genome.fa.s21.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  147  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46367970--46368168	20	9.9	20	72	18	103	62	4	2	31	1.26
46368280--46368313	17	2.0	17	94	0	59	32	0	0	67	0.91
46368593--46368635	20	2.2	19	84	8	59	34	6	0	58	1.25
46368600--46368643	20	2.2	20	95	0	79	31	6	0	61	1.22
46368721--46368761	20	2.0	20	86	9	57	34	2	4	58	1.32
46368759--46368814	16	3.3	17	78	12	53	30	0	1	67	1.01
46368765--46368811	23	2.1	22	84	4	58	29	0	2	68	1.02
46368984--46369030	23	1.9	26	83	12	64	25	8	2	63	1.34
46370512--46370594	25	3.4	25	77	8	89	30	21	28	19	1.98
46373114--46373164	25	2.0	25	92	0	84	35	15	7	41	1.76
46373548--46373623	23	3.5	22	74	16	68	36	25	22	15	1.93
46373573--46373623	23	2.1	24	89	7	77	35	27	23	13	1.93
46373605--46373656	23	2.3	23	86	0	77	36	19	19	25	1.95
46374923--46374970	24	2.0	24	83	4	60	47	2	6	43	1.40
46374942--46374985	23	1.9	23	85	0	61	45	6	4	43	1.51
46376675--46376873	50	3.9	52	76	10	160	26	20	29	24	1.99
46377126--46377164	20	2.0	20	90	10	62	56	5	23	15	1.59
46378089--46378380	128	2.3	129	90	1	451	29	32	16	20	1.95
46378089--46378380	43	6.8	43	90	1	415	29	32	16	20	1.95
46378436--46378465	5	6.0	5	100	0	60	40	0	0	60	0.97
46378784--46378859	37	2.1	37	100	0	152	43	13	18	25	1.86
46379140--46379191	23	2.3	23	79	0	59	34	7	30	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46379643--46379672	12	2.5	12	100	0	60	50	10	6	33	1.62
46382865--46382909	21	2.2	20	88	4	63	26	2	46	24	1.64
46382916--46383279	143	2.5	143	89	2	536	34	10	14	40	1.80
46383170--46383394	114	2.0	115	81	11	266	37	11	14	37	1.81
46384309--46384358	21	2.4	20	80	9	64	36	40	0	24	1.55
46384397--46384483	40	2.2	40	81	8	106	37	36	2	22	1.67
46385462--46385580	41	2.9	41	88	0	184	28	26	21	22	1.99
46390329--46390390	25	2.5	25	89	0	88	30	22	24	22	1.99
46390346--46390402	25	2.3	25	84	0	78	29	24	24	21	1.99
46390961--46391001	21	2.0	21	85	0	55	43	19	2	34	1.64
46395713--46395748	19	1.9	19	88	5	56	61	0	2	36	1.11
46397697--46397793	3	32.7	3	95	2	178	1	31	0	67	0.98
46398084--46398137	27	2.0	27	88	0	81	40	20	9	29	1.83
46398269--46398309	21	2.0	21	90	9	66	34	29	14	21	1.93
46401101--46401176	38	2.0	38	100	0	152	42	13	10	34	1.78
46402310--46402381	31	2.3	32	86	9	96	40	1	0	58	1.07
46403867--46403891	4	6.2	4	100	0	50	76	0	0	24	0.80
46403893--46403926	2	16.5	2	93	6	59	50	2	0	47	1.16
46404230--46404289	21	2.8	21	82	7	59	40	3	1	55	1.27
46405262--46405315	23	2.3	23	81	6	65	40	14	11	33	1.82
46405449--46405501	20	2.7	20	88	11	74	58	9	0	32	1.30
46405449--46405506	19	3.1	19	87	9	75	56	8	0	34	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46405510--46405585	9	8.1	9	74	12	64	55	1	2	40	1.22
46418547--46418724	27	6.6	27	84	3	205	29	28	15	26	1.96
46418568--46418723	82	1.9	81	88	3	233	29	28	15	26	1.96
46424849--46424894	23	2.0	24	87	12	69	13	8	4	73	1.21
46427739--46427766	5	5.6	5	100	0	56	17	0	17	64	1.30
46429794--46429954	43	3.8	43	78	6	184	20	18	26	35	1.95
46429793--46429991	85	2.4	84	89	0	317	21	17	25	35	1.95
46432769--46432863	50	1.9	50	87	8	140	21	15	29	33	1.94
46432905--46434206	88	14.8	88	83	2	1488	21	25	25	26	2.00
46432905--46434206	264	4.9	263	86	3	1690	21	25	25	26	2.00
46435911--46435935	10	2.5	10	100	0	50	32	12	28	28	1.92
46436462--46436487	13	2.0	13	100	0	52	0	15	0	84	0.62
46441416--46441545	3	43.3	3	69	14	63	61	3	5	29	1.36
46442167--46442207	16	2.6	16	88	7	57	80	7	12	0	0.90
46445870--46446016	43	3.5	40	82	7	177	23	15	27	34	1.95
46448662--46448887	40	5.7	40	90	4	298	25	21	26	26	2.00
