genome.fa.s21.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  148  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46572751--46572850	31	3.1	30	71	20	76	45	9	1	45	1.42
46572736--46572828	36	2.5	38	84	5	127	47	6	1	45	1.35
46573041--46573072	14	2.3	14	100	0	64	31	46	15	6	1.71
46578161--46578192	14	2.3	14	100	0	64	31	46	15	6	1.71
46582263--46582299	3	12.3	3	94	0	65	64	0	35	0	0.94
46585723--46586168	218	2.0	218	91	1	714	30	18	16	34	1.93
46593276--46593305	15	1.9	16	93	6	53	3	13	0	83	0.77
46598458--46598502	5	9.0	5	85	0	54	40	4	22	33	1.74
46612246--46612297	21	2.5	21	90	0	77	40	7	19	32	1.80
46619001--46619058	3	18.7	3	78	7	62	39	3	0	56	1.16
46619592--46619622	12	2.6	12	94	0	53	70	0	25	3	1.02
46620303--46620392	37	2.4	37	83	7	103	41	3	22	33	1.70
46623196--46623242	24	1.9	25	91	4	78	19	6	23	51	1.70
46623195--46623249	24	2.3	24	81	6	76	23	7	21	47	1.76
46623440--46623629	32	5.9	32	74	9	136	20	20	22	37	1.95
46623490--46623635	64	2.3	64	82	4	161	19	21	23	36	1.95
46623458--46623635	96	1.9	96	84	7	245	19	21	22	36	1.95
46623873--46623926	28	1.9	28	92	0	90	16	24	25	33	1.96
46624549--46625070	273	1.9	272	82	4	646	28	6	12	52	1.63
46625163--46625199	14	2.7	15	84	16	53	45	10	13	29	1.77
46625476--46625514	14	2.8	14	80	0	51	41	10	15	33	1.81
46625867--46625950	33	2.8	29	79	13	105	50	10	14	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46625879--46625945	33	2.0	33	91	0	107	52	10	11	25	1.70
46629930--46629954	12	2.1	12	100	0	50	8	44	0	48	1.32
46631829--46631876	23	2.0	23	84	4	60	54	2	0	43	1.12
46632008--46632046	20	2.0	20	84	0	51	58	2	0	38	1.12
46634427--46634468	19	2.2	20	83	12	52	61	2	2	33	1.21
46634489--46634543	9	5.9	9	87	6	56	60	5	3	30	1.37
46634489--46634571	18	4.4	19	77	14	75	59	4	2	33	1.32
46636417--46636465	19	2.5	20	80	9	57	36	0	6	57	1.24
46636434--46636494	19	3.3	19	80	13	65	29	0	6	63	1.19
46644096--46644140	19	2.4	19	96	3	83	28	13	8	48	1.72
46648374--46648471	48	2.0	48	98	0	187	38	19	10	31	1.85
46649118--46649193	36	2.1	37	82	7	93	51	0	9	39	1.34
46649725--46649791	22	3.0	22	88	2	71	35	14	7	41	1.75
46649739--46649804	22	3.1	22	89	6	102	33	16	9	40	1.80
46649763--46649814	19	2.9	17	81	10	59	32	15	11	40	1.83
46650983--46651095	33	3.4	33	73	7	86	26	25	14	33	1.94
46650970--46651231	101	2.6	100	86	2	339	28	26	14	30	1.95
46652894--46653109	111	1.9	111	90	0	342	33	26	8	31	1.87
46655796--46655853	5	10.8	5	75	14	53	43	3	17	36	1.66
46655801--46655853	22	2.4	22	87	0	70	43	3	16	35	1.67
46659207--46659236	9	3.3	9	95	0	51	23	0	6	70	1.11
46660147--46660229	34	2.4	34	84	4	105	44	15	9	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46662163--46662187	5	5.0	5	100	0	50	0	60	40	0	0.97
46670106--46670130	2	12.5	2	100	0	50	52	0	48	0	1.00
46672566--46672621	21	2.5	21	86	13	69	0	33	0	66	0.92
46672565--46672620	24	2.3	24	78	12	69	0	33	0	66	0.92
46674577--46674817	50	4.8	50	86	2	306	20	29	20	28	1.98
46679213--46679255	16	2.5	17	85	7	52	39	0	2	58	1.11
46679222--46679255	17	1.9	17	88	5	50	44	0	0	55	0.99
46690474--46690498	13	1.9	13	100	0	50	68	0	8	24	1.16
46690335--46691027	348	2.0	345	90	2	1093	56	6	13	23	1.60
46702164--46702212	5	10.0	5	95	4	91	59	0	0	40	0.98
46702241--46702277	18	2.1	18	90	5	58	40	0	24	35	1.55
46708472--46708514	22	2.0	22	82	13	54	48	2	11	37	1.52
46710186--46710239	24	2.3	23	80	3	63	46	1	1	50	1.23
46710226--46710272	20	2.5	19	75	6	51	55	2	2	40	1.24
46714371--46714423	20	2.6	21	85	11	74	64	0	0	35	0.94
46714369--46714453	9	8.8	9	70	13	53	64	0	3	31	1.10
