genome.fa.s21.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  181  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56098080--56098253	68	2.6	68	88	1	206	28	25	16	29	1.97
56103735--56103896	27	6.0	26	80	9	166	46	22	14	15	1.82
56103735--56103896	54	3.0	53	86	5	218	46	22	14	15	1.82
56104225--56104307	28	3.0	28	90	0	130	24	21	22	31	1.98
56106749--56106869	9	14.3	9	78	13	132	33	0	19	46	1.56
56106753--56106869	25	4.7	25	91	0	180	34	0	19	45	1.57
56106749--56107071	50	6.4	50	71	18	222	33	3	18	44	1.67
56106749--56106869	16	7.2	17	76	16	110	33	0	19	46	1.56
56106945--56107001	25	2.3	25	90	0	87	36	0	15	47	1.46
56106969--56107067	16	6.1	16	78	11	103	32	1	20	46	1.57
56106941--56107042	41	2.5	41	90	1	152	35	0	18	46	1.50
56106656--56107071	196	2.1	199	89	7	634	33	5	17	43	1.72
56106986--56107071	25	3.4	25	95	0	145	30	1	22	46	1.59
56106949--56107067	41	2.9	40	85	7	141	33	0	20	45	1.57
56107123--56107171	24	2.0	24	84	0	62	28	2	20	48	1.60
56107379--56107435	9	6.7	9	76	9	57	43	1	12	42	1.52
56107354--56107412	16	3.9	16	73	13	61	38	0	11	49	1.40
56108970--56109028	6	9.3	6	85	14	75	67	13	3	15	1.35
56108970--56109032	13	4.9	13	84	7	85	68	12	3	15	1.33
56121419--56121456	18	2.1	18	85	9	51	15	15	7	60	1.57
56121451--56121573	12	9.8	12	69	11	68	26	15	8	50	1.71
56121522--56121568	25	1.9	24	86	4	67	29	14	6	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56125385--56125562	47	3.8	47	95	3	315	26	21	9	42	1.83
56125385--56125562	93	1.9	94	94	3	315	26	21	9	42	1.83
56127286--56127330	22	2.0	22	82	4	54	35	24	6	33	1.82
56129038--56129088	6	8.3	6	81	14	52	19	3	0	76	0.94
56129030--56129070	19	2.2	19	86	8	57	19	7	0	73	1.07
56130446--56130483	18	2.1	18	85	9	51	15	15	7	60	1.57
56130471--56130534	13	4.7	13	77	9	65	25	12	7	54	1.64
56130478--56130601	12	9.8	12	68	13	61	26	15	8	50	1.72
56130478--56130597	25	4.8	24	75	11	73	25	15	8	50	1.71
56132507--56132706	39	5.1	39	85	2	224	34	29	18	18	1.95
56138902--56139042	24	5.9	24	89	0	165	14	21	41	21	1.89
56138920--56139042	12	10.2	12	90	0	165	15	21	43	20	1.88
56138902--56139042	36	3.9	36	89	0	174	14	21	41	21	1.89
56140901--56140964	29	2.2	28	75	8	67	25	9	17	48	1.76
56141170--56141246	22	3.6	21	87	5	109	32	27	0	40	1.57
56141219--56141276	30	1.9	30	92	0	98	32	32	0	34	1.58
56141196--56141298	52	2.0	51	84	5	136	33	31	0	34	1.58
56141247--56141289	22	2.0	22	90	0	68	37	30	0	32	1.58
56141486--56141519	15	2.3	15	90	5	52	26	0	5	67	1.13
56143658--56144017	28	13.5	28	83	13	447	46	23	2	27	1.65
56143672--56144017	23	13.2	23	79	19	253	46	23	2	27	1.65
56143658--56144017	51	6.8	50	75	22	287	46	23	2	27	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56143749--56144017	79	3.4	79	88	7	406	47	23	2	27	1.63
56145724--56145989	124	2.1	124	86	4	376	32	23	15	28	1.95
56149986--56150047	30	2.1	30	84	6	81	43	4	3	48	1.40
56151289--56151347	21	2.8	21	84	0	82	38	5	18	37	1.73
56151330--56151375	18	2.6	18	86	10	67	32	8	21	36	1.84
56151496--56151631	69	2.0	69	86	0	191	20	14	37	27	1.92
56151607--56151651	18	2.5	18	82	7	56	17	13	42	26	1.86
56177497--56177577	40	2.0	40	100	0	162	19	22	24	33	1.97
56180734--56181077	102	3.4	101	85	2	433	29	14	25	30	1.94
56180738--56181073	51	6.6	50	79	5	311	30	13	25	31	1.94
56183436--56183526	25	3.6	25	76	5	94	16	28	17	37	1.92
56183505--56183584	25	3.2	25	67	10	65	18	27	23	30	1.98
56185123--56185260	41	3.4	41	86	2	188	31	13	21	33	1.92
56187316--56187515	100	2.0	100	99	0	391	31	17	17	34	1.93
56193240--56193331	25	3.7	25	85	2	105	18	29	19	32	1.96
56203100--56203137	19	2.0	19	94	0	67	26	2	21	50	1.62