46448662--46448920	120	2.2	120	81	7	287	25	21	27	25	1.99
46457577--46457671	48	2.0	48	89	0	145	21	14	20	44	1.87
46462394--46462465	36	2.0	35	89	7	110	33	8	26	31	1.86
46462763--46462857	48	2.0	48	91	0	154	18	15	22	43	1.88
46471070--46471138	20	3.3	20	67	25	61	31	5	15	46	1.70
46474900--46474943	22	2.0	23	86	4	63	27	9	2	61	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46475499--46475590	39	2.4	39	90	0	148	25	25	19	30	1.98
46484104--46484128	5	5.0	5	100	0	50	20	60	20	0	1.37
46494376--46494415	19	2.1	19	100	0	80	30	15	10	45	1.78
46498011--46498048	10	4.0	10	93	6	62	42	36	0	21	1.53
46498011--46498048	19	2.0	19	90	10	60	42	36	0	21	1.53
46498800--46499040	31	7.8	32	75	9	196	41	16	13	28	1.86
46498797--46499027	62	3.8	61	84	2	311	40	16	14	28	1.88
46503886--46504450	125	4.5	125	83	2	704	29	16	22	30	1.96
46503889--46504449	251	2.2	250	90	0	861	29	17	22	30	1.96
46504799--46504858	29	2.1	29	100	0	120	18	16	41	23	1.90
46507658--46508051	22	17.9	21	74	10	261	19	0	30	49	1.54
46507692--46507767	7	10.4	7	71	18	57	17	0	31	51	1.45
46507667--46507730	29	2.2	29	88	2	94	21	0	32	45	1.52
46507667--46507767	15	6.9	15	72	12	70	19	0	32	47	1.50
46507695--46508051	43	8.2	43	82	6	393	18	0	31	49	1.52
46507834--46507940	15	7.3	15	67	13	62	14	0	30	54	1.41
46507864--46507925	29	2.1	29	84	0	79	17	0	27	54	1.43
46508631--46508669	18	2.2	18	90	0	60	41	7	30	20	1.80
46510573--46510616	11	3.8	12	80	19	58	43	0	31	25	1.55
46518699--46518895	98	2.0	98	93	0	340	37	23	10	28	1.88
46522018--46522052	18	2.1	17	89	10	54	65	0	11	22	1.24
46526852--46526976	33	3.8	33	75	7	112	27	13	42	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46528137--46528163	3	9.0	3	100	0	54	33	0	0	66	0.92
46528209--46528248	21	1.9	21	84	0	53	37	2	5	55	1.35
46532358--46532404	22	2.2	21	88	3	67	10	19	6	63	1.47
46533350--46533380	14	2.3	13	94	5	53	70	0	16	12	1.16
46533349--46533389	21	2.0	21	90	4	66	65	0	19	14	1.26
46534805--46534977	44	4.0	44	62	20	101	26	18	25	29	1.98
46534697--46535099	132	3.1	132	89	1	621	28	18	24	28	1.98
46535129--46535409	44	6.3	44	79	2	233	33	15	24	27	1.95
46535082--46535336	134	1.9	134	86	0	366	32	16	23	27	1.96
46536318--46536354	17	2.1	18	90	10	58	5	51	18	24	1.67
46537238--46537267	3	10.0	3	100	0	60	33	0	0	66	0.92
46537313--46537352	21	1.9	21	84	0	53	35	2	5	57	1.34
46540635--46541030	104	3.8	105	79	10	424	53	16	0	29	1.49
46540581--46541030	109	4.3	103	80	9	490	54	17	0	28	1.48
46541334--46541376	9	4.9	8	79	20	50	0	32	0	67	0.91
46541334--46541376	19	2.4	19	88	7	63	0	32	0	67	0.91
46541692--46541738	23	2.0	23	87	0	67	59	0	2	38	1.09
46544448--46544532	39	2.3	37	85	6	109	27	14	17	41	1.88
46545298--46545337	20	2.0	20	90	0	62	50	10	10	30	1.69
46545286--46545351	35	1.9	34	84	6	89	46	10	7	34	1.67
46547736--46547799	13	4.9	13	78	14	69	39	26	4	29	1.76
46553379--46553620	50	4.7	51	77	6	206	25	27	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46564106--46564204	38	2.6	38	81	9	121	50	8	4	37	1.51
46567337--46567376	11	3.5	11	93	3	62	22	22	0	55	1.44
46567360--46567457	51	1.9	51	85	8	137	26	26	0	46	1.53
46567456--46567499	20	2.1	21	87	4	63	38	0	2	59	1.10
46567465--46567501	19	1.9	19	88	0	56	43	0	2	54	1.14
46569263--46569305	18	2.4	18	88	0	59	23	25	6	44	1.78
46569561--46569607	21	2.2	21	88	0	67	29	44	23	2	1.65
46569881--46570126	126	2.0	126	92	3	415	29	21	16	32	1.95
46570936--46570995	26	2.5	22	71	19	57	51	3	5	40	1.40
46571147--46571177	15	2.1	15	93	0	53	25	6	0	67	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211