genome.fa.s21.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  51  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15276623--15276720	27	3.5	28	90	2	135	26	13	28	31	1.94
15276651--15276733	27	3.0	27	87	5	96	30	12	25	32	1.92
15278906--15278956	13	3.8	13	81	2	57	64	0	23	11	1.26
15278905--15278956	14	3.8	14	82	5	70	65	0	23	11	1.25
15278915--15278952	7	5.6	7	87	6	60	65	0	18	15	1.27
15280181--15280264	43	2.0	43	97	0	159	28	22	26	22	1.99
15280183--15280276	43	2.2	43	90	0	143	28	23	23	24	1.99
15280402--15280922	43	12.4	40	68	15	248	31	23	21	23	1.98
15280311--15280769	127	3.6	127	91	2	692	32	22	21	23	1.98
15280608--15280993	171	2.3	171	93	0	664	30	22	22	24	1.99
15280959--15281115	50	3.2	49	74	10	151	30	22	20	26	1.98
15280999--15281093	47	2.0	47	81	4	111	33	21	20	25	1.97
15287660--15287774	53	2.2	52	81	10	151	37	26	9	26	1.87
15296774--15296898	5	25.2	5	67	20	50	71	0	5	22	1.12
15296774--15296873	41	2.6	39	81	9	107	70	1	7	22	1.18
15296789--15296885	40	2.4	39	77	17	108	72	0	7	20	1.08
15296850--15296898	13	3.6	13	81	15	55	73	0	4	22	1.00
15300592--15300841	105	2.5	101	80	7	281	32	16	24	27	1.96
15300730--15300806	33	2.3	32	82	6	91	32	18	23	25	1.97
15326157--15326186	12	2.5	12	94	0	51	26	40	23	10	1.86
15348002--15348051	26	1.9	26	100	0	100	32	16	10	42	1.81
15354886--15354921	10	3.7	10	88	7	56	44	0	11	44	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15354865--15354920	15	3.4	16	82	12	60	44	0	8	46	1.34
15355219--15355259	22	1.9	22	85	5	57	43	2	17	36	1.62
15360185--15360263	37	2.1	37	88	4	115	25	30	18	25	1.98
15360382--15360872	47	10.4	47	92	0	793	28	29	8	32	1.87
15360382--15360868	237	2.1	237	92	0	798	28	29	8	33	1.87
15367518--15367604	30	2.9	30	71	6	86	36	18	16	28	1.92
15368664--15368713	26	2.0	26	88	11	77	42	14	0	44	1.44
15379577--15379714	72	2.0	72	87	5	203	39	4	6	49	1.49
15379618--15379675	29	1.9	30	83	13	75	36	5	6	51	1.51
15388694--15388745	24	2.2	24	89	0	77	55	9	1	32	1.43
15390665--15390716	24	2.2	24	89	0	77	55	9	1	32	1.43
15394058--15394094	6	6.2	6	93	0	65	48	32	0	18	1.49
15397172--15397233	28	2.1	30	85	14	85	14	11	3	70	1.27
15406720--15406771	18	2.6	21	71	22	58	21	13	36	28	1.91
15411174--15411211	14	2.7	15	84	15	55	42	10	5	42	1.62
15414685--15414754	36	1.9	36	97	0	131	25	4	12	57	1.54
15424359--15424493	51	2.7	49	80	4	148	26	17	25	31	1.97
15432102--15432133	16	1.9	17	93	6	57	34	0	21	43	1.53
15434157--15434349	50	3.7	50	82	6	217	26	21	27	23	1.99
15445634--15445679	3	15.3	3	100	0	92	67	0	0	32	0.91
15447660--15447688	14	2.0	15	93	6	51	31	0	0	68	0.89
15450144--15450191	17	2.8	17	84	6	62	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15454240--15454265	2	13.0	2	100	0	52	50	0	0	50	1.00
15454672--15454719	20	2.4	20	96	0	87	33	0	27	39	1.57
15456034--15456077	18	2.5	18	81	3	54	59	15	2	22	1.48
15457769--15457813	17	2.6	17	86	13	58	82	2	0	15	0.77
15457769--15457807	9	4.3	9	84	9	53	84	2	0	12	0.72
15464735--15464771	18	2.0	18	89	5	56	81	2	2	13	0.92
15470267--15470293	13	2.1	13	100	0	54	37	0	7	55	1.28
15472074--15472297	40	5.7	40	86	6	296	24	22	27	25	2.00
15472074--15472297	78	2.8	80	84	8	296	24	22	27	25	2.00
15480073--15480296	40	5.7	40	86	6	296	24	22	27	25	2.00
15480073--15480296	78	2.8	80	84	8	296	24	22	27	25	2.00
15487386--15487609	40	5.7	40	86	6	296	24	22	27	25	2.00
15487386--15487609	78	2.8	80	84	8	296	24	22	27	25	2.00
15495365--15495587	40	5.7	40	84	5	260	24	21	27	26	1.99
15495437--15495610	80	2.2	79	83	6	210	26	21	27	25	1.99
15497214--15497261	20	2.4	20	96	0	87	33	0	27	39	1.57
