014867	21	2.0	20	90	5	62	67	0	2	30	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41015355--41015384	3	10.0	3	92	0	51	63	0	0	36	0.95
41016714--41016779	19	3.5	19	69	8	53	54	0	1	43	1.09
41016681--41016781	38	2.7	38	84	1	132	53	0	0	45	1.07
41017574--41017604	9	3.4	9	90	0	53	25	12	22	38	1.90
41019257--41019293	9	4.1	9	92	0	65	45	13	10	29	1.77
41019505--41019565	31	2.0	31	83	6	79	18	39	0	42	1.50
41030998--41031083	27	3.2	27	75	6	93	36	10	26	26	1.89
41030994--41031096	54	1.9	54	89	0	161	34	9	27	28	1.88
41030996--41031118	54	2.3	54	85	1	156	35	11	26	26	1.90
41033024--41033072	21	2.5	20	81	15	57	48	0	4	46	1.20
41035647--41035676	11	2.7	11	89	0	51	26	33	20	20	1.97
41049200--41049236	15	2.4	16	82	13	51	24	5	8	62	1.44
41061091--41061645	44	12.8	43	70	12	296	28	18	24	28	1.98
41061093--41061633	89	6.2	87	71	14	285	27	18	24	28	1.98
41061093--41061385	133	2.2	133	92	0	478	28	18	25	27	1.98
41061137--41061600	128	3.6	132	86	6	481	27	18	24	28	1.98
41061315--41061636	128	2.5	128	90	4	490	26	19	24	29	1.98
41063124--41063156	18	1.9	17	88	11	50	30	6	3	60	1.36
41063451--41063487	15	2.4	16	82	13	51	24	5	8	62	1.44
41075821--41075859	20	1.9	21	89	5	62	43	0	12	43	1.42
41085541--41085766	43	5.3	43	78	4	242	31	22	17	28	1.96
41085541--41085767	85	2.7	86	78	3	244	32	22	17	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41085835--41085868	16	2.1	16	88	0	50	55	8	0	35	1.31
41089074--41089117	19	2.3	19	96	0	79	11	29	34	25	1.91
41092928--41092972	23	1.9	23	90	4	72	28	6	6	57	1.50
41093381--41093449	36	2.1	31	81	13	75	40	4	5	49	1.47
41094356--41094627	41	6.7	41	82	3	307	29	27	17	25	1.97
41094356--41094627	82	3.3	82	83	1	341	29	27	17	25	1.97
41094662--41094786	39	3.2	40	79	5	121	24	18	19	37	1.94
41105781--41105884	52	2.0	52	94	0	181	36	13	24	25	1.92
41106168--41106232	30	2.3	27	81	7	76	55	1	1	41	1.18
41116473--41116546	36	2.1	36	86	0	103	36	20	20	22	1.95
41117526--41117570	18	2.5	17	82	10	54	15	13	2	68	1.30
41117531--41117570	18	2.2	18	86	8	55	15	12	2	70	1.28
41125526--41125551	11	2.4	11	100	0	52	80	7	0	11	0.89
41148962--41149022	27	2.3	26	81	13	72	16	19	22	40	1.90
41157168--41157261	22	4.3	22	79	5	109	35	19	29	15	1.93
41157168--41157277	22	5.0	21	78	8	103	35	20	27	16	1.94
41162797--41162845	10	4.8	10	78	11	55	36	0	2	61	1.08
41165087--41165122	18	2.1	18	89	5	56	25	16	16	41	1.89
41173520--41173550	16	1.9	16	93	0	53	9	9	6	74	1.23
41175147--41175224	37	2.1	39	80	9	90	43	3	6	46	1.47
41175282--41175338	16	3.5	17	76	9	57	54	1	1	42	1.21
41194178--41194218	22	2.0	21	85	9	57	17	26	17	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41196026--41196059	16	2.1	16	94	0	59	35	5	14	44	1.70
41198040--41198112	39	1.9	37	86	10	103	42	5	2	49	1.40
41211228--41211265	12	3.2	12	96	0	67	7	10	31	50	1.66
41211309--41211467	41	3.9	41	84	0	203	38	15	27	18	1.91
41211565--41211608	21	2.0	22	91	4	72	20	31	4	43	1.72
41211662--41211747	25	3.4	25	87	3	102	17	41	15	25	1.88
41213811--41213838	8	3.5	8	100	0	56	53	10	0	35	1.36
41213779--41213881	51	2.0	51	92	0	170	48	9	6	34	1.63
41226695--41226878	40	4.6	40	82	6	196	23	20	27	28	1.99
41226695--41226875	80	2.3	81	83	9	221	23	20	27	27	1.99
41226763--41226925	40	4.1	39	82	7	141	26	20	26	26	1.99
41234861--41234887	9	3.0	9	100	0	54	44	22	0	33	1.53
41238735--41238759	12	2.1	12	100	0	50	24	36	24	16	1.94
41238871--41238910	9	4.4	9	90	0	53	47	22	5	25	1.71
41238864--41238910	18	2.6	18	82	0	58	44	21	6	27	1.76
41242095--41242119	13	1.9	13	100	0	50	40	8	28	24	1.83
41250183--41250319	72	2.0	68	86	5	193	50	5	3	40	1.44
41250263--41250338	11	6.8	11	70	24	52	55	2	1	40	1.22
41250231--41250337	19	5.8	18	69	18	60	52	3	2	41	1.34
41250263--41250338	37	2.1	36	85	11	102	55	2	1	40	1.22
41253838--41253864	13	2.1	13	100	0	54	25	29	14	29	1.95
41259894--41259931	10	3.5	11	86	13	53	34	0	2	63	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41267368--41267411	22	2.0	21	83	12	54	40	0	0	59	0.98
41272883--41272918	17	2.1	17	89	0	54	36	36	11	16	1.84
41273397--41273466	25	2.8	25	78	4	79	31	21	20	27	1.98
41276670--41276746	14	5.0	15	71	20	52	42	14	9	33	1.77
41276686--41276725	20	2.0	20	90	0	62	50	12	10	27	1.72
41276674--41276740	34	1.9	35	90	3	109	46	13	8	31	1.74
41277179--41277205	12	2.2	12	100	0	54	44	14	7	33	1.73
41277476--41277581	44	2.4	44	93	1	176	43	29	6	20	1.77
41277852--41277895	14	3.1	14	83	0	61	18	9	52	20	1.72
41278172--41278204	14	2.4	14	94	0	57	15	9	60	15	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211