genome.fa.s21.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  142  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44815226--44815300	28	2.7	28	93	0	123	37	4	2	56	1.32
44815230--44815303	23	3.0	23	82	9	67	37	4	1	56	1.27
44815634--44815676	19	2.2	20	87	4	61	67	6	0	25	1.15
44820053--44820150	42	2.3	42	91	0	160	20	26	15	37	1.92
44821880--44821943	24	2.7	24	77	0	65	48	1	31	18	1.58
44826817--44826859	19	2.2	20	83	4	52	51	30	0	18	1.47
44827749--44827773	4	6.2	4	100	0	50	0	24	24	52	1.48
44833652--44833684	12	2.8	12	100	0	66	15	27	15	42	1.86
44834856--44835142	83	3.4	85	76	9	268	42	11	15	30	1.82
44835258--44835303	16	3.0	16	75	6	51	65	0	0	34	0.93
44835253--44835302	22	2.3	23	79	10	59	66	0	0	34	0.92
44835337--44835393	21	2.7	20	82	15	62	71	15	0	12	1.13
44835357--44835391	7	5.0	7	96	0	61	71	17	0	11	1.14
44840045--44840095	13	3.9	13	84	0	75	33	7	25	33	1.85
44841826--44841878	26	2.0	26	96	0	97	28	7	32	32	1.85
44841826--44841868	13	3.3	13	73	0	50	27	9	32	30	1.88
44841836--44841886	13	3.9	13	78	0	57	29	7	27	35	1.85
44843940--44844244	72	4.2	72	90	4	447	54	15	6	23	1.64
44844678--44844725	18	2.7	18	100	0	96	37	12	14	35	1.84
44845551--44845579	3	9.7	3	100	0	58	34	0	31	34	1.58
44856344--44856422	38	2.1	38	100	0	158	48	5	10	36	1.59
44861355--44861403	10	4.5	11	85	12	57	55	2	4	38	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44862759--44862824	27	2.4	27	87	5	98	28	25	19	25	1.99
44870089--44870283	50	3.9	50	79	2	178	22	26	22	29	1.99
44873617--44873702	42	2.0	43	91	6	140	50	1	23	25	1.57
44879633--44879663	9	3.4	9	90	0	53	25	12	22	38	1.90
44879717--44879753	9	4.1	9	89	0	56	48	13	8	29	1.71
44880758--44880790	15	2.2	15	94	0	57	15	15	21	48	1.81
44881013--44881069	25	2.3	25	76	8	64	17	22	19	40	1.91
44881051--44881117	24	2.8	24	77	11	73	17	26	20	34	1.96
44881051--44881170	25	4.8	25	71	11	86	22	24	20	33	1.97
44881890--44881922	15	2.3	15	89	5	50	39	0	24	36	1.56
44887896--44888007	50	2.3	50	80	14	117	24	24	19	32	1.98
44887938--44888000	25	2.5	24	69	16	56	23	23	20	31	1.98
44888727--44888759	15	2.3	15	89	5	50	39	0	24	36	1.56
44890327--44890353	14	1.9	14	100	0	54	37	11	7	44	1.68
44894053--44894096	20	2.1	22	84	16	58	68	9	9	13	1.40
44896896--44897065	35	5.1	33	79	10	177	42	17	21	18	1.89
44896896--44897064	67	2.6	67	93	1	279	42	17	21	18	1.90
44897322--44897359	14	2.8	13	92	7	67	36	10	5	47	1.61
44907134--44907402	43	6.3	43	88	2	371	23	29	18	28	1.98
44911062--44911115	23	2.3	23	90	0	90	61	0	0	38	0.96
44911075--44911114	11	3.5	11	80	6	53	67	0	0	32	0.91
44911148--44911209	23	2.7	23	82	2	72	30	48	0	20	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44911171--44911212	16	2.8	15	89	7	59	30	50	0	19	1.48
44911163--44911212	7	6.9	7	77	8	55	30	50	0	20	1.49
44911574--44911619	7	6.6	7	82	0	56	32	54	0	13	1.39
44911732--44911776	7	6.4	7	86	0	54	33	44	0	22	1.53
44911732--44911776	21	2.1	21	88	8	65	33	44	0	22	1.53
44912297--44912698	41	9.8	41	83	1	437	29	28	20	22	1.98
44912745--44912854	40	2.8	40	80	4	125	21	22	20	34	1.97
44913401--44913498	49	2.0	49	100	0	196	26	8	12	53	1.66
44919190--44919233	19	2.2	19	84	12	52	47	0	2	50	1.13
44919952--44920005	25	2.1	26	86	10	76	31	3	1	62	1.23
44921814--44921847	17	2.0	17	100	0	68	41	11	17	29	1.85
44924399--44924423	13	1.9	13	100	0	50	16	12	8	64	1.49
44924685--44924733	17	2.9	17	82	8	57	24	0	4	71	1.03
44924828--44924923	19	4.8	19	73	11	77	35	3	1	60	1.19
44924828--44924923	10	9.6	10	74	6	79	35	3	1	60	1.19
44926336--44926421	43	2.0	43	93	0	145	15	37	10	37	1.81
