genome.fa.s21.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  179  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55562694--55562791	10	10.7	9	83	8	85	84	7	6	2	0.84
55562706--55562808	8	12.8	8	77	15	97	84	8	4	1	0.84
55563284--55563332	21	2.3	22	79	13	57	69	2	18	10	1.27
55564811--55565164	87	4.1	88	64	15	221	26	18	25	29	1.98
55564629--55566119	131	11.3	132	91	2	2180	27	18	24	29	1.98
55564959--55566061	44	25.2	44	63	19	146	27	18	24	29	1.98
55564841--55565820	44	22.4	43	64	16	207	27	18	24	28	1.98
55564811--55565961	88	13.1	88	64	16	266	27	18	24	29	1.98
55564629--55566119	263	5.7	263	89	3	2164	27	18	24	29	1.98
55567526--55567585	3	19.7	3	74	16	52	33	1	3	61	1.22
55567541--55567583	11	4.1	10	83	16	52	30	0	2	67	1.03
55567540--55567585	14	3.4	14	83	16	53	32	0	2	65	1.05
55568976--55569264	111	2.7	107	84	4	355	30	13	21	34	1.92
55570544--55570655	9	12.4	9	87	0	152	41	23	10	25	1.86
55570762--55570805	18	2.4	18	88	0	61	13	2	43	40	1.57
55598174--55598231	29	2.0	30	82	3	73	34	6	10	48	1.64
55598715--55598785	22	3.1	22	77	18	58	18	1	23	56	1.50
55598715--55598761	23	2.0	24	87	4	69	17	2	23	57	1.50
55601486--55601529	9	4.8	9	80	5	52	29	2	45	22	1.65
55606985--55607029	23	2.0	23	86	0	63	80	4	11	4	1.01
55607345--55607377	13	2.5	14	90	9	52	3	0	30	66	1.06
55607541--55607594	28	1.9	28	84	0	72	9	33	20	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55613161--55613197	18	2.1	18	100	0	74	16	24	10	48	1.77
55623916--55624167	97	2.6	96	94	1	434	40	18	1	38	1.62
55631889--55631920	17	1.9	16	93	6	55	25	18	28	28	1.98
55643178--55643274	20	4.8	20	69	5	70	17	31	14	36	1.90
55643182--55643430	40	6.2	39	78	7	214	17	29	16	36	1.92
55643178--55643376	80	2.5	79	86	4	249	18	29	15	36	1.91
55643182--55643416	120	2.0	120	83	6	298	17	28	17	36	1.92
55643368--55643423	20	2.8	20	77	0	67	10	33	21	33	1.88
55648255--55648404	39	3.8	39	90	0	228	31	33	22	13	1.92
55648582--55648621	19	2.1	19	100	0	80	30	15	22	32	1.94
55648877--55649105	29	7.9	29	76	9	148	23	12	24	40	1.88
55648867--55649135	87	3.1	86	76	4	202	23	14	23	39	1.91
55648996--55649152	29	5.4	29	74	6	95	26	13	21	39	1.90
55650533--55650572	14	2.9	14	84	0	53	32	7	17	42	1.77
55650541--55650607	34	1.9	35	84	3	91	32	10	11	44	1.75
55650556--55650595	20	2.0	20	85	0	53	27	12	12	47	1.77
55651950--55652019	27	2.6	27	80	8	79	51	20	2	25	1.61
55654726--55654753	14	2.0	14	100	0	56	35	7	7	50	1.57
55658535--55658561	13	2.1	13	100	0	54	37	0	0	62	0.95
55658549--55658625	30	2.6	29	77	8	73	38	1	5	54	1.31
55658600--55658652	22	2.4	23	71	6	56	49	0	0	50	1.00
55658619--55658655	16	2.2	18	85	9	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55658617--55658658	16	2.6	16	81	7	50	50	0	0	50	1.00
55660714--55660755	9	4.7	9	93	0	75	26	9	16	47	1.77
55662415--55662462	12	4.1	11	78	21	53	22	8	2	66	1.29
55662609--55662706	26	3.6	28	75	13	89	42	7	1	48	1.37
55664754--55664852	48	2.1	48	98	0	189	32	24	15	28	1.95
55666374--55666425	24	2.2	24	82	0	59	50	5	3	40	1.45
55666961--55667539	195	3.0	195	91	1	908	30	21	15	32	1.94
55670874--55670925	24	2.2	24	89	0	77	51	5	3	38	1.44
55671598--55671651	17	3.3	17	73	19	60	38	7	9	44	1.65
55671760--55671840	42	2.0	42	90	7	132	41	2	11	44	1.53
55672661--55672698	19	2.0	19	89	0	58	39	18	5	36	1.73
55692738--55692796	27	2.2	27	87	0	91	20	20	22	37	1.95
55700205--55700285	29	2.7	30	78	3	92	43	13	24	18	1.86
55700264--55700360	30	3.2	30	80	0	104	35	16	23	24	1.95
55706952--55707033	43	1.9	42	82	9	103	23	15	26	34	1.95
55706960--55707073	43	2.7	43	72	13	99	24	17	27	30	1.97
