genome.fa.s21.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  160  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50223515--50223582	25	2.7	26	82	8	79	17	22	20	39	1.92
50223645--50223696	25	2.1	25	85	7	70	25	25	17	32	1.97
50225341--50225389	19	2.6	18	84	12	55	81	2	4	12	0.91
50230847--50230873	14	1.9	14	100	0	54	25	0	0	74	0.83
50233973--50234013	21	2.0	21	90	0	64	19	29	21	29	1.98
50238734--50238774	21	2.0	21	85	9	57	60	4	0	34	1.18
50241587--50241611	11	2.3	11	100	0	50	8	0	8	84	0.79
50243294--50243333	20	2.0	20	100	0	80	35	5	20	40	1.74
50247294--50247490	98	2.0	98	93	0	340	37	26	9	26	1.87
50248806--50248879	19	3.8	19	84	7	103	32	14	13	39	1.86
50249902--50249961	26	2.3	26	80	11	70	41	8	15	35	1.77
50249903--50249963	13	4.7	13	73	15	54	42	6	14	36	1.72
50251962--50252096	72	1.9	72	92	0	225	57	14	5	22	1.59
50252525--50252572	18	2.7	18	90	0	69	39	12	12	35	1.81
50255344--50255425	25	3.3	25	92	0	128	47	25	25	1	1.59
50255433--50255467	11	3.2	11	91	0	52	48	25	22	2	1.64
50258082--50258125	22	2.0	22	90	4	70	72	2	25	0	0.96
50267643--50267709	35	1.9	35	93	0	116	25	20	23	29	1.99
50267837--50267921	32	2.8	30	79	13	84	28	12	27	31	1.93
50271559--50271597	18	2.1	19	85	4	53	51	41	0	7	1.31
50272755--50272793	18	2.2	18	90	4	62	38	0	2	58	1.12
50273856--50273925	11	6.5	11	76	12	56	77	0	2	20	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50273887--50273939	13	4.1	13	85	0	70	84	0	0	15	0.61
50273895--50273955	10	5.6	10	78	21	61	81	0	0	18	0.68
50273895--50273955	8	6.7	9	76	14	54	81	0	0	18	0.68
50273876--50273954	12	6.6	12	76	14	56	78	0	1	20	0.82
50273998--50274542	1	545.0	1	88	0	793	93	0	2	3	0.41
50274548--50274723	1	176.0	1	72	0	82	13	0	3	82	0.82
50274551--50274723	26	6.5	25	76	14	136	13	0	3	82	0.83
50274548--50274700	43	3.5	41	77	14	139	12	0	3	83	0.77
50274548--50274726	59	3.0	57	77	10	164	13	0	3	82	0.82
50274575--50274727	81	1.9	81	84	10	206	13	0	3	82	0.85
50275314--50275347	1	34.0	1	93	0	59	97	0	2	0	0.19
50275605--50275651	16	2.9	16	83	3	58	85	0	0	14	0.61
50275605--50275652	11	4.4	11	78	7	53	85	0	0	14	0.60
50275634--50275691	10	5.5	11	74	17	52	70	0	0	29	0.87
50275646--50275725	9	8.9	9	72	15	67	67	0	0	32	0.91
50275658--50275726	36	2.0	33	88	8	102	69	0	0	30	0.89
50275668--50275715	25	1.9	25	91	0	78	72	0	0	27	0.84
50275658--50275709	11	4.5	11	73	21	52	71	0	0	28	0.87
50275752--50275800	15	3.1	15	78	18	55	73	0	2	24	0.94
50275852--50275896	12	3.8	12	85	8	58	71	0	0	28	0.87
50275836--50275870	17	2.0	18	88	5	54	60	0	0	40	0.97
50275872--50275937	15	4.3	15	75	5	51	74	0	0	25	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50275901--50275947	6	7.3	6	81	13	58	78	0	0	21	0.75
50275894--50275929	15	2.2	16	85	14	56	66	0	0	33	0.92
50275943--50275972	14	2.1	14	93	0	51	50	0	0	50	1.00
50275950--50275993	21	2.1	21	86	0	61	40	0	4	54	1.21
50275988--50276051	20	3.0	21	81	9	85	65	1	0	32	1.02
50276006--50276058	27	2.0	27	84	0	70	64	1	0	33	1.05
50276033--50276071	18	2.1	19	90	9	62	82	0	0	17	0.68
50276886--50276915	1	30.0	1	100	0	60	0	0	0	100	0.00
50276934--50276993	23	2.7	23	92	2	95	30	0	1	68	0.99
50276998--50277035	11	3.5	11	89	10	53	15	0	0	84	0.63
50277006--50277061	12	4.6	12	78	10	60	23	1	0	75	0.90
50277125--50277152	11	2.5	11	100	0	56	10	0	0	89	0.49
50277086--50277202	37	3.0	37	85	9	137	27	0	0	72	0.85
50277163--50277188	1	26.0	1	100	0	52	0	0	0	100	0.00
50277268--50277318	1	51.0	1	84	0	57	7	0	1	90	0.53
50277258--50277304	22	2.2	21	84	3	58	8	4	4	82	0.91
