genome.fa.s21.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  170  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52974315--52974589	44	6.3	45	75	13	184	28	22	22	26	1.99
52978033--52978180	42	3.6	41	86	2	188	31	19	22	27	1.98
52978257--52978320	20	3.5	20	68	24	68	64	3	3	29	1.24
52978256--52978322	34	1.9	35	96	3	127	64	2	4	28	1.28
52978528--52978599	21	3.4	21	88	0	99	4	43	16	36	1.68
52980219--52980685	9	52.3	9	70	15	269	37	0	16	45	1.52
52980284--52980448	25	6.4	25	82	9	181	38	0	15	44	1.51
52980223--52980686	34	13.3	34	70	16	222	37	0	16	45	1.52
52980363--52980637	25	10.4	26	75	15	119	36	0	16	46	1.52
52980216--52980547	175	1.9	171	88	6	499	39	0	15	44	1.53
52980467--52980685	25	8.6	25	72	18	125	35	0	17	47	1.52
52980366--52980671	110	2.7	111	87	9	426	35	0	16	46	1.53
52982966--52983017	20	2.6	21	81	6	72	48	34	0	17	1.48
52983025--52983114	35	2.6	36	80	7	87	48	21	1	28	1.57
52983485--52984064	114	5.1	113	84	2	687	27	28	19	25	1.99
52983485--52984060	228	2.5	227	87	2	812	27	27	19	25	1.99
52983957--52984130	73	2.4	73	84	3	219	24	25	24	25	2.00
52990575--52990604	15	1.9	16	93	6	53	6	26	0	66	1.16
52992043--52992137	40	2.4	39	78	5	109	33	23	22	21	1.97
52992213--52992618	41	9.9	41	87	0	524	21	22	25	29	1.99
52996689--52996721	15	2.2	15	94	0	57	12	3	48	36	1.56
52996690--52996726	15	2.4	15	86	4	56	10	2	48	37	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53007814--53007854	20	2.1	20	86	4	57	60	0	4	34	1.18
53008907--53008945	20	2.0	20	85	10	53	46	2	10	41	1.51
53009033--53009073	21	2.0	21	85	0	55	41	9	0	48	1.36
53020031--53020129	46	2.2	46	83	5	130	47	3	6	43	1.43
53029998--53030041	23	1.9	23	95	0	79	34	6	2	56	1.38
53030395--53030438	3	14.7	3	100	0	88	0	0	31	68	0.90
53040767--53040808	13	3.3	13	83	3	50	9	2	40	47	1.49
53040945--53041008	27	2.3	27	73	26	62	0	29	0	70	0.88
53040963--53041083	14	8.1	14	67	23	61	1	28	0	70	0.97
53040965--53041109	31	4.4	31	72	19	98	2	28	0	69	0.99
53040991--53041112	4	30.0	4	69	22	53	2	27	0	69	1.01
53040965--53041085	9	12.0	10	66	17	63	1	27	0	71	0.96
53041001--53041090	29	3.1	29	82	9	96	2	28	0	68	1.01
53045323--53045465	43	3.4	41	76	10	135	36	26	13	23	1.92
53048637--53048668	13	2.3	15	89	10	50	56	0	0	43	0.99
53049370--53049441	7	10.1	7	70	18	51	44	37	1	16	1.57
53049868--53050017	41	3.7	41	82	4	178	32	29	18	20	1.96
53050136--53050214	40	2.0	40	87	5	115	22	17	21	37	1.94
53051184--53051229	20	2.3	20	88	3	67	69	4	0	26	1.07
53052366--53052391	13	2.0	13	100	0	52	30	7	15	46	1.74
53053309--53053347	18	2.2	17	86	13	53	33	0	20	46	1.51
53053573--53053669	23	4.2	23	87	0	149	21	20	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53053573--53053669	46	2.1	46	94	0	167	21	20	25	31	1.98
53057471--53057500	11	2.7	11	100	0	60	33	0	10	56	1.32
53059350--53059978	316	2.0	316	97	0	1179	27	21	20	30	1.98
53061257--53061359	41	2.5	40	84	9	127	29	23	20	27	1.99
53061994--53062153	79	2.0	81	82	6	200	38	15	6	40	1.72
53065523--53065564	16	2.7	16	81	3	59	78	0	16	4	0.91
53065521--53065572	27	2.0	27	88	7	81	75	0	21	3	0.97
53069119--53069160	18	2.2	20	83	8	52	38	0	7	54	1.28
53070603--53070724	61	2.0	61	95	0	217	30	21	10	37	1.87
53078519--53078584	9	7.3	9	72	6	53	28	3	3	65	1.23
53093512--53093550	21	1.9	20	89	5	60	79	0	20	0	0.73
53098068--53098120	27	2.0	27	85	7	72	52	16	3	26	1.61
53102133--53102262	51	2.6	50	85	4	154	23	15	26	33	1.95
53102076--53102259	101	1.8	101	84	3	253	24	16	25	33	1.96
53104573--53104632	4	14.8	4	96	3	111	26	0	25	48	1.52
53110128--53110209	41	2.0	41	97	0	155	50	4	23	21	1.68
