genome.fa.s21.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  11  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3813498--3813528	16	1.9	16	100	0	62	19	0	9	70	1.14
3813747--3813788	16	2.6	16	92	0	66	42	7	2	47	1.43
3820695--3820724	13	2.3	13	94	0	51	50	10	6	33	1.62
3820943--3821019	26	3.0	25	72	12	77	55	1	0	42	1.07
3820985--3821041	17	3.4	17	77	0	60	63	0	1	35	1.05
3836659--3836698	20	2.0	20	85	0	53	50	10	10	30	1.69
3836682--3836721	14	2.9	14	84	0	53	42	17	7	32	1.77
3841778--3842025	126	2.0	126	95	0	442	33	9	5	52	1.57
3847477--3847549	36	2.0	36	100	0	146	38	5	5	50	1.49
3854193--3854232	3	13.3	3	100	0	80	67	0	0	32	0.91
3861328--3861408	30	2.7	31	78	12	80	54	1	1	43	1.16
3862925--3863007	42	2.0	42	97	0	157	37	9	20	32	1.85
3873864--3873952	25	3.1	30	84	12	116	42	6	24	25	1.79
3893668--3893791	42	3.0	42	90	5	198	37	2	0	59	1.10
3893689--3893753	30	2.1	30	86	13	89	35	3	0	61	1.12
3893668--3893796	41	3.2	40	91	3	195	36	2	0	61	1.09
3893678--3893787	11	10.4	11	70	24	67	38	2	0	59	1.12
3893761--3893809	11	4.3	12	75	19	52	40	0	0	59	0.98
3893770--3893809	21	1.9	21	94	0	71	40	0	0	60	0.97
3893729--3893802	32	2.4	30	84	8	96	39	1	0	59	1.06
3893769--3893816	21	2.2	20	82	13	60	35	0	4	60	1.16
3899657--3899693	19	1.9	19	88	0	56	24	0	13	62	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3907006--3907057	10	5.2	10	81	9	52	0	13	57	28	1.36
3907003--3907050	15	3.2	15	90	0	69	0	16	56	27	1.41
3909678--3909717	10	4.0	10	86	0	53	47	10	2	40	1.50
3910051--3910210	78	2.0	79	93	1	277	27	22	28	21	1.99
3910780--3911068	125	2.3	126	87	0	418	34	18	20	26	1.96
3914682--3914724	18	2.4	18	88	0	59	44	9	27	18	1.80
3917196--3917236	22	1.9	21	90	5	64	19	0	4	75	0.98
3920202--3920234	6	5.5	6	100	0	66	0	18	0	81	0.68
3922400--3922429	8	3.8	8	95	0	51	53	16	0	30	1.44
3923087--3923116	15	2.1	14	93	6	51	76	0	0	23	0.78
3923619--3923678	20	2.9	21	78	16	70	26	1	0	71	0.95
3923622--3923677	28	2.0	27	83	10	69	25	1	0	73	0.93
3924484--3924522	19	2.1	19	85	0	51	56	7	7	28	1.55
3927273--3927334	29	2.2	28	82	2	70	27	14	12	45	1.82
3933440--3933489	20	2.4	22	80	12	61	26	16	16	42	1.88
3934591--3934663	26	2.9	27	78	12	82	32	10	1	54	1.44
3934604--3934656	24	2.2	24	86	6	72	33	11	0	54	1.36
3934694--3934718	13	1.9	13	100	0	50	36	0	0	64	0.94
3939364--3939394	15	2.1	14	94	5	53	51	25	0	22	1.48
3945612--3945646	17	2.1	17	89	5	54	65	5	0	28	1.15
3945891--3945929	19	2.1	19	85	9	53	53	0	2	43	1.14
3946618--3946648	15	2.1	15	93	0	53	29	0	9	61	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3949936--3950003	16	4.2	16	94	0	118	26	0	33	39	1.57
3950180--3950220	15	2.6	16	81	14	50	53	2	0	43	1.13
3950183--3950475	120	2.4	121	92	2	484	50	4	2	41	1.37
3950299--3950350	15	3.6	15	80	12	56	53	1	0	44	1.11
3953283--3953312	15	2.0	15	100	0	60	46	20	26	6	1.75
3958831--3959111	111	2.6	108	82	7	349	32	16	16	35	1.91
3959287--3959330	21	2.2	20	84	12	54	59	0	18	22	1.38
3959592--3959645	23	2.3	23	84	9	65	51	3	3	40	1.37
3959685--3959735	6	8.3	6	81	12	50	54	0	5	39	1.24
3960294--3960341	24	2.0	24	88	8	71	68	4	0	27	1.07
3961180--3961212	14	2.4	14	94	0	57	9	18	9	63	1.49
3968015--3968080	3	23.7	3	75	25	65	60	0	0	39	0.97
3968018--3968078	5	12.2	5	86	13	90	60	0	0	39	0.97
3968011--3968078	25	2.7	26	95	2	113	60	0	0	39	0.97
3970636--3970708	29	2.5	29	81	2	83	26	16	13	43	1.85
3971608--3971832	89	2.6	88	86	2	328	38	19	8	33	1.82
