genome.fa.s21.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  121  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38293451--38294358	44	20.9	43	70	12	368	26	23	20	29	1.99
38293456--38294358	217	4.2	217	92	0	1500	27	23	20	29	1.99
38302367--38302412	24	1.9	24	86	0	65	13	26	15	45	1.82
38306168--38306199	16	2.0	16	100	0	64	68	0	6	25	1.12
38306387--38306445	30	2.0	31	86	6	86	61	8	1	28	1.35
38313003--38313043	9	4.7	9	79	14	50	70	2	0	26	0.99
38313003--38313033	16	1.9	16	93	0	53	70	0	0	29	0.87
38317443--38317480	18	2.1	18	90	0	58	50	2	0	47	1.15
38318205--38318303	49	2.0	48	94	1	171	18	22	5	54	1.62
38319010--38319066	27	2.1	27	83	6	71	61	0	0	38	0.96
38337433--38337473	16	2.6	16	82	17	50	56	0	0	43	0.99
38337435--38337474	18	2.3	18	87	8	57	55	0	0	45	0.99
38337572--38337606	15	2.2	16	90	5	54	51	0	0	48	1.00
38340775--38340827	5	10.0	5	76	11	52	71	3	22	1	1.12
38352149--38352240	45	2.0	45	85	0	121	35	20	18	25	1.95
38356347--38356380	12	2.8	12	90	0	50	38	2	8	50	1.49
38356577--38356647	31	2.3	31	87	2	99	33	9	11	45	1.73
38359783--38359912	62	2.1	62	81	9	149	33	16	8	42	1.78
38360484--38360535	24	2.2	24	85	0	68	53	9	3	32	1.51
38362300--38362364	26	2.3	29	82	7	73	40	6	0	53	1.26
38363799--38363841	3	14.3	3	100	0	86	67	0	0	32	0.91
38372919--38372962	21	2.2	20	83	4	52	43	2	2	52	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38372965--38373007	8	5.5	8	88	5	61	37	0	4	58	1.19
38372965--38373007	15	2.8	15	85	3	59	37	0	4	58	1.19
38375828--38375863	3	12.0	3	100	0	72	66	0	0	33	0.92
38378782--38378857	35	2.2	35	92	0	125	51	11	2	34	1.53
38380834--38380870	19	2.0	19	94	5	67	40	0	5	54	1.24
38380835--38380877	19	2.4	18	85	11	61	44	0	6	48	1.29
38385181--38385249	32	2.2	32	84	5	86	50	14	2	31	1.57
38385198--38385259	32	1.9	32	83	0	79	54	16	1	27	1.51
38386690--38386730	21	2.0	21	90	0	64	43	12	7	36	1.70
38388740--38389503	4	191.0	4	90	0	1141	45	25	5	24	1.74
38390497--38390530	17	1.9	18	88	5	52	47	8	2	41	1.50
38407834--38407927	28	3.4	28	79	2	109	28	24	23	23	1.99
38408302--38408535	81	2.9	81	81	9	255	21	13	20	44	1.85
38408302--38408535	27	8.7	27	78	8	228	21	13	20	44	1.85
38408384--38408561	27	6.6	26	78	12	112	22	11	18	47	1.80
38408367--38408561	54	3.6	52	79	9	196	22	12	18	46	1.82
38408356--38408561	81	2.5	78	83	9	218	23	12	18	46	1.82
38417014--38417112	27	3.6	27	82	4	126	33	23	21	22	1.97
38417014--38417107	28	3.4	28	82	5	129	32	23	21	22	1.98
38417444--38417907	27	17.2	26	79	5	354	22	14	18	45	1.84
38417444--38417907	54	8.6	53	80	6	412	22	14	18	45	1.84
38417444--38417907	81	5.7	80	77	7	425	22	14	18	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38423504--38423542	6	6.3	6	82	5	51	15	23	0	61	1.33
38423504--38423542	18	2.1	19	90	4	62	15	23	0	61	1.33
38428659--38428712	26	2.1	26	100	0	108	22	24	14	38	1.91
38430638--38430697	30	2.0	31	86	3	86	40	0	40	20	1.52
38430912--38430949	9	4.2	9	93	0	67	31	10	13	44	1.77
38432396--38432450	23	2.5	21	77	19	58	16	1	29	52	1.54
38444981--38445015	18	1.9	18	94	0	61	20	25	48	5	1.71
38444983--38445022	18	2.2	18	86	0	53	25	27	42	5	1.75
38447480--38447571	28	3.2	28	77	7	96	32	22	16	28	1.96
38452500--38452714	113	1.9	113	88	1	324	33	14	23	27	1.94
38452496--38452728	112	2.1	113	85	3	319	37	13	21	27	1.91
38457583--38457642	30	2.0	31	86	3	86	40	0	40	20	1.52
38460222--38460266	15	3.1	14	81	12	56	64	11	4	20	1.42
38464247--38464326	30	2.7	30	86	0	115	46	11	22	20	1.82
38483600--38483638	18	2.1	18	85	4	51	56	15	7	20	1.63
38483884--38483924	20	2.0	21	86	13	59	46	17	4	31	1.69
