genome.fa.s21.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  111  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34997589--34997628	18	2.2	18	86	0	53	52	2	2	42	1.28
34997574--34997630	21	2.9	20	78	16	57	54	1	1	42	1.21
34998091--34998164	30	2.5	30	90	0	112	14	45	28	10	1.79
34999284--34999378	45	2.1	45	81	11	106	22	27	21	29	1.99
34999370--34999862	267	1.8	267	89	0	770	25	25	21	27	1.99
35010812--35010865	18	3.1	18	81	2	56	51	3	3	40	1.37
35014968--35015007	20	2.0	20	90	0	62	35	10	10	45	1.71
35019250--35019571	27	12.1	27	78	7	241	40	18	16	24	1.90
35019499--35019602	26	4.0	25	82	7	91	37	18	16	27	1.92
35020822--35020910	45	2.0	45	90	0	142	24	26	12	35	1.91
35028947--35028999	26	2.1	24	86	6	70	77	1	1	18	0.96
35028926--35028998	34	2.1	35	82	7	87	78	2	1	17	0.95
35028924--35029000	14	5.5	14	70	9	59	76	2	1	19	0.97
35030449--35030507	28	2.1	29	87	3	84	35	5	11	47	1.62
35031226--35031282	22	2.6	22	88	0	78	31	47	3	17	1.65
35037498--35037621	50	2.5	50	85	0	167	29	25	27	18	1.98
35038013--35038046	14	2.3	15	90	5	52	11	17	5	64	1.45
35043777--35043840	29	2.3	27	82	12	69	39	9	25	26	1.86
35058017--35058098	29	2.8	30	89	7	116	40	9	26	23	1.85
35061829--35062007	50	3.5	50	81	4	178	27	22	27	22	1.99
35062270--35062308	12	3.2	12	85	0	51	51	5	23	20	1.67
35062796--35063174	181	2.1	179	95	1	679	33	7	16	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35062853--35063225	179	2.1	180	84	4	484	34	8	15	41	1.77
35069640--35069756	50	2.3	50	79	0	144	26	23	28	21	1.99
35070026--35070076	12	4.2	12	75	7	50	49	5	25	19	1.71
35078255--35078279	3	8.3	3	100	0	50	32	32	0	36	1.58
35084319--35084547	50	4.6	50	83	1	264	27	22	28	20	1.99
35091681--35091910	50	4.6	50	87	2	327	26	22	30	21	1.99
35105262--35105322	28	2.1	28	85	8	79	9	13	3	73	1.20
35111789--35111910	62	2.0	62	100	0	244	37	21	6	34	1.79
35113659--35113697	20	2.0	20	90	10	62	35	23	30	10	1.88
35115087--35115238	27	5.6	27	93	3	241	30	28	13	26	1.94
35115087--35115238	55	2.8	55	94	0	259	30	28	13	26	1.94
35123786--35123828	17	2.4	17	88	7	59	65	2	2	30	1.18
35129134--35129163	15	2.0	15	93	0	51	30	33	0	36	1.58
35142366--35142434	29	2.3	30	92	5	122	39	4	17	39	1.69
35155100--35155362	128	2.1	128	95	0	481	24	12	16	46	1.82
35157723--35157795	37	2.0	37	94	0	128	32	12	20	34	1.90
35162987--35163100	36	3.1	38	79	12	105	20	7	4	68	1.31
35163000--35163098	12	8.2	12	73	12	69	20	6	5	68	1.30
35163047--35163098	25	2.1	25	89	3	79	21	3	5	69	1.26
35165348--35165398	25	2.0	25	84	0	66	37	5	13	43	1.69
35169027--35169212	50	3.7	50	83	3	225	22	27	23	26	1.99
35188345--35188386	23	1.9	23	85	9	61	45	4	9	40	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35188266--35188414	80	1.9	80	91	0	244	40	8	9	41	1.68
35196221--35196308	45	1.9	46	83	2	115	38	15	4	40	1.68
35196425--35196465	20	2.1	20	90	4	66	68	7	2	21	1.26
35196495--35196566	9	8.0	9	80	11	60	61	2	1	34	1.19
35196495--35196566	27	2.7	26	81	16	76	61	2	1	34	1.19
35201746--35201904	59	2.7	59	90	1	259	44	18	5	30	1.73
35203434--35203552	42	2.8	41	81	5	121	32	21	17	27	1.96
35203476--35203556	42	1.9	42	92	0	135	33	25	18	22	1.97
35209660--35209705	23	2.0	23	91	0	74	17	21	17	43	1.88
35223206--35223250	16	2.9	16	87	9	58	51	0	6	42	1.28
35226808--35226834	13	2.1	13	100	0	54	74	14	11	0	1.08
35226785--35226843	13	4.2	14	79	12	50	76	10	11	1	1.10
35227251--35227387	42	3.3	41	88	2	184	21	19	23	35	1.96
35227832--35227878	3	15.7	3	100	0	94	34	31	0	34	1.58
35227998--35228026	3	9.7	3	100	0	58	68	31	0	0	0.89
35228212--35228386	77	2.2	78	95	4	318	40	1	11	47	1.47
