genome.fa.s21.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  199  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61465200--61465264	32	2.1	32	97	2	123	47	12	9	30	1.72
61466351--61466384	15	2.2	16	94	5	61	52	8	0	38	1.33
61467124--61467216	17	5.4	16	74	12	71	47	1	2	49	1.20
61467125--61467218	9	10.9	9	68	16	56	47	1	2	48	1.20
61467307--61467377	21	3.5	20	75	16	76	53	0	1	45	1.09
61467322--61467381	17	3.3	17	80	17	75	55	0	1	43	1.10
61467318--61467373	9	6.0	9	78	15	60	55	0	1	42	1.10
61467307--61467381	38	1.9	39	91	2	125	54	0	1	44	1.08
61467383--61467420	18	2.1	19	85	5	51	39	5	0	55	1.23
61467459--61467701	99	2.5	95	86	6	326	29	17	14	38	1.89
61471451--61471483	4	8.2	4	100	0	66	51	24	0	24	1.48
61479441--61479499	31	1.9	31	89	6	93	35	10	0	54	1.34
61480186--61480229	9	4.7	9	81	10	52	40	4	2	52	1.34
61480191--61480237	20	2.3	20	85	0	67	44	4	2	48	1.34
61485654--61485700	24	1.9	24	83	12	60	34	21	0	44	1.52
61487973--61488026	25	2.2	25	96	0	99	46	12	16	24	1.82
61488314--61488348	17	2.1	17	88	0	52	77	2	0	20	0.90
61488318--61488380	25	2.5	24	76	19	58	73	4	1	20	1.11
61495881--61495926	21	2.1	22	92	4	76	58	4	0	36	1.18
61498184--61498412	116	1.9	119	86	6	333	31	17	10	39	1.84
61505393--61505449	19	3.0	19	85	10	64	36	0	1	61	1.07
61511418--61511471	28	2.0	27	92	3	90	62	5	0	31	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61514210--61514316	56	1.9	56	84	0	142	38	20	16	24	1.93
61529356--61529417	32	1.9	32	83	6	81	33	4	4	56	1.42
61532418--61532458	21	2.0	21	90	0	64	19	29	21	29	1.98
61539630--61539680	21	2.4	21	93	0	84	21	41	13	23	1.89
61540291--61540356	12	5.5	11	83	3	60	36	33	3	27	1.72
61540303--61540356	24	2.2	24	93	0	90	37	33	3	25	1.74
61544572--61544629	31	1.9	30	82	10	73	62	13	5	18	1.50
61546096--61546145	26	1.9	26	83	0	64	44	2	8	46	1.44
61550290--61550322	16	1.9	18	88	11	52	27	0	3	69	1.03
61554769--61555150	190	2.0	190	99	0	755	29	8	21	39	1.84
61574371--61574395	6	4.2	6	100	0	50	84	0	16	0	0.63
61575226--61575267	21	2.0	21	95	0	75	21	19	7	52	1.69
61579588--61579664	29	2.6	29	83	4	91	46	14	14	24	1.81
61589798--61589847	24	2.0	25	92	3	84	40	8	2	50	1.43
61589980--61590151	22	8.0	22	72	24	113	69	0	30	0	0.89
61589991--61590156	18	9.2	18	72	19	116	70	0	29	0	0.88
61590024--61590115	26	3.7	26	76	16	86	70	0	29	0	0.87
61590012--61590129	49	2.4	49	86	6	152	72	0	27	0	0.85
61590020--61590155	69	2.0	70	66	18	63	71	0	28	0	0.86
61590012--61590151	44	3.1	45	84	10	189	72	0	27	0	0.85
61592104--61592174	28	2.4	30	80	19	87	0	28	0	71	0.86
61592136--61592172	18	2.1	18	89	0	56	0	27	0	72	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61592141--61592236	44	2.1	46	90	3	151	0	27	1	71	0.92
61592169--61592260	18	5.4	18	66	27	51	0	31	1	67	0.98
61592161--61592254	28	3.3	28	75	13	84	0	29	1	69	0.96
61592180--61592258	36	2.3	35	82	8	101	0	30	0	69	0.89
61592212--61592270	18	3.1	18	75	17	55	0	35	0	64	0.94
61593282--61593322	21	2.0	21	90	4	66	14	34	24	26	1.94
61593284--61593329	21	2.3	21	85	7	60	17	39	21	21	1.93
61605069--61605135	31	2.2	31	86	2	91	37	14	38	8	1.78
61610776--61610818	21	2.0	21	100	0	86	34	32	18	13	1.90
61611261--61611296	18	2.0	18	94	0	63	0	63	0	36	0.94
61614163--61614195	12	2.8	12	90	4	50	42	33	18	6	1.75
61614838--61614892	21	2.6	21	85	0	74	29	36	9	25	1.87
61624771--61624810	16	2.3	18	83	12	57	45	0	0	55	0.99
61625961--61626139	58	3.1	58	77	8	168	25	12	11	49	1.75
61633357--61633415	30	2.0	28	83	6	73	42	10	6	40	1.65
61634765--61634804	19	2.1	19	90	9	64	80	2	7	10	1.00