38488720--38488919	82	2.4	83	81	5	226	20	16	27	36	1.94
38488786--38488932	41	3.6	39	76	10	150	18	16	28	36	1.92
38488845--38488932	42	2.1	41	82	2	104	20	14	29	35	1.93
38488721--38488932	83	2.5	80	79	7	201	19	16	28	34	1.94
38489841--38489926	7	11.9	7	80	16	86	17	0	50	32	1.47
38489840--38489926	38	2.4	35	87	11	122	17	0	49	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38490513--38490557	21	2.2	20	84	15	56	77	0	4	17	0.92
38490645--38490671	4	6.8	4	100	0	54	77	0	0	22	0.76
38491796--38491820	12	2.1	12	100	0	50	24	8	8	60	1.52
38491849--38491887	17	2.4	17	87	12	55	51	2	10	35	1.50
38492193--38492250	26	2.2	26	96	0	107	39	15	3	41	1.64
38494182--38494305	43	2.9	42	83	4	149	25	16	31	25	1.97
38497637--38497725	44	2.0	45	91	6	146	22	29	21	26	1.99
38497656--38498322	173	3.9	174	88	2	952	29	25	18	26	1.98
38497743--38498322	44	13.4	44	69	9	255	29	24	18	27	1.98
38497650--38498244	44	13.7	44	68	12	202	28	25	18	26	1.98
38498328--38498449	45	2.7	45	77	8	115	29	25	18	26	1.98
38498226--38498743	217	2.5	203	82	10	655	27	24	18	28	1.98
38498322--38498747	44	9.8	44	66	13	155	27	24	18	28	1.98
38500946--38501018	6	12.7	6	82	8	64	12	5	9	72	1.26
38500929--38501006	39	1.9	39	85	10	104	11	8	6	73	1.26
38507737--38508001	43	6.2	43	80	2	275	21	19	29	29	1.98
38507737--38507943	85	2.4	86	89	3	312	21	19	29	28	1.98
38507737--38508001	85	3.1	85	84	3	302	21	19	29	29	1.98
38515833--38515857	2	12.5	2	100	0	50	0	52	0	48	1.00
38517553--38517579	11	2.5	11	100	0	54	33	0	0	66	0.92
38523302--38523344	19	2.3	18	80	4	50	46	2	4	46	1.36
38524941--38525023	15	5.4	15	68	20	55	30	2	8	59	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38526867--38526910	19	2.4	18	84	3	61	31	2	18	47	1.61
38529309--38529378	25	2.8	25	88	0	113	24	24	24	27	2.00
38536886--38537004	25	4.8	25	87	0	166	26	21	22	28	1.99
38542399--38542565	25	6.7	25	84	3	194	21	21	20	35	1.96
38542399--38542606	75	2.8	72	80	6	220	22	21	20	35	1.96
38542399--38542606	50	4.2	50	80	4	190	22	21	20	35	1.96
38549793--38549980	42	4.5	42	83	3	220	30	22	18	29	1.97
38549804--38549962	84	1.9	83	90	3	257	30	20	17	30	1.96
38549804--38549980	84	2.1	83	87	5	250	31	20	18	29	1.96
38553104--38553167	26	2.5	26	94	0	110	25	10	9	54	1.65
38566394--38566574	38	4.6	39	79	10	192	25	27	23	23	2.00
38573567--38573751	79	2.3	80	83	7	225	24	27	23	24	2.00
38573567--38573751	40	4.6	41	78	10	204	24	27	23	24	2.00
38579147--38579205	19	3.2	18	83	11	66	64	3	6	25	1.34
38579156--38579204	25	2.0	25	83	0	62	67	2	8	22	1.28
38600458--38600506	21	2.3	21	79	6	55	53	10	0	36	1.35
38605581--38605625	22	2.0	22	95	0	81	53	17	13	15	1.73
38606154--38606179	4	6.5	4	100	0	52	50	0	23	26	1.50
38631828--38631867	19	2.2	19	91	8	66	35	2	5	57	1.34
38631977--38632001	7	3.6	7	100	0	50	60	0	0	40	0.97
38632374--38632475	47	2.2	47	94	0	186	45	4	5	44	1.49
38636441--38636465	11	2.3	11	100	0	50	16	8	0	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38646094--38646151	30	1.9	30	85	0	80	43	1	24	31	1.64
38646489--38646730	50	4.7	50	84	3	277	26	23	29	20	1.99
38646489--38646738	100	2.4	103	86	5	344	26	23	29	21	1.99
38654488--38655543	132	8.0	132	92	0	1709	30	19	25	24	1.98
38654488--38655543	529	2.0	529	92	0	1781	30	19	25	24	1.98
38654488--38655543	397	2.7	397	93	0	1785	30	19	25	24	1.98
38656953--38656977	11	2.3	11	100	0	50	16	8	0	76	1.02
38658499--38658551	26	2.0	26	82	7	63	30	5	3	60	1.37
38660171--38660205	17	2.1	17	88	0	52	71	0	0	28	0.86
38671648--38671944	50	5.8	50	79	5	267	28	20	28	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211