35228576--35228632	21	2.8	20	81	2	60	47	3	8	40	1.52
35228852--35228941	43	2.1	43	95	0	162	13	42	16	27	1.86
35239939--35240010	25	2.8	26	81	10	69	38	5	19	36	1.75
35248223--35248291	21	3.3	21	78	8	77	10	13	36	40	1.78
35261437--35261629	50	3.8	50	89	0	287	20	30	23	25	1.99
35262450--35262487	20	1.9	20	100	0	76	36	15	10	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35263474--35263898	26	16.2	26	83	3	390	38	18	18	24	1.92
35277316--35277346	15	2.1	15	100	0	62	35	12	19	32	1.90
35279596--35279620	13	1.9	13	100	0	50	48	0	40	12	1.40
35279644--35279686	22	2.0	21	82	17	52	39	25	16	18	1.91
35279825--35279851	13	2.1	13	100	0	54	25	0	37	37	1.57
35279827--35279864	13	3.0	13	88	3	51	21	0	47	31	1.51
35281530--35281583	27	2.0	27	100	0	108	40	25	14	18	1.89
35287574--35287609	13	2.8	13	86	0	54	27	0	38	33	1.57
35290073--35290318	49	4.9	49	78	8	201	24	28	21	26	1.99
35297275--35297374	49	2.0	49	96	3	184	25	23	20	32	1.98
35297387--35297628	101	2.3	105	84	6	291	21	29	21	27	1.98
35297337--35297628	50	5.7	53	78	11	234	21	28	21	28	1.98
35305572--35305614	6	7.5	6	79	10	54	25	0	37	37	1.56
35305564--35305614	16	3.1	16	91	5	75	25	0	37	37	1.56
35305516--35305609	22	4.4	22	80	12	92	25	1	35	38	1.63
35307913--35307956	18	2.3	20	88	11	74	52	0	0	47	1.00
35308347--35308411	29	2.3	28	75	12	71	44	15	20	20	1.86
35317095--35317184	3	30.0	3	100	0	180	66	0	33	0	0.92
35319674--35319714	17	2.4	18	88	12	68	26	36	21	14	1.93
35325889--35325928	21	1.9	21	85	10	55	62	0	2	35	1.09
35325928--35325962	17	2.0	18	88	5	54	8	20	0	71	1.11
35327574--35327648	29	2.6	28	78	14	82	30	22	16	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35329060--35329118	30	2.0	29	86	3	82	64	18	1	15	1.37
35332545--35332636	43	2.1	43	84	4	123	33	29	14	22	1.93
35334718--35334898	75	2.4	76	85	1	247	32	25	18	23	1.97
35334846--35334996	33	4.5	33	70	22	116	33	29	17	19	1.95
35334798--35335028	102	2.3	102	93	0	381	31	27	19	21	1.98
35336716--35336757	17	2.3	19	88	12	70	50	0	0	50	1.00
35337631--35337677	18	2.5	19	86	6	69	74	0	21	4	0.99
35340956--35341333	43	8.8	43	86	1	472	24	30	18	26	1.98
35340956--35341329	129	2.9	129	88	0	527	24	31	18	25	1.98
35341658--35341830	87	2.0	87	86	2	240	13	29	17	39	1.88
35341745--35341793	21	2.3	21	85	0	62	4	42	16	36	1.67
35341910--35342001	34	2.9	32	73	19	95	34	2	15	47	1.57
35341951--35341975	12	2.1	12	100	0	50	32	0	16	52	1.44
35341951--35342004	28	1.9	28	88	7	83	33	0	16	50	1.46
35342085--35342227	69	2.1	69	89	2	225	44	3	5	46	1.44
35342197--35342249	24	2.2	24	83	6	63	47	0	1	50	1.12
35344903--35344943	14	2.9	14	85	3	55	48	31	2	17	1.60
35344903--35344943	22	1.9	21	90	5	64	48	31	2	17	1.60
35344904--35344950	21	2.2	21	85	7	60	51	34	2	12	1.52
35353887--35353927	19	2.2	19	90	0	64	63	7	4	24	1.40
35356412--35356587	76	2.3	78	85	2	221	39	3	18	38	1.69
35356947--35357157	31	6.6	31	71	13	151	28	9	18	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35356932--35357176	33	7.5	32	73	16	193	29	8	18	43	1.79
35356932--35357157	66	3.5	64	87	4	319	29	8	18	43	1.79
35357732--35357778	23	2.0	23	100	0	94	38	4	14	42	1.66
35359779--35359806	14	2.0	14	100	0	56	42	14	7	35	1.73
35364185--35364347	86	1.9	86	83	2	211	27	17	20	34	1.95
35365147--35365334	93	2.0	93	88	0	277	30	25	9	35	1.87
35367346--35367381	10	3.6	10	88	11	56	69	0	0	30	0.89
35375734--35375768	5	6.6	5	90	9	52	54	0	0	45	0.99
35380572--35380637	32	2.1	32	94	0	114	40	9	22	27	1.84
35381140--35381187	24	2.0	24	100	0	96	37	20	20	20	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211