3972137--3972192	19	3.0	19	74	12	62	35	1	5	57	1.32
3972212--3972260	19	2.6	19	90	6	73	44	0	0	55	0.99
3972132--3972260	69	1.9	67	83	13	165	39	2	2	55	1.25
3975560--3975588	14	2.1	14	100	0	58	37	0	6	55	1.27
3982786--3982815	12	2.5	12	94	0	51	53	0	0	46	1.00
3983539--3983595	18	3.2	17	79	18	55	28	3	1	66	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3983538--3983595	27	2.1	27	81	12	66	27	3	1	67	1.17
3983601--3983636	19	1.9	19	88	5	56	36	0	8	55	1.30
3988092--3988178	29	3.0	29	69	15	72	57	8	8	26	1.55
3988806--3988848	22	2.0	21	82	13	52	39	9	4	46	1.57
3997042--3997083	19	2.2	19	83	8	50	30	16	4	47	1.67
3999745--3999852	53	2.0	53	100	0	216	27	35	11	25	1.90
4027031--4027071	3	14.3	3	85	10	59	63	2	34	0	1.08
4027031--4027079	17	2.9	17	77	17	57	65	2	32	0	1.04
4027031--4027067	14	2.6	14	91	0	65	62	2	35	0	1.10
4027155--4027347	82	2.3	84	80	10	220	30	0	12	57	1.35
4027218--4027266	21	2.3	22	92	7	91	28	0	12	59	1.34
4027241--4027382	61	2.3	61	100	0	284	29	0	13	57	1.37
4027408--4027527	60	2.0	60	88	3	179	34	0	11	53	1.43
4031060--4031139	27	3.0	27	81	3	90	23	33	22	20	1.97
4032205--4032261	23	2.5	23	72	16	55	29	0	7	63	1.21
4032333--4032447	31	3.9	30	77	10	96	37	8	13	40	1.75
4032571--4032641	29	2.4	29	78	4	79	45	12	7	35	1.70
4044678--4044942	41	6.5	41	89	0	350	18	20	30	29	1.97
4045354--4045383	15	2.1	15	93	6	53	30	0	36	33	1.58
4045603--4045648	21	2.2	21	88	0	65	15	2	47	34	1.57
4048443--4048499	27	2.2	26	84	9	71	28	7	1	63	1.30
4048617--4048666	20	2.5	19	80	6	55	56	2	2	40	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4060941--4061023	31	2.7	30	75	12	78	40	2	14	42	1.59
4063616--4063853	41	5.8	41	86	3	291	22	17	29	30	1.96
4063616--4063853	82	2.9	82	87	1	325	22	17	29	30	1.96
4063616--4063853	123	1.9	124	85	4	329	22	17	29	30	1.96
4068550--4068607	22	2.5	25	78	18	63	32	0	5	62	1.18
4069857--4069921	32	2.0	33	93	3	114	12	3	15	69	1.31
4078893--4078973	43	1.9	42	94	2	144	20	20	9	48	1.78
4078906--4078996	23	4.1	23	72	13	100	20	25	6	47	1.74
4083772--4084084	44	7.1	44	64	12	122	25	25	21	27	2.00
4083172--4084193	132	7.7	132	88	2	1419	27	24	19	28	1.98
4094298--4094346	23	2.1	23	100	0	98	20	30	4	44	1.70
4098107--4098152	23	2.0	23	86	4	65	23	2	8	65	1.32
4098341--4098410	22	3.5	22	66	22	62	50	4	1	44	1.30
4098333--4098408	38	2.0	38	92	0	125	48	5	1	44	1.33
4100520--4100576	26	2.2	26	84	9	71	0	29	3	66	1.08
4100632--4100705	5	15.0	5	97	2	141	59	0	0	40	0.97
4109929--4109989	31	2.0	31	86	0	86	47	4	6	40	1.51
4113525--4113574	22	2.3	22	93	6	84	30	34	0	36	1.58
4115955--4116799	30	27.7	30	84	11	1071	45	26	0	27	1.58
4116040--4116100	29	2.4	24	76	23	70	47	22	0	29	1.52
4116004--4116801	59	13.2	59	85	11	1041	45	27	0	27	1.59
4116349--4116391	23	2.0	20	95	4	59	48	20	0	30	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4116600--4116627	6	4.7	6	100	0	56	35	50	0	14	1.43
4116571--4116656	41	2.1	41	97	0	163	41	33	0	24	1.55
4116570--4116799	36	7.1	36	75	20	190	45	26	0	27	1.57
4116689--4116800	56	2.0	56	96	0	206	48	21	0	29	1.56
4119907--4120316	124	3.2	124	91	4	662	33	20	15	30	1.94
4129934--4130030	28	3.6	28	70	16	96	54	11	1	32	1.43
4129943--4130056	52	2.2	52	95	0	201	55	9	1	33	1.43
4131075--4131107	13	2.5	13	90	0	57	33	6	27	33	1.81
4132627--4132680	19	2.8	19	94	0	99	37	9	16	37	1.81
4132627--4132703	38	1.9	40	87	10	113	36	7	16	38	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211