46714471--46714518	22	2.2	22	85	7	62	66	8	2	22	1.29
46715243--46715321	16	4.9	16	75	17	65	72	6	15	6	1.26
46719440--46719477	16	2.3	17	86	4	51	57	5	2	34	1.35
46720672--46720701	5	6.0	5	96	0	51	63	0	0	36	0.95
46720672--46720705	15	2.3	15	85	5	52	67	0	0	32	0.91
46720684--46720800	53	2.2	54	93	3	202	41	10	9	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46721626--46721650	5	5.0	5	100	0	50	60	0	40	0	0.97
46724529--46724572	18	2.4	18	92	0	70	40	40	2	15	1.60
46725667--46725711	6	7.7	6	92	5	65	53	4	0	42	1.21
46725667--46725711	17	2.6	17	89	3	63	53	4	0	42	1.21
46725668--46725721	23	2.3	23	80	0	63	51	3	0	44	1.19
46755049--46755075	3	9.0	3	100	0	54	33	0	0	66	0.92
46755089--46755119	16	2.0	16	93	6	55	35	0	6	58	1.24
46756419--46756488	23	3.1	22	78	10	70	54	0	22	22	1.45
46756424--46756490	17	3.9	17	80	16	68	55	0	23	20	1.44
46759011--46759175	55	3.0	55	90	0	267	26	7	15	50	1.71
46762838--46762898	26	2.3	26	80	5	70	34	22	24	18	1.96
46764874--46765017	48	3.0	48	89	0	225	41	22	11	24	1.87
46771747--46771771	13	1.9	13	100	0	50	40	0	0	60	0.97
46773083--46773199	49	2.4	49	85	0	144	22	16	32	29	1.95
46778936--46778987	26	2.0	26	96	0	95	13	23	34	28	1.92
46778858--46779225	103	3.6	102	94	2	603	19	20	29	30	1.97
46785849--46785899	26	2.0	26	96	0	93	11	23	35	29	1.90
46785771--46786137	103	3.6	103	94	2	614	19	19	30	30	1.97
46786054--46786105	26	2.0	26	96	0	95	13	23	34	28	1.92
46796288--46796323	18	2.0	18	89	10	56	30	25	0	44	1.54
46797558--46797604	14	3.4	14	79	2	51	34	10	0	55	1.35
46806887--46806944	24	2.4	24	82	8	73	46	0	13	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46809748--46809777	15	1.9	15	93	6	51	66	20	6	6	1.38
46809778--46809836	27	2.2	27	87	0	82	30	23	30	15	1.95
46809785--46809841	27	2.1	27	96	0	105	31	24	28	15	1.96
46810847--46810873	7	3.9	7	100	0	54	70	0	0	29	0.88
46811244--46811306	19	3.3	19	68	0	63	46	3	9	41	1.52
46811957--46812014	23	2.3	23	85	11	71	50	1	10	37	1.47
46813817--46813861	20	2.2	20	92	0	72	31	26	11	31	1.91
46816258--46816370	59	1.9	59	81	5	138	52	10	7	29	1.64
46816407--46816798	84	4.6	84	84	6	443	45	11	9	33	1.73
46816726--46816956	79	2.9	77	84	5	291	40	12	16	31	1.85
46826304--46826337	17	1.9	18	88	5	52	70	0	2	26	1.01
46827887--46828227	51	6.7	50	76	6	312	31	27	16	24	1.96
46827881--46828229	101	3.5	100	80	6	346	30	27	16	25	1.97
46827887--46828227	152	2.2	152	91	0	538	31	27	16	24	1.96
46830277--46830323	16	3.1	15	76	8	51	59	4	2	34	1.29
46841566--46841610	23	2.0	23	82	8	56	33	4	11	51	1.58
46842190--46842362	42	4.1	42	88	0	249	30	19	20	29	1.97
46842190--46842370	84	2.2	83	90	3	283	30	18	21	29	1.97
46849013--46849057	23	2.0	23	82	8	56	33	4	11	51	1.58
46849393--46849619	42	5.5	42	88	4	302	29	20	23	26	1.99
46872638--46872684	21	2.3	20	78	10	51	65	2	2	29	1.15
46874314--46874641	44	7.5	43	73	11	231	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46874961--46875289	44	7.4	44	76	5	304	27	23	15	33	1.95
46875027--46875289	89	3.0	89	89	3	363	29	23	14	31	1.95
46875290--46875750	88	5.2	88	90	0	697	24	25	24	25	2.00
46875301--46875703	44	9.2	44	67	6	233	24	24	24	26	2.00
46877076--46877119	21	2.1	20	83	8	52	0	18	4	77	0.94
46877192--46877224	14	2.3	15	89	5	50	24	33	15	27	1.95
46882064--46882110	21	2.3	20	78	10	51	65	2	2	29	1.15
46887196--46887258	3	21.0	3	93	0	108	0	30	0	69	0.88
46888925--46888954	15	2.0	15	100	0	60	46	0	0	53	1.00
46901008--46901036	12	2.3	13	94	5	51	20	6	6	65	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211