genome.fa.s21.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  109  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34271532--34271580	25	2.0	25	83	0	62	38	0	16	44	1.48
34275208--34275386	50	3.5	50	83	6	180	26	21	29	22	1.99
34275357--34275484	49	2.6	49	92	0	211	32	21	22	22	1.98
34275314--34275491	49	3.6	49	85	5	209	32	21	24	22	1.98
34276261--34276297	19	2.1	19	85	10	51	40	0	13	45	1.43
34282779--34283211	50	8.6	51	78	7	257	29	21	26	23	1.99
34282885--34283247	49	7.3	49	80	7	360	30	20	25	23	1.99
34282828--34283251	198	2.1	198	90	2	665	29	21	25	23	1.99
34282885--34283207	149	2.2	148	85	3	427	30	21	25	23	1.99
34285585--34285637	25	2.1	26	82	3	63	32	22	3	41	1.72
34302748--34302839	25	3.7	25	69	5	78	32	20	19	27	1.97
34302999--34303068	31	2.3	31	80	11	83	32	7	22	37	1.82
34315721--34315908	51	3.7	50	77	9	193	30	27	17	23	1.97
34326454--34326486	17	1.9	17	100	0	66	24	36	15	24	1.93
34327094--34327127	12	3.0	11	87	8	50	29	17	17	35	1.93
34337254--34337806	44	12.7	45	68	14	198	28	23	19	29	1.98
34337290--34337762	173	2.7	171	85	6	616	28	23	18	28	1.98
34337180--34337591	217	1.9	217	88	3	632	28	21	20	29	1.98
34337223--34337885	217	3.1	217	81	8	678	28	23	19	28	1.98
34337342--34337763	173	2.4	173	88	3	638	28	23	19	28	1.98
34344629--34344680	22	2.4	22	78	9	54	40	34	0	25	1.56
34344777--34344825	20	2.4	21	89	3	73	46	30	0	22	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34344869--34344980	7	15.7	7	72	10	75	50	28	1	19	1.58
34345320--34345483	41	4.0	41	76	5	170	34	28	17	20	1.95
34351437--34351497	19	3.2	19	70	9	61	32	16	3	47	1.63
34354266--34354310	22	2.1	22	87	4	65	35	11	13	40	1.80
34358427--34358734	27	11.4	27	83	2	332	39	22	19	18	1.92
34361125--34361532	27	15.2	27	83	1	462	41	21	18	17	1.90
34362716--34362806	6	15.5	6	80	4	69	23	5	0	71	1.06
34362715--34362809	17	5.5	16	75	14	82	24	5	0	70	1.07
34362714--34362807	12	8.1	11	79	12	91	25	5	0	69	1.10
34364935--34365045	52	2.1	52	96	0	204	29	10	14	45	1.79
34377868--34377935	26	2.6	26	90	0	109	22	23	29	25	1.99
34380512--34380574	26	2.4	26	84	5	74	42	14	9	33	1.78
34381997--34382035	14	2.7	14	84	4	51	20	20	5	53	1.64
34387246--34387292	24	2.0	24	83	8	60	17	34	0	48	1.47
34412924--34412968	22	2.0	22	87	8	65	31	2	26	40	1.68
34417497--34417585	27	3.3	27	84	3	108	24	24	10	40	1.86
34427544--34427587	13	3.3	13	78	15	54	43	2	6	47	1.42
34429641--34429942	40	7.6	40	86	0	388	14	28	18	38	1.90
34429677--34429942	20	13.3	20	70	1	120	13	29	18	38	1.89
34432728--34432761	13	2.5	13	95	4	59	14	5	0	79	0.91
34442551--34442686	54	2.5	54	80	4	150	33	20	28	17	1.96
34442559--34442771	27	7.9	27	72	6	117	31	20	26	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34448599--34448641	13	3.4	13	84	9	54	69	6	0	23	1.12
34450253--34450304	23	2.3	23	86	6	70	23	17	19	40	1.91
34458381--34458419	20	2.0	20	89	0	60	35	7	10	46	1.67
34465155--34465228	22	3.4	22	67	14	62	10	14	25	48	1.77
34465104--34465230	44	2.9	44	79	5	141	14	13	23	48	1.78
34471127--34471199	29	2.5	29	88	4	103	26	17	13	42	1.87
34471270--34471384	59	1.9	61	84	10	157	26	26	11	36	1.90
34471222--34471369	29	5.1	29	76	11	140	25	25	12	36	1.91
34471491--34471585	50	1.9	50	82	0	118	28	26	16	28	1.97
34476790--34476817	13	2.2	13	100	0	56	39	7	14	39	1.73
34487912--34487970	13	4.5	13	76	14	59	45	20	0	33	1.51
34487921--34488010	13	6.8	13	71	16	69	41	16	1	41	1.56
34487910--34488023	40	2.9	40	82	3	133	40	16	0	42	1.54
34489658--34489697	21	2.0	20	90	9	64	50	0	2	47	1.14
34497331--34497461	69	1.9	71	85	3	185	23	7	25	42	1.80
