genome.fa.s21.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  187  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57868582--57868669	26	3.3	26	90	3	140	31	3	9	55	1.48
57875382--57875417	17	2.1	18	94	5	65	63	2	5	27	1.30
57878321--57878358	19	1.9	19	85	15	51	39	18	2	39	1.65
57887285--57887470	37	5.0	37	93	0	300	37	13	20	27	1.91
57887433--57887556	46	2.8	46	91	3	200	33	16	22	28	1.95
57890063--57890186	30	4.1	30	93	1	203	25	24	6	43	1.78
57890073--57890180	15	7.2	15	67	12	78	25	22	7	44	1.79
57894755--57894878	30	4.1	30	92	1	194	25	23	6	44	1.77
57894765--57894872	15	7.2	15	68	12	69	25	21	7	45	1.78
57897477--57897531	24	2.3	24	100	0	110	43	32	16	7	1.75
57904556--57904685	21	6.2	21	74	0	89	15	21	19	43	1.87
57904532--57904687	42	3.7	42	86	0	179	15	22	18	43	1.87
57912424--57912554	49	2.6	50	86	4	167	32	19	26	22	1.97
57912432--57912573	25	5.7	25	77	7	128	31	19	28	21	1.97
57912896--57912939	21	2.1	21	83	8	54	43	25	0	31	1.55
57922373--57922424	24	2.2	24	89	0	77	55	9	1	32	1.43
57924342--57924393	24	2.2	24	89	0	77	55	9	1	32	1.43
57930717--57930744	14	2.0	14	100	0	56	14	28	14	42	1.84
57939859--57939911	13	4.2	13	79	11	56	11	9	1	77	1.07
57941196--57941261	29	2.2	30	86	10	91	53	0	1	45	1.09
57941215--57941264	16	3.2	16	70	18	52	50	0	0	50	1.00
57941798--57941862	6	10.8	6	90	9	98	81	1	0	16	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57944993--57945031	18	2.0	20	85	9	55	76	7	2	12	1.09
57946727--57946802	21	3.5	21	72	13	82	27	19	13	39	1.89
57946689--57946803	44	2.6	44	94	0	194	28	22	13	34	1.93
57946708--57946781	23	3.3	23	70	14	82	32	17	16	33	1.92
57946821--57947075	87	3.0	85	74	8	248	29	21	18	30	1.97
57948331--57948359	1	29.0	1	100	0	58	0	0	0	100	0.00
57959131--57959169	18	2.0	20	85	9	55	76	7	2	12	1.09
57966284--57966328	23	1.9	24	86	4	65	62	2	0	35	1.08
57967563--57967600	20	2.0	20	85	15	53	34	0	7	57	1.28
57974308--57974369	30	2.1	30	90	6	99	29	3	9	58	1.46
57974494--57974526	11	2.9	12	86	13	52	66	0	0	33	0.92
57980580--57980624	22	2.0	22	86	0	63	33	4	4	57	1.38
57982523--57982569	13	3.5	13	81	16	51	42	2	2	53	1.25
57983429--57983528	51	1.9	54	84	10	136	39	10	4	47	1.56
57998356--57998604	127	2.0	128	82	7	310	35	14	9	40	1.78
58000926--58000953	6	4.7	6	100	0	56	50	0	0	50	1.00
58005491--58005528	19	2.0	19	90	10	60	57	7	0	34	1.28
58005518--58005561	20	2.2	20	84	11	56	54	2	2	40	1.25
58011270--58011368	46	2.2	46	94	0	180	45	2	7	45	1.42
58011325--58011386	19	3.3	19	75	20	76	46	1	9	41	1.46
58011385--58011525	29	4.9	29	95	1	257	28	2	26	42	1.67
58011382--58011525	57	2.5	58	95	1	263	28	2	26	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58011552--58011608	25	2.3	25	81	3	80	43	12	3	40	1.59
58011521--58011653	69	1.9	71	89	3	207	46	12	1	39	1.51
58012777--58012801	7	3.6	7	100	0	50	60	12	0	28	1.32
58013994--58014028	10	3.2	11	88	12	54	45	0	37	17	1.48
58018013--58018107	44	2.1	45	86	5	131	32	5	29	32	1.80
58018264--58018298	18	2.0	17	88	5	52	54	0	0	45	0.99
58018284--58018459	55	3.1	54	67	24	153	47	6	2	43	1.42
58018379--58018415	16	2.2	17	86	13	51	54	0	2	43	1.14
58018250--58018545	117	2.5	119	97	1	551	48	4	2	44	1.38
58018279--58018466	61	3.2	61	69	13	183	47	6	2	43	1.42
58018499--58018535	16	2.2	17	86	13	51	54	0	2	43	1.14
58018540--58018758	44	4.8	46	68	21	156	47	3	2	46	1.34
58018475--58018737	91	2.7	99	83	11	364	47	3	2	46	1.32
58018543--58018758	91	2.4	91	93	0	369	46	3	2	46	1.35
58022983--58023025	24	1.9	22	86	13	61	46	13	20	18	1.83
58023663--58023715	24	2.2	24	79	0	61	52	13	3	30	1.57