56204154--56204184	15	2.1	15	100	0	62	38	6	32	22	1.80
56206465--56206644	95	1.9	95	94	0	315	42	12	15	29	1.84
56211414--56211474	21	2.9	21	67	0	50	37	18	6	37	1.76
56211709--56211798	40	2.2	40	98	0	171	23	45	14	16	1.84
56214927--56214978	8	6.5	8	100	0	104	34	0	0	65	0.93
56222198--56222231	17	1.9	18	88	5	52	41	8	8	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56222422--56222462	16	2.6	16	96	0	73	19	26	39	14	1.90
56222893--56222933	18	2.3	18	100	0	82	26	9	17	46	1.79
56223732--56223797	2	33.0	2	96	0	123	48	50	0	1	1.10
56224632--56224704	38	1.9	37	86	8	103	31	21	1	45	1.61
56224692--56224735	23	1.9	22	82	17	54	38	22	0	38	1.55
56224833--56224886	23	2.3	23	90	0	90	35	24	20	20	1.96
56225335--56225393	30	2.0	30	86	0	82	28	25	8	37	1.85
56235418--56235455	19	2.1	18	85	14	51	50	0	5	44	1.24
56240422--56240491	16	4.4	16	88	0	104	32	1	35	30	1.67
56240422--56240491	32	2.2	32	94	0	122	32	1	35	30	1.67
56240705--56240745	16	2.6	16	84	11	57	53	0	0	46	1.00
56240705--56240755	15	3.5	15	84	10	61	52	0	0	47	1.00
56240711--56240926	120	1.8	120	97	0	414	48	6	1	43	1.37
56240824--56240875	15	3.6	15	80	12	56	53	1	0	44	1.11
56240741--56240927	59	3.1	58	69	20	177	48	7	1	42	1.41
56242242--56242269	11	2.5	11	100	0	56	53	35	10	0	1.36
56252723--56252768	16	2.8	17	83	6	51	67	10	0	21	1.21
56253300--56253336	19	2.0	18	94	0	56	37	10	18	32	1.86
56253466--56253553	28	3.3	27	71	12	83	61	6	20	11	1.52
56254016--56254058	22	1.9	23	86	13	63	30	2	4	62	1.28
56254403--56254444	12	3.2	13	83	13	50	26	0	4	69	1.08
56259700--56259790	41	2.2	41	92	0	146	27	18	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56261739--56261772	6	5.8	6	93	6	61	85	0	14	0	0.60
56261739--56261772	17	1.9	17	94	5	59	85	0	14	0	0.60
56262980--56263619	44	14.5	44	76	6	544	27	15	26	30	1.96
56262980--56263619	132	4.8	133	89	1	803	27	15	26	30	1.96
56263721--56264087	132	2.8	132	87	1	504	30	18	22	28	1.97
56264334--56264408	19	3.8	19	86	6	105	38	9	16	36	1.80
56264335--56264397	21	3.1	21	93	4	103	39	9	14	36	1.78
56264347--56264431	21	4.0	22	77	14	72	38	7	16	37	1.76
56264387--56264445	23	2.7	23	82	7	70	37	3	16	42	1.66
56265013--56265055	22	1.9	23	86	13	63	30	2	4	62	1.28
56264949--56265060	22	5.3	21	66	24	58	32	3	6	58	1.40
56266960--56267018	19	3.0	20	78	9	59	66	5	5	23	1.32
56267842--56267897	13	4.5	13	82	13	82	48	14	0	37	1.44
56268208--56268255	16	2.9	16	84	6	51	54	0	4	41	1.20
56270060--56270109	19	2.7	18	93	6	82	66	0	0	34	0.92
56270058--56270109	3	17.7	3	88	11	81	65	0	0	34	0.93
56270688--56270735	21	2.3	21	82	7	62	75	0	10	14	1.06
56271772--56272659	44	20.2	44	64	14	226	28	22	18	30	1.98
56271703--56272747	132	7.9	132	90	0	1603	27	23	18	30	1.98
56272343--56272819	88	5.4	89	70	12	232	27	23	19	29	1.98
56272363--56272555	43	4.4	43	67	15	117	27	22	18	31	1.97
56271732--56272747	527	1.9	528	91	1	1671	28	23	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56272653--56272823	88	1.9	88	98	0	333	26	25	19	28	1.99
56272835--56272975	44	3.2	44	76	4	149	29	24	17	29	1.97
56272851--56272983	44	3.0	43	78	10	160	28	24	15	30	1.96
56273864--56273888	13	1.9	13	100	0	50	56	0	24	20	1.43
56275226--56275267	18	2.3	18	88	8	59	59	4	21	14	1.53
56277199--56277223	13	1.9	13	100	0	50	48	12	8	32	1.69
56279819--56279857	19	2.0	20	90	5	62	79	0	7	12	0.93
56293729--56293822	48	2.0	48	91	0	152	37	10	8	43	1.70
56294663--56294712	25	2.0	25	100	0	100	12	12	0	76	1.04
56296160--56296227	24	2.8	24	71	13	66	25	23	23	27	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211