53119053--53119085	5	6.6	5	100	0	66	81	18	0	0	0.68
53121598--53121622	13	1.9	13	100	0	50	64	16	0	20	1.30
53122351--53122434	23	3.6	23	71	13	73	45	16	15	22	1.85
53122346--53122528	101	1.8	100	88	3	278	45	15	15	22	1.84
53122447--53122532	23	3.7	23	70	11	75	41	16	17	24	1.89
53122346--53122532	48	3.8	48	82	8	241	45	16	15	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53131754--53131806	26	2.0	26	100	0	106	33	15	15	35	1.88
53138793--53139618	412	2.0	412	100	0	1652	39	16	16	26	1.90
53151877--53152030	80	1.9	78	97	2	290	35	29	5	29	1.79
53171522--53171551	15	2.1	14	93	6	51	40	0	0	60	0.97
53178074--53178159	14	6.1	14	71	6	57	37	3	20	38	1.70
53178995--53179034	14	2.9	14	84	0	53	40	12	7	40	1.71
53178960--53179026	34	1.9	35	87	3	100	46	11	7	34	1.69
53191932--53192022	31	3.0	31	74	4	98	42	13	9	34	1.77
53201535--53201589	27	2.0	27	100	0	110	52	18	3	25	1.61
53202361--53202399	19	2.1	19	95	0	69	58	0	5	35	1.20
53208592--53208668	32	2.4	32	89	4	111	41	10	19	28	1.84
53213635--53213775	59	2.4	59	83	5	169	24	14	14	47	1.80
53213617--53213775	59	2.7	59	79	10	155	22	15	15	46	1.83
53215768--53215815	22	2.2	22	92	0	78	41	14	4	39	1.65
53215774--53215817	22	2.0	22	100	0	88	40	13	4	40	1.65
53226088--53226202	24	4.7	25	72	10	85	30	20	30	18	1.96
53229846--53229880	12	3.0	12	87	4	54	62	0	8	28	1.24
53231046--53231131	43	2.0	43	95	0	154	52	2	22	23	1.59
53231051--53231116	16	4.4	16	68	24	54	54	3	22	19	1.58
53237180--53237220	15	2.8	15	78	17	50	53	0	0	46	1.00
53237311--53237374	31	2.1	31	81	0	74	50	10	14	25	1.75
53243217--53243248	15	2.1	15	100	0	64	56	0	37	6	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53243821--53243850	15	1.9	16	93	6	53	43	0	3	53	1.17
53244009--53244039	16	1.9	16	100	0	62	51	25	3	19	1.62
53252775--53252800	11	2.4	11	100	0	52	38	7	0	53	1.30
53252750--53252867	40	2.8	40	85	6	146	36	1	0	61	1.12
53252824--53252888	32	2.0	32	85	5	87	33	0	4	61	1.16
53256380--53256456	31	2.6	28	70	24	68	57	10	7	24	1.59
53257519--53257565	11	4.1	11	84	10	58	51	0	0	48	1.00
53257519--53257615	24	4.0	24	73	12	90	48	1	0	50	1.07
53266900--53266934	18	1.9	18	94	0	61	25	28	5	40	1.78
53267182--53267222	21	2.0	21	85	0	55	31	48	14	4	1.65
53270472--53270741	127	2.1	125	85	3	362	30	16	15	37	1.90
53270801--53270909	34	3.2	32	76	7	101	44	14	0	40	1.52
53275674--53275729	25	2.2	25	87	0	76	32	19	26	21	1.97
53278518--53278572	14	3.8	15	76	7	51	49	10	0	40	1.38
53278896--53278927	15	2.1	15	94	0	55	15	6	9	68	1.36
53282061--53282120	18	3.3	18	90	0	102	20	1	18	60	1.45
53282060--53282130	18	3.8	19	83	9	92	21	2	18	57	1.52
53285996--53286060	18	3.6	18	91	0	112	23	1	18	56	1.49
53294640--53294677	10	3.7	10	92	3	58	47	0	0	52	1.00
53295452--53295528	29	2.6	29	83	4	91	48	14	12	24	1.79
53297251--53297281	16	1.9	16	93	0	53	48	0	9	41	1.36
53298893--53299034	43	3.4	42	84	1	169	28	15	16	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53299010--53299080	36	2.0	35	86	5	99	29	8	16	45	1.77
53302167--53302242	3	25.3	3	97	0	143	31	0	0	68	0.90
53306743--53306807	14	4.7	14	81	16	73	78	7	1	12	1.02
53306744--53306833	6	14.2	6	77	12	83	77	6	1	14	1.02
53306744--53306833	40	2.4	36	85	9	108	77	6	1	14	1.02
53306743--53306861	36	3.2	36	78	8	105	76	5	5	13	1.12
53309047--53309167	44	2.8	44	88	0	179	28	18	24	28	1.98
53309182--53309860	43	15.3	43	65	9	236	30	22	22	24	1.99
53309156--53309860	87	7.9	88	88	3	966	31	21	22	24	1.99
53309140--53309860	267	2.7	267	90	0	1120	30	21	22	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211