genome.fa.s21.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  135  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42775917--42775947	16	1.9	16	93	0	53	77	3	3	16	1.03
42778348--42778375	14	2.0	14	100	0	56	57	0	7	35	1.26
42786644--42786736	28	3.2	28	75	6	87	41	22	15	20	1.89
42786880--42786966	30	2.9	30	87	0	120	36	25	18	19	1.94
42791967--42792030	27	2.4	27	89	0	92	43	21	14	20	1.87
42792133--42792174	16	2.6	16	96	0	75	38	30	9	21	1.85
42793608--42793713	28	3.8	28	83	5	135	59	1	14	24	1.45
42793608--42793713	56	1.9	56	86	7	153	59	1	14	24	1.45
42793615--42793748	28	4.7	28	81	5	99	59	2	14	23	1.48
42798764--42798842	31	2.6	30	78	15	90	39	16	11	32	1.84
42803591--42803790	69	2.8	69	83	6	195	26	25	17	31	1.97
42803633--42803793	69	2.3	69	86	2	216	26	24	17	31	1.97
42806032--42806065	17	2.0	18	88	11	54	41	0	8	50	1.34
42811839--42811940	39	2.6	39	85	0	141	43	20	2	33	1.67
42813852--42813899	14	3.6	13	81	18	55	37	0	8	54	1.31
42818029--42818225	29	6.8	29	74	12	152	22	27	13	36	1.91
42818020--42818225	59	3.5	59	77	9	215	22	26	14	36	1.92
42818059--42818243	87	2.1	86	86	6	248	22	29	12	35	1.91
42818058--42818226	58	2.9	60	77	12	208	23	28	12	35	1.91
42819410--42819468	27	2.2	27	84	6	75	20	13	27	38	1.90
42819421--42819554	46	2.9	46	89	2	216	17	18	20	42	1.89
42819449--42819537	19	4.3	19	74	21	81	16	16	22	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42819512--42819627	27	4.3	27	81	2	126	18	16	20	43	1.87
42829346--42829578	50	4.7	51	80	4	244	22	26	22	27	1.99
42832279--42832443	73	2.3	73	88	0	240	32	20	28	19	1.97
42832633--42832669	7	5.3	7	96	0	65	10	2	0	86	0.67
42832800--42832847	17	2.8	17	81	12	62	6	12	2	79	1.01
42832913--42832945	16	2.1	16	94	0	57	12	3	6	78	1.04
42835753--42835798	21	2.2	21	92	0	74	23	2	0	73	0.94
42845153--42845260	15	7.2	15	63	12	60	46	7	20	25	1.77
42845149--42845260	30	3.7	30	92	0	188	47	7	20	25	1.75
42849845--42849952	15	7.2	15	67	12	78	44	7	22	25	1.79
42849839--42849962	30	4.1	30	93	1	203	43	6	24	25	1.78
42850545--42850588	18	2.5	18	81	3	54	54	2	2	40	1.25
42850597--42850653	28	2.0	28	100	0	114	47	3	3	45	1.37
42850604--42850654	14	3.6	14	73	19	52	47	1	3	47	1.32
42850597--42850660	28	2.5	25	85	10	76	46	3	3	46	1.34
42850855--42850905	14	3.6	14	73	19	52	47	3	1	47	1.32
42850856--42850912	28	2.0	28	100	0	114	45	3	3	47	1.37
42860495--42860535	3	13.7	3	100	0	82	34	0	0	65	0.93
42869769--42869841	34	2.1	35	89	2	112	41	12	17	28	1.86
42870105--42870191	42	2.0	43	86	2	122	32	22	13	31	1.93
42874205--42874246	22	1.9	22	85	0	57	28	14	19	38	1.90
42874282--42874346	18	3.6	18	82	0	94	13	43	3	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42877381--42877447	34	1.9	35	93	3	118	49	11	5	32	1.64
42877584--42877625	21	2.0	21	86	9	59	52	0	0	47	1.00
42878184--42878317	68	2.0	68	100	0	268	32	20	15	31	1.94
42882546--42882586	4	10.2	4	100	0	82	24	0	24	51	1.49
42884056--42884128	37	2.0	37	81	10	87	50	4	4	41	1.40
42885311--42885341	15	2.1	15	93	0	53	74	9	6	9	1.23
42885928--42885952	12	2.1	12	100	0	50	56	0	36	8	1.29
42906337--42906390	28	1.9	28	92	0	90	37	29	11	22	1.89
42921764--42921830	9	7.4	9	88	6	82	25	5	22	46	1.74
42921859--42921933	30	2.5	30	100	0	150	26	8	18	46	1.77
42923518--42923554	15	2.5	15	87	12	51	51	5	0	43	1.24
42923557--42923590	6	5.7	6	92	0	59	52	26	0	20	1.46
42929464--42929514	9	5.2	10	77	11	52	21	0	5	72	1.05
42929464--42929515	19	2.8	18	80	16	61	23	0	5	71	1.07
42930472--42930521	18	2.7	19	84	9	59	40	6	0	54	1.25
42940296--42940495	51	3.9	51	82	8	246	30	29	17	24	1.97