44933106--44933134	3	9.7	3	100	0	58	34	0	0	65	0.93
44934575--44934630	22	2.5	23	82	2	69	51	1	1	44	1.22
44934606--44934645	16	2.5	16	91	0	62	47	2	7	42	1.45
44934656--44934834	68	2.9	59	81	13	232	41	4	8	45	1.56
44934718--44934745	9	3.1	9	100	0	56	32	0	10	57	1.33
44934634--44934804	68	2.5	68	95	1	301	40	4	8	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44942164--44942199	6	6.0	6	96	0	63	33	13	16	36	1.89
44943549--44943578	15	2.0	15	100	0	60	46	20	13	20	1.83
44943734--44943772	20	2.0	20	90	5	62	51	17	0	30	1.46
44943739--44943779	20	2.1	20	86	4	57	56	14	2	26	1.51
44943722--44944062	110	2.9	118	82	11	445	51	12	2	32	1.54
44944129--44944238	55	2.0	55	98	0	211	51	10	0	36	1.43
44944155--44944247	29	3.3	28	69	18	86	49	11	0	38	1.40
44949569--44949612	17	2.6	17	82	13	56	11	9	4	75	1.19
44951898--44952017	57	2.1	57	100	0	240	38	24	10	26	1.88
44971250--44971670	138	3.1	138	90	2	668	44	6	8	40	1.59
44980609--44980671	20	2.8	22	79	18	60	38	0	3	58	1.14
44993107--44993213	46	2.3	46	90	0	169	31	21	17	28	1.96
44995139--44995201	20	2.8	22	79	18	60	38	0	3	58	1.14
44999931--44999986	27	2.1	27	82	0	67	41	17	17	23	1.90
45004161--45004307	77	1.9	75	86	5	206	29	15	8	46	1.75
45006158--45006527	187	2.0	187	82	3	458	27	16	22	33	1.95
45010536--45010582	18	2.5	20	83	16	64	25	2	14	57	1.49
45021740--45021780	21	2.0	21	90	4	66	26	21	31	19	1.97
45023260--45023301	13	3.2	13	83	9	50	38	21	2	38	1.67
45023747--45023784	20	1.9	20	89	10	60	39	23	26	10	1.87
45028472--45028502	13	2.4	13	94	0	53	16	6	22	54	1.64
45034739--45034773	17	2.1	18	89	10	56	11	5	5	77	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45036791--45036834	11	3.7	12	79	11	54	75	4	11	9	1.19
45036792--45036839	24	2.0	25	95	4	89	75	4	10	10	1.18
45043935--45043961	14	1.9	14	100	0	54	51	18	14	14	1.76
45044893--45045042	49	3.1	49	94	0	255	27	26	7	39	1.82
45046109--45046194	43	2.0	43	86	0	118	27	19	1	51	1.55
45047378--45047410	16	1.9	18	88	11	52	21	12	0	66	1.23
45047662--45047692	15	2.1	15	100	0	62	54	0	0	45	0.99
45049784--45049904	49	2.5	49	81	6	129	17	24	22	35	1.95
45049767--45049907	25	5.7	24	72	15	92	17	26	21	34	1.96
45049828--45049913	24	3.6	25	75	9	72	15	26	22	36	1.93
45051148--45051318	32	5.4	31	84	6	184	39	22	19	18	1.93
45051148--45051318	64	2.7	63	87	4	229	39	22	19	18	1.93
45051316--45051365	26	1.9	26	91	0	82	30	28	28	14	1.95
45051325--45051374	26	1.9	26	87	0	73	34	24	24	18	1.96
45051362--45051421	27	2.2	27	85	11	79	30	21	26	21	1.99
45051490--45051570	23	3.5	23	81	6	92	48	25	4	20	1.70
45051610--45052002	27	14.6	27	85	0	518	24	22	18	34	1.96
45054320--45054395	37	2.1	37	94	0	134	23	19	22	34	1.97
45056724--45056754	4	7.5	4	96	3	53	29	0	0	70	0.87
45062030--45062054	13	1.9	13	100	0	50	88	0	12	0	0.53
45062698--45063001	44	6.5	47	73	14	186	31	17	21	29	1.96
45062748--45063273	89	5.8	88	75	9	362	32	17	20	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45062748--45063276	44	11.6	45	73	7	298	32	17	20	29	1.96
45063490--45063525	9	3.9	9	92	3	54	72	0	0	27	0.85
45064861--45064895	4	8.5	4	96	3	61	28	0	0	71	0.86
45065816--45065851	18	2.0	18	88	0	54	47	13	13	25	1.80
45066067--45066126	30	2.0	31	83	3	77	20	38	0	41	1.52
45068241--45068460	29	7.6	29	79	2	226	40	13	24	21	1.89
45068206--45068460	87	2.9	88	86	2	325	40	12	23	22	1.89
45068241--45068472	117	2.0	115	82	7	281	40	14	22	21	1.90
45078726--45078772	20	2.6	17	76	20	51	51	0	0	48	1.00
45078733--45078772	20	2.0	20	100	0	80	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211