61642618--61642664	24	2.0	24	83	8	60	70	6	6	17	1.30
61643034--61643076	23	1.9	22	85	4	59	58	9	0	32	1.30
61643588--61643630	23	1.9	22	90	4	68	44	13	4	37	1.65
61643588--61643664	19	3.8	19	89	6	91	40	15	7	36	1.76
61645377--61645679	105	2.9	105	80	2	340	35	11	21	31	1.89
61654904--61654952	13	3.8	13	88	0	80	38	22	10	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61654904--61654954	26	2.0	26	96	0	93	39	23	9	27	1.86
61661773--61661816	23	2.0	22	81	4	52	27	9	11	52	1.67
61670047--61670101	24	2.3	25	75	9	60	41	21	18	18	1.90
61671729--61671799	29	2.4	29	78	4	70	35	4	7	53	1.48
61671996--61672020	12	2.1	12	100	0	50	32	16	20	32	1.94
61687231--61687272	21	2.0	21	90	0	66	14	57	7	21	1.61
61689110--61689145	15	2.3	15	90	4	54	52	0	0	47	1.00
61694391--61694435	20	2.2	21	84	11	58	44	8	0	46	1.34
61695174--61695202	13	2.1	14	93	6	51	34	0	0	65	0.93
61695595--61695651	22	2.6	22	78	8	71	15	21	19	43	1.87
61701645--61701691	15	3.0	16	84	12	62	53	0	0	46	1.00
61702735--61702865	67	2.0	67	95	0	235	25	32	19	21	1.97
61715445--61715470	1	26.0	1	100	0	52	100	0	0	0	0.00
61716219--61716451	122	1.9	122	85	5	319	31	8	18	40	1.81
61725115--61725156	18	2.2	21	84	16	56	47	2	2	47	1.28
61728002--61728064	22	2.9	22	83	9	67	19	25	17	38	1.93
61728015--61728067	22	2.4	22	87	6	72	13	26	18	41	1.87
61733073--61733124	11	4.6	11	85	2	68	25	32	1	40	1.67
61733072--61733148	22	3.5	21	81	10	75	28	28	1	41	1.64
61733072--61733148	11	6.9	11	73	16	61	28	28	1	41	1.64
61733108--61733207	51	2.0	51	86	4	139	28	25	2	45	1.65
61733210--61733239	14	2.1	15	93	6	53	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61737668--61738107	125	3.5	126	90	1	688	29	23	17	29	1.97
61743244--61743273	11	2.6	11	94	5	51	60	0	3	36	1.14
61744396--61744440	23	2.0	22	83	12	56	44	2	4	48	1.35
61747127--61747298	93	1.8	93	89	0	272	40	15	17	26	1.89
61754057--61754096	13	3.0	14	82	14	57	45	0	0	55	0.99
61754275--61754312	15	2.6	15	87	4	51	39	18	5	36	1.73
61768566--61768622	20	2.7	21	75	22	57	64	1	1	31	1.13
61768584--61768669	10	9.0	10	71	13	58	65	1	2	31	1.13
61768609--61768665	18	3.2	18	82	7	64	63	1	1	33	1.15
61768609--61768636	8	3.5	8	100	0	56	67	0	0	32	0.91
61769312--61769379	32	2.0	33	88	8	102	32	20	1	45	1.60
61770717--61770765	24	2.0	24	92	0	80	36	14	28	20	1.92
61773367--61773542	87	2.0	87	88	0	262	33	21	21	23	1.97
61776354--61776385	9	3.7	9	91	8	57	21	0	0	78	0.76
61781391--61781455	31	2.1	31	94	0	112	36	7	9	46	1.65
61786257--61786299	18	2.4	18	85	11	61	23	2	4	69	1.18
61786417--61786459	3	14.3	3	100	0	86	32	0	0	67	0.91
61794780--61794843	22	2.9	21	73	13	56	56	1	3	39	1.25
61795138--61795195	23	2.6	22	79	17	66	74	3	13	8	1.19
61795166--61795221	24	2.3	25	84	9	71	75	3	7	14	1.16
61795186--61795230	24	1.9	23	86	4	63	75	2	4	17	1.07
61795464--61795503	19	2.1	19	95	0	71	57	0	7	35	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61795744--61795785	15	2.9	15	82	10	52	52	0	0	47	1.00
61795892--61796059	47	3.7	46	72	16	143	47	3	2	46	1.35
61795951--61796011	28	2.2	28	85	5	81	50	3	0	45	1.17
61795917--61796133	91	2.4	90	86	3	308	47	3	2	46	1.34
61795951--61796093	44	3.2	42	70	20	119	48	2	2	46	1.28
61795958--61796101	47	3.1	47	66	16	129	49	3	2	45	1.31
61799239--61799309	36	2.0	36	91	0	115	56	11	26	5	1.56
61801925--61802026	51	2.0	51	96	0	186	41	11	25	21	1.87
61804067--61804849	150	5.1	150	76	10	539	31	17	17	33	1.93
61810094--61810128	3	11.3	3	93	6	61	0	31	2	65	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211