42940303--42940487	101	1.8	102	91	3	311	30	28	17	23	1.97
42942853--42942903	21	2.4	21	96	0	93	25	9	21	43	1.83
42943059--42943090	8	4.0	8	100	0	64	75	0	0	25	0.81
42956064--42956111	25	1.9	25	95	0	87	54	20	10	14	1.70
42958312--42958426	50	2.2	52	81	7	128	64	1	4	29	1.23
42960706--42960887	50	3.6	51	93	1	296	23	24	32	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42960706--42960887	101	1.8	101	91	0	301	23	24	32	19	1.98
42964798--42964842	18	2.3	20	88	11	67	35	15	31	17	1.92
42973791--42973819	12	2.3	13	94	5	51	75	6	3	13	1.13
42981968--42982027	32	1.9	31	90	6	95	36	6	8	48	1.60
42982542--42982588	25	1.9	25	87	12	71	29	6	8	55	1.55
42982753--42982783	12	2.6	12	89	0	53	22	0	9	67	1.19
42993883--42993915	16	2.1	16	100	0	66	24	18	30	27	1.98
42993841--42993957	58	2.0	58	91	0	189	22	17	25	34	1.96
42993899--42994310	42	9.9	42	85	1	513	22	17	22	36	1.94
42994622--42994661	16	2.6	16	88	4	55	5	22	0	72	1.04
42995072--42995800	152	4.8	150	86	6	922	40	5	10	44	1.62
42995755--42995813	32	1.9	32	82	6	77	33	5	6	54	1.49
42995831--42995869	20	2.0	20	84	0	51	46	5	7	41	1.55
42996392--42996451	10	5.7	10	75	11	57	21	3	1	73	1.07
42996528--42996569	3	14.0	3	94	0	57	26	0	7	66	1.17
42997864--42997977	43	2.6	43	74	1	120	35	23	11	29	1.90
42998001--42998056	23	2.4	24	79	8	62	53	3	1	41	1.29
43000425--43000467	14	3.3	14	81	12	56	46	11	6	34	1.67
43001550--43001587	14	2.7	15	84	12	53	42	13	0	44	1.43
43002105--43002202	40	2.5	40	84	1	126	28	22	20	28	1.98
43002133--43002431	115	2.6	114	82	8	374	27	21	21	29	1.99
43002362--43002492	40	3.3	40	82	6	158	25	20	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43003964--43004017	22	2.3	24	82	14	69	77	0	9	12	0.98
43008883--43008970	34	2.6	33	83	7	113	26	31	3	38	1.73
43008931--43008970	20	2.0	20	85	5	53	32	35	2	30	1.71
43008973--43009034	25	2.5	25	89	0	88	16	38	17	27	1.91
43009927--43009965	20	2.0	20	85	10	53	43	0	5	51	1.24
43011167--43011771	59	10.3	59	92	2	954	45	5	2	46	1.41
43011298--43011619	20	16.4	20	62	15	71	44	4	3	47	1.39
43011662--43011777	55	2.4	46	74	21	119	46	5	1	46	1.35
43012261--43012292	7	4.6	7	100	0	64	31	12	15	40	1.85
43019706--43019776	27	2.6	27	75	0	79	21	32	33	12	1.91
43020623--43020648	8	3.2	8	100	0	52	73	0	0	26	0.84
43020272--43021333	156	6.8	158	91	3	1556	51	8	10	29	1.65
43020272--43021337	465	2.3	469	88	4	1597	51	8	10	30	1.65
43026612--43026658	23	2.0	23	84	8	60	59	14	2	23	1.46
43026966--43026999	3	11.3	3	93	0	59	0	38	0	61	0.96
43028559--43028591	13	2.5	13	86	13	50	27	0	0	72	0.85
43030720--43030990	43	6.3	43	80	1	276	27	30	15	26	1.96
43030720--43030986	85	3.1	84	77	1	237	27	30	14	26	1.95
43031048--43031077	15	2.0	15	93	0	51	36	6	0	56	1.26
43031306--43031396	43	2.1	43	85	2	121	42	9	10	36	1.73
43036185--43036212	14	2.0	14	100	0	56	50	0	0	50	1.00
43036685--43036715	7	4.4	7	91	0	53	32	48	0	19	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43036686--43036739	21	2.6	21	84	0	63	35	46	0	18	1.50
43036734--43036771	14	2.7	15	84	12	53	39	31	2	26	1.70
43037031--43037125	7	13.4	7	70	10	50	46	32	0	21	1.51
43037083--43037120	15	2.6	15	83	4	51	44	39	0	15	1.47
43037395--43037678	41	7.0	41	83	2	320	31	28	18	21	1.97
43037370--43037678	82	3.8	82	85	3	367	33	28	18	20	1.96
43042518--43042580	32	2.0	32	90	0	99	46	7	1	44	1.42
43050112--43050174	32	2.0	32	87	0	90	44	6	3	46	1.45
43054863--43055421	114	4.9	114	76	8	419	30	18	24	26	1.97
43055527--43055562	18	2.0	18	89	10	56	25	0	5	69	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211