genome.fa.s21.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  174  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54248776--54248831	24	2.3	24	87	0	85	26	35	17	19	1.94
54249111--54249695	29	19.7	29	78	9	529	44	24	0	31	1.56
54249111--54249695	58	10.4	58	84	8	704	44	24	0	31	1.56
54249111--54249695	87	6.9	87	87	7	774	44	24	0	31	1.56
54249452--54249490	18	2.2	18	100	0	78	51	15	0	33	1.44
54253468--54253510	15	2.9	15	86	6	52	72	0	9	18	1.11
54254224--54254268	18	2.5	18	92	0	72	37	0	4	57	1.19
54254224--54254268	6	7.5	6	87	0	54	37	0	4	57	1.19
54260999--54261040	17	2.5	16	82	17	50	69	7	4	19	1.31
54266186--54266282	49	2.0	49	95	0	176	24	24	6	44	1.77
54266572--54266638	30	2.2	30	83	0	80	16	35	26	20	1.94
54268331--54268371	19	2.2	18	86	4	55	34	21	0	43	1.53
54274019--54274204	105	1.8	103	82	8	245	23	29	20	26	1.99
54274019--54274215	50	3.8	50	83	5	225	22	28	21	26	1.99
54276290--54276331	19	2.2	19	100	0	84	38	4	16	40	1.70
54276612--54276649	19	2.0	20	94	5	69	47	2	15	34	1.60
54286861--54286890	15	1.9	16	93	6	53	50	6	0	43	1.28
54286851--54287146	38	7.5	38	65	20	117	49	5	1	43	1.34
54286815--54287154	120	2.8	120	97	0	628	50	5	1	43	1.32
54286953--54286988	18	2.1	17	90	10	56	61	0	0	38	0.96
54287075--54287108	17	2.0	17	94	0	59	55	0	0	44	0.99
54293151--54293403	98	2.5	99	82	8	309	30	0	15	53	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54293407--54293440	17	1.9	18	94	5	61	38	0	5	55	1.24
54293407--54293444	18	2.3	17	86	13	53	34	0	5	60	1.19
54293477--54293534	27	2.1	27	81	6	64	25	34	25	13	1.93
54300100--54300167	29	2.3	30	82	7	77	45	7	14	32	1.73
54306582--54306787	42	4.9	42	88	3	299	30	21	22	25	1.99
54306582--54306787	85	2.4	84	88	4	299	30	21	22	25	1.99
54307024--54307083	30	2.0	30	100	0	120	53	3	6	36	1.44
54307237--54307272	12	3.0	12	95	0	63	2	38	16	41	1.63
54307261--54307329	21	3.3	21	81	4	77	1	37	20	40	1.61
54309938--54310449	9	59.2	9	71	19	235	39	0	15	44	1.50
54309943--54310062	16	7.9	16	69	19	96	35	1	17	45	1.58
54309957--54310111	25	6.2	25	77	11	129	38	1	15	45	1.55
54309983--54310102	34	3.4	34	73	14	100	35	1	16	45	1.58
54310085--54310184	50	2.0	50	86	3	139	42	0	15	43	1.46
54310120--54310150	16	1.9	16	100	0	62	32	0	22	45	1.53
54310136--54310465	34	10.0	34	72	23	187	40	0	13	45	1.47
54310033--54310193	84	1.9	84	86	5	227	41	0	14	44	1.45
54310134--54310360	65	3.8	64	75	16	225	39	0	14	45	1.45
54310045--54310357	145	2.1	145	92	5	524	41	0	14	44	1.44
54310263--54310376	16	7.1	16	70	23	71	35	0	17	46	1.48
54310230--54310326	49	2.0	50	85	6	135	41	0	15	43	1.47
54310227--54310660	43	10.0	43	67	23	187	40	0	13	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54310515--54310643	9	14.6	9	73	20	71	38	0	13	47	1.44
54310516--54310548	16	2.1	16	100	0	66	30	0	24	45	1.53
54310483--54310635	56	3.0	50	85	8	148	41	0	13	45	1.44
54310396--54310647	138	1.8	138	89	4	400	40	1	12	45	1.52
54310136--54310609	253	1.8	256	93	4	830	39	0	13	45	1.50
54310543--54310634	25	3.4	25	78	16	112	41	0	10	47	1.38
54310574--54310619	22	2.1	22	95	0	83	41	0	10	47	1.38
54310540--54310650	56	2.0	56	100	0	222	40	0	10	48	1.38
54310199--54310609	172	2.5	168	84	8	497	39	0	14	45	1.51
54310596--54310674	38	2.2	37	88	8	119	40	0	10	49	1.37
54311220--54311308	18	4.8	18	76	14	92	40	2	12	44	1.54
54311193--54311295	39	2.5	43	84	9	151	42	1	10	44	1.50
54314307--54314975	114	5.9	114	91	1	1020	25	27	21	24	2.00
54315461--54315524	31	2.1	31	88	5	94	34	0	29	35	1.58
54317099--54317131	15	2.2	15	94	0	57	18	45	12	24	1.83