58024364--58024417	27	2.0	27	96	0	99	38	11	12	37	1.79
58027268--58027627	22	16.0	21	73	17	214	31	1	12	54	1.45
58027296--58027348	19	2.7	19	88	2	70	35	0	13	50	1.41
58027302--58027461	83	1.9	84	84	10	197	33	0	12	54	1.38
58027393--58027453	19	3.1	19	82	13	86	32	0	13	54	1.39
58027402--58027679	49	5.7	49	84	4	359	32	1	13	53	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58027434--58027627	27	7.8	26	78	16	214	31	1	13	54	1.46
58027402--58027622	98	2.3	98	95	0	397	32	0	12	53	1.45
58027590--58027652	8	7.4	8	72	13	54	34	0	17	47	1.48
58027822--58027903	38	2.2	38	97	0	155	54	3	2	39	1.31
58029588--58029631	6	7.3	6	92	0	70	31	34	34	0	1.58
58033184--58033426	50	4.8	50	91	0	360	25	22	30	21	1.98
58035722--58035766	22	2.1	21	91	4	72	0	33	2	64	1.06
58035832--58035907	27	2.8	28	80	7	95	21	35	23	19	1.96
58043249--58043393	74	2.0	73	82	4	175	32	17	13	36	1.89
58045722--58045758	3	12.0	3	94	5	65	64	0	32	2	1.07
58052676--58052715	20	2.0	20	90	0	62	27	10	12	50	1.72
58052661--58052727	34	1.9	35	90	3	109	31	8	13	46	1.74
58052655--58052731	14	5.0	15	71	20	52	33	9	14	42	1.77
58053531--58053579	13	3.2	16	69	19	50	46	0	0	53	1.00
58053522--58053579	29	2.0	30	82	3	73	43	3	1	51	1.28
58053593--58053629	16	2.3	17	81	13	51	59	2	0	37	1.12
58053655--58053711	15	3.5	15	73	17	60	50	1	0	47	1.11
58072863--58072888	3	8.7	3	100	0	52	69	0	0	30	0.89
58086448--58086527	24	3.2	24	68	22	74	37	0	10	52	1.35
58086448--58086552	51	2.0	52	94	3	185	39	0	10	50	1.37
58091503--58091546	23	1.9	23	90	0	70	31	2	4	61	1.28
58094067--58094115	16	3.0	16	77	14	55	22	0	4	73	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58105257--58105299	22	1.9	22	85	4	59	51	4	2	41	1.35
58105271--58105316	19	2.4	20	85	7	60	41	4	0	54	1.20
58106848--58106956	36	2.9	37	80	5	112	21	21	24	33	1.97
58111686--58111724	3	13.3	3	94	5	71	30	0	0	69	0.89
58119535--58119741	90	2.3	90	89	2	315	45	3	3	46	1.37
58119555--58119716	28	5.6	28	68	18	82	45	1	3	49	1.30
58119575--58119760	44	4.1	43	72	17	128	45	2	3	48	1.32
58119758--58119796	16	2.4	17	87	12	55	43	2	0	53	1.14
58119788--58119812	12	2.1	12	100	0	50	32	0	8	60	1.26
58119868--58119919	15	3.6	15	80	12	56	44	0	1	53	1.11
58119803--58120035	120	1.9	120	98	0	448	42	2	6	49	1.40
58119816--58120003	61	3.1	61	71	14	208	43	1	6	48	1.39
58119997--58120045	16	3.1	16	80	11	57	46	0	2	51	1.12
58133421--58133496	11	6.9	10	78	10	62	82	5	10	1	0.87
58133419--58133498	23	3.6	21	76	20	72	83	5	10	1	0.84
58133985--58134019	15	2.3	16	85	14	56	77	0	11	11	1.00
58133987--58134035	22	2.3	22	86	10	66	73	2	10	14	1.18
58133993--58134038	15	3.1	15	87	12	60	69	2	15	13	1.28
58135250--58136048	89	9.0	89	86	2	831	27	24	24	23	2.00
58135298--58136045	45	16.9	45	64	12	260	27	23	25	23	2.00
58137561--58137608	9	5.9	8	79	13	53	31	0	4	64	1.12
58139953--58139993	19	2.1	20	82	13	50	19	0	4	75	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58140952--58140978	14	1.9	14	100	0	54	37	22	3	37	1.72
58145482--58145533	27	1.9	27	92	0	86	26	34	21	17	1.95
58147669--58147715	23	2.0	23	87	0	67	46	14	10	27	1.78
58150395--58150739	169	2.0	169	99	0	681	47	11	10	30	1.73
58152826--58152866	19	2.1	20	82	13	50	19	0	4	75	0.98
58153825--58153851	14	1.9	14	100	0	54	37	22	3	37	1.72
58158355--58158406	27	1.9	27	92	0	86	26	34	21	17	1.95
58160542--58160588	23	2.0	23	87	0	67	46	14	10	27	1.78
58163268--58163611	169	2.0	168	98	0	670	47	11	10	30	1.73
58165396--58165454	24	2.4	25	86	8	77	13	30	22	33	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211