50277268--50277317	13	3.7	13	80	19	66	8	0	2	90	0.54
50277268--50277319	14	3.7	14	82	7	70	9	0	1	88	0.59
50277278--50277320	15	2.9	15	89	0	68	11	0	2	86	0.67
50277884--50277926	15	2.6	17	82	10	54	58	0	9	32	1.30
50277938--50277982	16	2.8	16	90	6	65	77	0	0	22	0.76
50277941--50277993	14	3.6	14	78	9	61	79	0	0	20	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50278076--50278142	18	3.9	17	78	11	66	20	0	2	76	0.92
50278099--50278176	12	5.9	12	70	21	50	20	1	2	75	0.99
50278129--50278208	35	2.2	35	80	12	83	25	2	2	70	1.13
50278199--50278308	20	5.5	19	70	16	71	25	0	0	73	0.89
50278220--50278278	31	1.9	31	86	10	86	27	0	0	72	0.84
50278093--50278305	95	2.3	93	77	11	220	24	0	1	72	1.00
50278214--50278309	30	3.2	29	76	15	88	28	0	0	71	0.86
50278104--50278304	94	2.1	93	81	10	223	24	0	1	72	1.02
50278379--50279402	1	1024.0	1	91	0	1652	95	0	0	4	0.26
50279440--50279482	20	2.2	20	88	12	63	20	0	0	79	0.74
50279453--50279500	24	2.0	24	88	8	71	14	0	0	85	0.60
50279452--50279510	31	1.9	30	82	3	73	18	0	0	81	0.69
50279517--50279574	28	2.0	30	83	10	75	43	0	3	53	1.17
50279586--50279617	15	2.1	15	94	0	55	68	0	0	31	0.90
50279561--50279640	40	2.0	41	85	7	110	63	2	1	32	1.15
50279634--50279686	1	53.0	1	78	0	52	88	1	7	1	0.65
50279634--50279686	12	4.4	12	83	9	72	88	1	7	1	0.65
50279634--50279687	23	2.3	23	90	0	81	87	1	9	1	0.71
50280204--50280243	19	2.2	19	86	13	57	10	0	2	87	0.63
50280207--50280239	14	2.3	15	89	5	50	9	0	3	87	0.63
50280328--50280958	1	631.0	1	76	0	236	81	1	14	2	0.83
50280309--50280958	44	14.6	43	71	17	304	81	1	15	2	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50280309--50280958	45	14.5	44	72	15	317	81	1	15	2	0.84
50280328--50280958	36	14.5	41	71	20	266	81	1	14	2	0.83
50280311--50280958	39	16.7	37	70	16	288	81	1	15	2	0.84
50280310--50280562	82	3.1	80	80	13	302	86	0	13	0	0.61
50280330--50280817	76	5.9	81	70	14	307	80	1	18	0	0.79
50281825--50281883	8	7.8	8	81	11	63	86	0	1	11	0.65
50281827--50281892	8	9.0	7	77	14	62	84	0	1	13	0.68
50281837--50281890	27	2.0	28	92	3	92	87	0	0	12	0.56
50281827--50281892	28	2.2	29	86	7	98	84	0	1	13	0.68
50281835--50281883	1	49.0	1	87	0	53	89	0	0	10	0.48
50281985--50282028	23	2.0	22	86	4	61	59	2	2	36	1.23
50282392--50282469	27	2.9	27	75	3	77	73	0	25	1	0.91
50282409--50282458	26	1.9	26	84	8	66	78	0	22	0	0.76
50282409--50282471	33	2.0	29	82	11	72	76	0	23	0	0.79
50283572--50286962	1	3391.0	1	91	0	5369	95	0	0	4	0.29
50292117--50292183	35	1.9	35	93	0	116	25	20	23	29	1.99
50292311--50292395	32	2.8	30	79	13	84	28	12	27	31	1.93
50297113--50297145	15	2.1	16	88	5	50	36	0	3	60	1.12
50300749--50300813	26	2.4	27	85	7	89	33	16	30	18	1.94
50307497--50307560	29	2.2	29	81	8	76	45	14	6	34	1.70
50307687--50307755	36	1.9	36	82	8	88	24	14	15	44	1.84
50308868--50308952	27	3.2	26	73	14	82	29	17	29	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50312372--50312429	29	2.0	30	86	3	82	41	24	3	31	1.71
50312372--50312445	30	2.5	29	80	6	87	43	21	4	31	1.71
50312514--50312582	35	1.9	36	82	8	88	24	11	17	46	1.81
50313624--50313680	28	2.0	28	100	0	114	42	24	0	33	1.55
50313629--50313689	28	2.2	28	90	0	95	45	24	1	27	1.62
50314946--50315066	43	2.8	44	72	16	119	21	22	27	28	1.99
50317435--50317499	25	2.6	25	85	2	87	24	23	7	44	1.79
50317435--50317491	24	2.3	24	87	3	78	26	22	7	43	1.78
50324640--50324675	18	2.0	18	94	0	63	38	13	0	47	1.44
50328501--50328539	18	2.2	17	86	13	53	33	0	20	46	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211