54332848--54333064	41	5.3	41	93	0	371	29	19	27	23	1.98
54338513--54338544	17	1.9	17	93	6	57	43	0	3	53	1.16
54339174--54339353	94	1.9	94	95	2	326	35	10	36	17	1.84
54339866--54339921	27	2.1	27	82	0	67	41	32	16	10	1.82
54340032--54340191	43	3.7	41	71	17	112	31	22	15	31	1.94
54348133--54348157	13	1.9	13	100	0	50	40	0	32	28	1.57
54348146--54348281	63	2.2	62	81	7	150	41	4	33	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54348347--54348430	39	2.1	40	82	8	100	22	20	9	47	1.78
54350033--54350206	41	4.2	41	89	0	258	29	24	21	24	1.99
54352794--54352848	18	3.2	17	72	12	51	7	14	5	72	1.24
54352808--54352855	23	2.1	23	84	7	62	6	14	6	72	1.24
54352812--54352861	23	2.2	23	82	7	57	6	18	4	72	1.22
54358529--54358601	20	3.6	20	79	5	76	54	0	4	41	1.19
54358872--54358908	18	2.0	19	89	5	58	48	0	0	51	1.00
54359139--54359181	19	2.3	19	87	0	59	32	6	4	55	1.47
54361551--54361601	5	10.6	5	87	8	63	60	0	39	0	0.97
54361551--54361606	28	2.0	28	86	6	78	60	0	39	0	0.97
54364592--54364697	32	3.3	32	77	2	115	16	22	36	23	1.94
54369327--54369354	13	2.2	13	100	0	56	39	7	14	39	1.73
54372014--54372074	27	2.3	27	94	0	104	40	6	0	52	1.27
54372454--54372519	19	3.5	19	79	4	89	37	10	1	50	1.47
54372752--54372810	19	3.2	19	78	4	75	47	0	15	37	1.45
54373478--54373539	27	2.3	27	97	0	115	48	0	9	41	1.36
54373613--54373844	114	2.0	115	93	0	394	38	16	12	31	1.87
54374070--54374125	29	1.9	29	82	7	69	32	0	3	64	1.11
54375844--54375870	9	3.0	9	100	0	54	44	0	0	55	0.99
54382171--54382220	23	2.2	23	85	7	66	40	20	6	34	1.77
54387657--54387689	17	2.0	17	88	5	50	42	9	24	24	1.83
54387675--54387832	53	3.0	53	94	0	271	32	14	23	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54390403--54390463	29	2.1	30	90	9	99	29	24	3	42	1.70
54390654--54390682	10	2.7	11	94	5	51	24	0	0	75	0.80
54391615--54391639	7	3.6	7	100	0	50	28	0	12	60	1.32
54392644--54392757	57	2.0	59	82	6	144	39	1	8	50	1.44
54395419--54395452	17	2.0	17	100	0	68	23	52	11	11	1.70
54395803--54396294	126	3.9	125	90	3	740	26	19	17	36	1.94
54395803--54396293	249	2.0	251	90	2	781	26	19	17	36	1.94
54396393--54396477	33	2.5	34	88	3	127	42	20	1	36	1.60
54404423--54404472	21	2.4	21	87	9	68	58	2	6	34	1.34
54404423--54404474	19	2.5	20	81	12	61	57	1	5	34	1.33
54404729--54404780	24	2.1	25	82	3	61	51	5	7	34	1.54
54405280--54405311	11	2.8	12	90	9	50	68	18	0	12	1.20
54408248--54408359	5	22.8	5	96	3	210	58	0	0	41	0.98
54415251--54415702	224	2.0	224	92	0	760	23	24	27	24	2.00
54422646--54422676	3	10.3	3	100	0	62	67	0	0	32	0.91
54426423--54426498	39	1.9	39	94	0	134	21	15	27	35	1.94
54429794--54429838	21	2.1	21	91	0	72	31	2	28	37	1.69
54432393--54432438	3	15.7	3	78	13	51	39	0	2	58	1.10
54432392--54432438	13	3.7	13	82	2	60	40	0	2	57	1.11
54432905--54432938	17	1.9	18	88	5	52	41	0	23	35	1.55
54435149--54435187	16	2.4	17	95	4	71	71	2	0	25	0.98
54435183--54435283	30	3.4	30	83	4	125	28	22	3	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54435183--54435298	29	4.0	28	74	14	92	29	22	3	44	1.69
54435872--54435926	8	6.8	8	81	10	67	81	1	16	0	0.77
54435869--54435925	16	3.6	16	88	6	82	82	1	15	0	0.75
54435882--54435925	23	2.0	23	90	4	72	81	2	15	0	0.78
54435867--54435925	31	1.9	30	89	6	91	81	1	16	0	0.78
54436067--54436118	26	2.0	27	88	3	79	28	0	0	71	0.87
54436284--54436325	21	2.0	20	90	4	66	35	14	9	40	1.78
54436284--54436325	20	2.1	19	86	8	57	35	14	9	40	1.78
54436430--54436841	17	23.3	18	70	12	201	31	13	7	48	1.69
54436444--54436534	37	2.5	36	84	11	116	29	12	6	51	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211