55708735--55708771	17	2.2	17	90	0	56	24	21	8	45	1.78
55709558--55709609	22	2.4	22	80	0	59	44	19	19	17	1.87
55709601--55709710	32	3.5	32	77	1	96	39	21	20	18	1.93
55709751--55709807	27	2.1	27	84	12	73	31	24	24	19	1.98
55709882--55709951	24	2.9	24	82	0	95	44	27	8	20	1.80
55709918--55709974	23	2.4	23	85	2	69	43	21	10	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55710031--55710287	81	3.2	79	83	7	286	21	15	18	45	1.86
55710029--55710308	54	5.2	54	76	9	248	21	15	19	44	1.87
55710029--55710308	27	10.3	27	78	8	203	21	15	19	44	1.87
55720125--55720211	42	2.1	42	84	4	113	27	6	21	43	1.78
55733271--55733458	29	6.4	29	79	12	170	36	12	25	25	1.91
55733271--55733458	58	3.2	58	77	7	209	36	12	25	25	1.91
55733448--55733544	29	3.3	31	78	12	123	39	12	29	18	1.87
55738116--55738150	15	2.4	15	90	4	54	48	0	8	42	1.33
55743069--55743100	14	2.2	15	94	5	57	81	0	0	18	0.70
55746709--55746794	35	2.5	35	84	0	118	29	11	12	46	1.77
55748100--55748290	96	2.0	96	98	0	373	31	21	17	28	1.97
55750784--55750902	60	2.0	58	95	3	211	24	8	21	46	1.78
55764272--55764332	25	2.5	24	82	17	72	39	21	18	21	1.93
55764219--55764336	50	2.4	48	77	8	121	34	20	20	24	1.96
55772625--55772740	57	2.0	57	86	3	162	25	21	36	17	1.95
55781807--55781949	38	4.0	36	82	14	190	35	3	19	41	1.69
55781883--55781943	30	2.0	30	93	0	104	36	3	18	42	1.66
55782684--55782734	27	2.0	27	92	7	88	50	0	5	43	1.26
55790798--55790848	27	2.0	27	92	7	88	50	0	5	43	1.26
55791174--55791225	27	1.9	27	84	7	70	50	5	15	28	1.67
55793925--55793972	23	2.0	24	88	4	71	50	0	2	47	1.12
55794346--55794392	16	2.8	17	81	12	53	29	4	2	63	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55794782--55794826	23	2.0	23	82	8	56	28	11	6	53	1.61
55794985--55795041	29	2.0	28	86	10	80	56	0	12	31	1.36
55794983--55795046	29	2.3	26	78	19	67	57	0	12	29	1.35
55795544--55795577	3	11.3	3	100	0	68	35	0	0	64	0.94
55797048--55797133	45	1.9	45	92	0	145	25	16	30	27	1.97
55798605--55798687	23	3.5	23	68	15	62	48	2	0	49	1.14
55803104--55803139	6	6.0	6	86	0	54	19	0	2	77	0.88
55808706--55808769	5	12.4	5	77	12	51	10	4	6	78	1.08
55808706--55808761	15	3.7	15	80	17	62	10	5	5	78	1.07
55808731--55808774	20	2.1	22	87	8	65	9	9	4	77	1.12
55808706--55808765	31	1.9	32	83	16	81	10	5	6	78	1.08
55808715--55808814	32	2.8	37	72	20	88	9	9	8	74	1.24
55819105--55819137	7	4.7	7	100	0	66	27	42	0	30	1.56
55822734--55823043	96	3.2	94	85	5	406	40	1	18	40	1.58
55827245--55827522	41	6.8	41	86	5	316	21	19	29	30	1.97
55827266--55827562	82	3.6	80	84	6	219	21	19	27	30	1.98
55828534--55828581	14	3.4	14	88	5	71	18	0	43	37	1.51
55829080--55829148	20	3.5	19	70	14	52	47	4	0	47	1.21
55833683--55833881	43	4.6	43	81	6	224	22	18	31	28	1.97
55833674--55833881	86	2.4	85	83	4	249	22	17	31	28	1.97
55833683--55833904	86	2.6	85	82	5	223	24	18	29	27	1.98
55835870--55835909	21	1.9	21	94	0	71	22	12	10	55	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55835992--55836050	31	1.9	31	82	0	73	40	13	8	37	1.75
55839961--55840008	24	2.0	24	95	0	87	52	16	0	31	1.45
55841100--55841179	41	2.0	41	97	0	151	45	23	7	23	1.78
55855994--55856416	40	10.3	40	82	9	457	30	24	20	24	1.99
55855981--55856416	82	5.3	82	87	4	592	31	24	20	23	1.98
55863016--55863111	43	2.2	43	77	3	104	27	32	16	23	1.96
55865690--55865727	20	1.9	20	94	0	67	57	0	5	36	1.21
55865745--55865771	3	9.0	3	100	0	54	66	0	0	33	0.92
55870523--55870595	14	5.4	12	73	20	56	24	2	1	71	1.07
55870527--55870600	17	4.6	17	71	21	54	24	2	1	71	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211