genome.fa.s21.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  207  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64199195--64199265	15	4.6	15	72	16	56	49	1	1	47	1.18
64199544--64199577	2	17.0	2	93	0	59	47	0	2	50	1.16
64200391--64200444	20	2.7	19	80	11	56	64	1	3	29	1.21
64200414--64200503	29	3.1	29	75	10	85	60	2	8	28	1.39
64200489--64200544	21	2.8	20	78	10	60	62	0	10	26	1.28
64200804--64200853	20	2.5	21	87	9	77	44	0	0	56	0.99
64202513--64202560	21	2.2	21	78	14	53	39	0	4	56	1.19
64219684--64219780	31	3.3	30	68	16	85	24	16	15	43	1.87
64225986--64226067	30	2.7	30	84	1	110	35	3	4	56	1.39
64227676--64227709	17	2.0	17	88	0	50	47	5	5	41	1.52
64233486--64233521	14	2.5	15	91	8	58	41	0	0	58	0.98
64243201--64243246	5	9.4	5	93	6	69	36	0	0	63	0.95
64243184--64243263	17	4.8	15	70	20	52	37	0	0	62	0.95
64243212--64243246	5	7.0	5	100	0	70	40	0	0	60	0.97
64244174--64244239	14	4.6	14	74	9	62	51	3	15	30	1.58
64244219--64244253	17	2.1	17	88	0	52	48	0	14	37	1.44
64250422--64250470	24	2.0	24	100	0	98	28	8	16	46	1.75
64261747--64261801	14	4.1	14	75	15	53	65	1	0	32	1.03
64270243--64270271	3	9.7	3	100	0	58	34	0	0	65	0.93
64270814--64270844	16	1.9	16	93	0	53	35	6	3	54	1.42
64283094--64283335	46	5.6	45	68	18	156	32	20	19	28	1.97
64283094--64283422	44	7.6	43	74	10	210	31	21	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64285284--64285318	3	11.7	3	100	0	70	34	0	0	65	0.93
64285862--64285892	16	1.9	16	93	0	53	35	6	3	54	1.42
64292938--64292982	18	2.6	17	82	6	56	55	6	0	37	1.26
64293646--64293753	40	2.7	40	91	0	171	33	19	22	25	1.97
64293922--64293999	40	2.0	40	97	0	147	30	20	20	28	1.98
64293922--64294032	40	2.8	41	87	1	118	30	19	20	28	1.97
64294382--64294424	22	2.0	22	85	0	59	20	0	32	46	1.51
64294387--64294435	14	3.4	14	86	8	64	18	2	32	46	1.60
64294382--64294435	7	7.6	7	77	4	54	20	1	29	48	1.60
64296152--64296226	34	2.1	35	85	4	98	53	4	8	34	1.49
64296303--64296361	29	2.1	28	84	9	75	42	8	13	35	1.75
64296308--64296370	29	2.2	28	78	13	65	47	7	12	31	1.70
64297701--64297769	27	2.6	27	86	4	95	17	39	20	23	1.92
64298064--64298116	26	2.0	27	85	10	74	49	0	1	49	1.12
64299228--64299274	24	2.0	23	84	12	60	51	4	14	29	1.62
64313043--64313127	39	2.3	36	81	6	98	43	14	16	25	1.85
64338959--64339218	104	2.4	107	85	4	348	27	13	14	43	1.83
64338956--64339229	108	2.6	104	76	11	295	27	13	13	45	1.81
64339313--64339508	106	1.8	106	94	2	349	27	11	14	46	1.79
64338800--64339696	356	2.5	354	89	5	1343	27	15	14	43	1.85
64339313--64339585	106	2.6	104	82	4	253	27	11	14	45	1.80
64340105--64340175	14	4.9	14	73	13	63	33	40	1	23	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64340130--64340168	7	5.4	7	81	6	51	33	46	2	17	1.62
64340131--64340240	22	5.1	22	72	6	64	36	40	1	20	1.64
64340187--64340235	15	3.4	15	83	8	57	36	38	2	22	1.66
64340009--64340606	303	2.0	302	86	5	848	41	27	2	28	1.69
64340621--64341522	114	7.9	113	83	4	1067	27	25	21	25	1.99
64340657--64341522	229	3.8	229	87	1	1238	27	25	21	25	1.99
64341846--64341939	39	2.4	40	80	3	102	37	22	20	20	1.95
64341976--64342252	41	6.8	41	87	3	373	20	20	24	34	1.96
64341977--64342252	122	2.3	122	86	6	382	20	21	23	34	1.96
64342813--64342851	21	1.9	21	89	5	62	20	0	41	38	1.53
64342812--64342845	14	2.4	14	90	9	52	17	0	44	38	1.49
64342833--64343078	88	2.8	87	92	1	402	28	1	24	45	1.62
64343064--64343108	7	6.4	7	80	10	56	11	0	48	40	1.39
64343789--64343855	20	3.2	21	73	14	59	44	7	0	47	1.31
64343803--64343857	23	2.5	22	80	8	60	49	7	0	43	1.30
64345295--64345357	33	1.9	33	93	0	108	20	0	14	65	1.27