15497463--15497603	74	1.9	74	85	2	194	26	17	21	34	1.96
15502828--15502879	20	2.7	20	90	3	79	36	0	26	36	1.57
15508047--15508138	11	8.9	11	68	23	58	41	3	0	55	1.16
15508030--15508125	40	2.4	39	89	1	138	36	3	0	60	1.13
15508528--15508634	29	3.6	29	69	22	96	37	19	15	27	1.92
15514216--15514428	25	8.6	25	83	4	216	26	23	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15522243--15522268	13	2.0	13	100	0	52	46	23	7	23	1.78
15522649--15522836	29	6.4	30	80	4	145	21	26	14	37	1.92
15529132--15529161	12	2.5	12	94	0	51	6	23	40	30	1.80
15530222--15530360	30	4.7	30	69	7	95	23	25	12	38	1.90
15530418--15530500	29	2.9	29	82	3	98	21	19	13	45	1.84
15533911--15533998	28	3.2	28	83	3	108	35	15	20	28	1.94
15546785--15546914	60	2.2	60	84	0	161	38	19	15	26	1.91
15554797--15554824	13	2.2	13	100	0	56	35	21	0	42	1.53
15557828--15557895	13	5.4	13	75	7	59	32	19	4	44	1.70
15580668--15580700	9	3.7	9	91	0	57	33	12	21	33	1.90
15580935--15580994	30	2.0	31	86	3	86	20	40	0	40	1.52
15581366--15581435	18	3.9	17	71	17	52	38	4	0	57	1.19
15583360--15583411	26	2.0	26	96	0	95	13	23	34	28	1.92
15583283--15583651	103	3.6	104	92	3	611	18	20	30	30	1.97
15583568--15583619	26	2.0	26	96	0	95	13	23	34	28	1.92
15585480--15585525	21	2.2	21	88	0	65	21	8	32	36	1.84
15587704--15587796	43	2.2	43	82	7	109	29	16	23	31	1.96
15599665--15599876	104	2.0	104	93	1	363	18	19	30	31	1.96
15599795--15599946	71	2.1	72	92	1	252	23	17	29	30	1.97
15604141--15604270	19	6.8	19	93	0	224	37	10	16	36	1.82
15604230--15604306	19	3.7	23	80	10	60	37	5	15	41	1.70
15604535--15604579	23	2.0	23	91	4	74	6	20	28	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15604667--15604831	43	3.8	43	90	0	258	26	33	20	20	1.97
15606621--15606704	39	2.1	39	86	4	114	51	5	11	30	1.63
15608928--15608969	21	2.0	22	90	4	68	26	0	42	30	1.55
15609462--15609501	21	1.9	21	84	0	53	47	37	0	15	1.45
15609503--15609542	15	2.8	14	85	7	53	47	27	0	25	1.52
15610655--15610968	41	7.7	41	82	4	296	31	28	19	21	1.97
15610687--15610974	41	7.1	40	83	5	319	30	29	19	20	1.97
15610686--15610975	82	3.6	81	84	4	352	31	29	18	20	1.96
15610655--15610974	163	2.0	163	83	3	412	31	28	19	20	1.97
15611405--15611445	21	2.0	21	85	0	55	36	9	9	43	1.71
15616490--15616522	14	2.3	15	89	5	50	30	12	30	27	1.92
15617852--15618340	175	2.8	176	91	0	755	28	27	23	20	1.99
15617852--15618340	88	5.6	88	90	0	737	28	27	23	20	1.99
15618485--15618588	50	2.1	50	81	0	118	27	24	24	24	2.00
15618782--15619157	44	8.7	44	70	11	224	28	19	23	28	1.98
15618830--15619035	84	2.4	86	78	10	206	28	18	23	28	1.98
15618910--15619270	44	8.2	44	70	14	158	29	19	23	27	1.98
15618766--15619157	217	1.8	217	90	1	633	29	18	23	28	1.98
15619127--15619287	44	3.6	45	80	5	150	31	21	21	26	1.98
15618780--15619252	217	2.2	215	84	4	592	29	19	23	27	1.98
15619797--15619888	19	4.8	19	91	0	157	36	8	15	39	1.78
15619797--15619911	38	2.9	38	90	5	176	36	7	15	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15619797--15619911	19	5.7	22	87	4	92	36	7	15	40	1.77
15619880--15619922	22	1.9	23	85	4	61	34	4	13	46	1.65
15620091--15620140	23	2.2	23	81	0	55	22	0	16	62	1.33
15620365--15620394	13	2.4	13	94	5	53	30	0	0	70	0.88
15626097--15626154	23	2.6	23	79	12	59	46	1	6	44	1.40
15627899--15627989	47	1.9	47	97	0	173	41	19	10	27	1.85
15630079--15630120	17	2.4	17	88	4	57	59	0	2	38	1.10
15639371--15639405	18	1.9	18	88	0	52	37	25	11	25	1.90
15641264--15641327	33	1.9	33	93	6	112	37	6	28	28	1.81
15645626--15645670	21	2.0	22	87	8	65	64	8	15	11	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211