34498675--34498790	33	3.5	33	84	4	171	45	14	6	32	1.72
34501827--34502020	92	2.1	92	87	5	277	45	4	4	46	1.41
34501963--34502010	26	1.9	25	84	16	64	45	0	2	52	1.12
34502171--34502222	15	3.6	15	80	12	56	44	0	1	53	1.11
34502051--34502458	120	3.4	120	95	2	716	43	2	5	48	1.39
34502204--34502401	66	3.2	65	68	21	197	42	3	6	46	1.46
34502287--34502321	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34502407--34502441	18	2.0	17	88	5	52	45	0	0	54	0.99
34502407--34502461	15	3.4	16	80	16	53	47	0	1	50	1.11
34503926--34504113	45	4.2	45	87	4	247	21	17	27	34	1.95
34508578--34508652	37	2.0	37	100	0	150	42	16	2	38	1.62
34508577--34508638	20	3.2	20	61	21	51	41	16	3	38	1.64
34517272--34517310	19	2.1	19	100	0	78	15	10	20	53	1.70
34532738--34532922	51	3.7	50	76	6	194	31	27	16	25	1.96
34532734--34532916	102	1.8	101	87	3	278	32	27	15	25	1.95
34547559--34547696	69	2.0	69	100	0	276	37	21	4	36	1.74
34553181--34553240	17	3.5	17	100	0	120	26	36	21	15	1.93
34581451--34581516	26	2.5	26	80	0	87	27	27	18	27	1.98
34588246--34588319	24	3.2	24	78	18	93	32	14	10	41	1.81
34588246--34588337	45	2.0	45	87	0	130	31	17	10	40	1.84
34588539--34588664	40	3.2	40	98	0	243	45	14	11	29	1.79
34606055--34606153	50	2.0	48	80	3	108	48	18	20	13	1.80
34606149--34606192	20	2.2	20	83	0	52	81	4	4	9	0.96
34607432--34607818	88	4.4	88	86	2	537	26	18	26	28	1.98
34607432--34607818	174	2.2	175	88	2	571	26	18	26	28	1.98
34607524--34607744	43	5.1	44	62	6	126	26	18	26	28	1.98
34608111--34608233	50	2.4	51	91	1	194	25	17	26	31	1.97
34615047--34615297	41	6.2	40	80	4	270	21	28	15	34	1.94
34615048--34615284	40	5.8	40	78	8	246	20	28	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34616587--34616673	39	2.2	40	83	4	113	13	21	27	36	1.92
34616652--34616693	21	2.0	21	100	0	84	19	23	14	42	1.87
34616612--34616733	61	2.0	60	85	1	163	14	22	22	40	1.90
34616672--34616788	40	2.9	39	87	6	164	11	18	26	43	1.84
34625204--34625234	14	2.3	14	94	5	55	38	3	0	58	1.15
34628040--34628065	3	8.7	3	100	0	52	34	0	34	30	1.58
34633340--34633642	27	11.3	27	84	1	178	19	16	19	44	1.87
34633340--34633642	54	5.7	53	84	4	369	19	16	19	44	1.87
34633340--34633642	81	3.8	80	85	2	376	19	16	19	44	1.87
34637948--34637997	21	2.5	20	70	23	50	52	2	4	42	1.31
34638160--34638264	39	2.7	40	80	8	117	40	17	20	21	1.92
34638779--34638827	14	3.4	14	88	2	71	16	0	46	36	1.47
34638774--34638827	21	2.5	22	84	3	74	16	0	42	40	1.48
34638774--34638856	7	11.7	7	77	7	60	18	1	36	44	1.57
34642790--34643251	233	2.0	233	96	0	852	30	17	17	33	1.94
34650531--34650570	20	2.0	20	90	0	62	27	10	12	50	1.72
34650516--34650582	34	1.9	35	90	3	109	31	8	13	46	1.74
34650510--34650586	14	5.0	15	71	20	52	33	9	14	42	1.77
34652925--34653128	102	2.0	100	92	4	338	27	17	15	39	1.90
34657159--34657218	30	2.0	30	83	6	77	63	5	3	28	1.31
34657173--34657218	15	3.1	15	74	20	51	63	6	2	28	1.31
34657258--34657416	24	7.0	23	76	16	127	51	1	8	37	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34657339--34657444	23	4.8	22	73	19	71	55	2	3	37	1.33
34657339--34657447	46	2.4	46	85	10	145	55	3	3	37	1.35
34657365--34657455	23	3.9	23	72	11	71	54	4	4	36	1.40
34659211--34659808	97	6.1	94	91	3	628	26	24	20	28	1.99
34659211--34659808	148	4.1	143	84	7	686	26	24	20	28	1.99
34659211--34659808	194	3.1	196	86	6	745	26	24	20	28	1.99
34659211--34659776	245	2.3	245	92	1	935	25	25	19	28	1.99
34660116--34660176	24	2.5	24	82	10	79	31	24	9	34	1.88
34661131--34661166	8	4.2	8	89	10	54	11	5	0	83	0.80
34675601--34675891	150	1.9	148	84	3	377	22	28	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211