64346256--64346288	16	2.1	16	100	0	66	51	0	18	30	1.46
64346352--64347208	9	98.8	9	67	21	229	44	14	0	39	1.51
64346356--64346987	34	18.4	34	71	18	420	45	12	0	40	1.48
64346387--64346445	16	4.1	16	71	24	58	47	18	0	33	1.49
64346407--64346460	26	2.1	26	96	0	99	48	14	0	37	1.45
64346433--64346987	65	8.6	65	74	14	433	45	12	0	40	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64346356--64346987	99	6.1	100	77	14	490	45	12	0	40	1.48
64346692--64346723	16	2.0	16	100	0	64	43	25	0	31	1.55
64346593--64346926	114	3.0	114	85	12	478	44	14	0	41	1.49
64346775--64346854	41	2.0	41	82	5	99	42	13	0	43	1.44
64346835--64346887	25	2.0	28	85	10	76	43	13	0	43	1.43
64346982--64347019	7	5.1	7	87	12	58	44	26	0	28	1.54
64346968--64347028	16	3.8	16	87	12	90	44	24	0	31	1.54
64346968--64347132	25	6.6	25	74	14	121	43	18	0	38	1.55
64346968--64347029	23	2.5	24	89	10	99	43	24	0	32	1.54
64347015--64347097	34	2.4	34	82	6	96	40	14	0	44	1.45
64347084--64347203	16	7.9	16	69	19	96	45	17	1	35	1.58
64347078--64347189	25	4.6	25	76	8	104	45	16	1	35	1.59
64352061--64352218	66	2.4	65	82	5	192	40	20	25	13	1.89
64352211--64352263	21	2.5	21	84	0	61	35	18	39	5	1.75
64352624--64352788	43	3.8	43	83	3	181	27	18	27	26	1.98
64352642--64352806	87	1.9	87	85	5	226	27	21	27	23	1.99
64352642--64352809	43	3.9	42	81	3	156	26	21	27	24	1.99
64352730--64352891	85	1.9	85	81	5	193	24	27	24	22	2.00
64356267--64356300	17	2.0	17	94	0	59	20	5	2	70	1.21
64361833--64361866	9	3.7	9	88	4	50	23	0	2	73	0.97
64363850--64363888	6	6.5	6	100	0	78	35	0	0	64	0.94
64363855--64363895	18	2.3	18	91	0	64	39	0	0	60	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64365916--64365974	31	1.9	31	89	0	91	40	15	3	40	1.64
64368931--64369114	93	2.0	90	86	5	253	36	12	16	34	1.87
64370972--64370998	14	1.9	14	100	0	54	33	7	29	29	1.85
64373605--64374139	272	2.0	267	89	3	822	30	8	20	40	1.82
64379459--64379516	29	2.0	29	83	10	73	63	5	1	29	1.25
64379970--64380022	22	2.5	22	84	3	63	41	1	0	56	1.10
64388340--64388385	22	2.1	22	83	0	56	54	6	8	30	1.56
64398952--64398993	3	14.0	3	100	0	84	0	33	0	66	0.92
64403565--64403636	31	2.3	31	83	4	92	47	5	20	26	1.72
64408477--64408535	12	4.8	12	78	10	66	50	35	0	13	1.42
64408477--64408546	8	8.6	8	73	14	63	51	34	1	12	1.49
64408488--64408552	20	3.2	20	80	8	69	52	35	1	10	1.46
64410957--64410998	17	2.5	16	81	11	57	19	4	2	73	1.12
64411007--64411043	19	1.9	19	88	0	56	35	0	0	64	0.94
64423855--64423937	29	2.8	31	75	10	93	33	8	1	56	1.37
64433238--64433295	31	1.9	31	86	10	84	44	10	17	27	1.81
64434127--64434185	21	2.9	21	73	19	61	54	0	3	42	1.17
64437747--64437792	25	1.9	24	86	8	67	56	6	4	32	1.45
64443809--64443880	10	6.8	10	73	21	58	29	1	2	66	1.14
64443849--64443884	18	2.0	18	89	10	56	36	0	0	63	0.94
64445284--64445315	3	10.7	3	100	0	64	31	0	0	68	0.90
64445749--64445800	3	17.7	3	76	11	54	28	1	1	67	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64445805--64445855	24	2.0	25	85	7	68	37	13	5	43	1.69
64447589--64447664	28	2.6	29	70	12	75	35	10	15	38	1.82
64451185--64451216	15	2.1	15	94	0	55	9	18	59	12	1.59
64454525--64454582	31	1.9	31	82	6	75	44	5	15	34	1.69
64459375--64459417	21	1.9	23	86	13	63	39	2	11	46	1.53
64473305--64473351	23	2.0	23	84	8	60	57	0	4	38	1.18
64475950--64475989	20	2.0	20	90	4	64	52	15	20	12	1.74
64476224--64476281	29	2.0	29	89	0	89	36	6	12	44	1.68
64476912--64476956	22	2.1	21	87	4	63	48	2	2	46	1.26
64481995--64482042	23	2.1	23	84	7	62	62	0	2	35	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211