genome.fa.s21.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  66  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20108014--20108055	15	2.7	16	82	14	52	52	2	0	45	1.13
20108023--20108064	15	2.9	15	82	10	52	52	0	0	47	1.00
20108012--20108311	122	2.5	121	91	5	473	49	4	2	43	1.37
20108135--20108186	15	3.6	15	80	12	56	53	1	0	44	1.11
20108049--20108238	61	3.1	61	67	19	178	47	6	2	43	1.40
20108352--20108399	26	1.9	25	84	16	64	52	2	0	45	1.12
20111953--20112123	25	7.1	25	77	15	198	35	8	6	50	1.58
20111958--20112128	23	7.1	23	76	15	177	33	8	7	50	1.61
20111941--20112128	48	3.9	48	99	0	367	35	7	6	50	1.58
20115123--20115202	42	1.9	42	94	0	142	46	8	22	22	1.79
20119640--20119726	23	4.0	23	70	11	92	44	6	26	21	1.77
20119656--20119739	42	2.0	42	95	0	150	45	8	22	23	1.79
20124402--20124428	6	4.5	6	100	0	54	14	0	29	55	1.40
20125108--20125160	27	2.0	27	82	14	65	35	1	9	52	1.45
20125723--20126892	587	2.0	587	100	0	2340	33	17	14	34	1.90
20128915--20129662	153	5.2	144	79	11	677	41	4	9	43	1.58
20130632--20130725	31	3.0	29	73	16	82	39	3	10	46	1.54
20131673--20131709	18	2.0	19	89	5	58	48	13	0	37	1.43
20142834--20142929	50	1.9	51	85	6	133	18	20	34	26	1.96
20151388--20151428	3	13.7	3	94	0	73	34	36	0	29	1.58
20153382--20153407	7	3.7	7	100	0	52	0	15	0	84	0.62
20166771--20166813	18	2.4	18	96	0	77	51	0	2	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20178202--20178361	78	2.1	78	91	0	257	30	16	21	31	1.95
20183172--20183225	24	2.4	22	87	6	72	46	0	1	51	1.11
20183227--20183278	24	2.3	22	83	6	59	51	1	0	46	1.12
20186081--20186366	142	2.0	142	100	0	572	47	17	17	18	1.83
20205466--20205536	21	3.4	21	82	3	81	21	0	35	43	1.53
20205519--20205567	7	6.9	7	76	4	53	20	0	46	32	1.51
20205517--20205582	15	4.5	15	81	11	59	21	0	43	34	1.53
20206172--20206889	107	6.3	106	71	18	353	47	11	11	28	1.75
20206557--20206758	104	1.9	105	85	4	282	49	10	11	29	1.72
20206468--20206878	224	1.8	224	86	4	596	48	10	10	29	1.73
20208086--20208111	13	2.0	13	100	0	52	53	15	0	30	1.42
20210215--20210299	43	2.0	43	88	0	125	35	7	10	47	1.66
20210563--20210831	43	6.3	43	85	1	315	26	15	28	28	1.96
20210563--20210833	129	2.1	128	84	5	350	26	15	28	28	1.96
20222671--20222798	64	2.0	64	100	0	256	37	10	17	34	1.85
20222954--20223155	27	7.5	27	81	5	203	42	19	19	18	1.90
20222955--20223156	54	3.8	53	85	6	255	42	19	19	18	1.89
20231177--20231238	33	2.0	32	84	9	83	6	37	0	56	1.25
20231415--20231478	27	2.4	27	89	0	101	42	21	20	15	1.89
20231650--20231778	52	2.5	52	90	0	204	19	23	20	37	1.94
20231650--20231782	26	5.1	26	77	2	151	20	22	20	36	1.95
20239756--20239799	22	2.0	22	95	0	79	29	22	9	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20243549--20243733	29	6.4	29	72	12	130	36	10	25	26	1.89
20253901--20253945	23	2.0	23	90	0	72	31	17	22	28	1.97
20274496--20274532	16	2.3	16	95	0	65	43	13	18	24	1.86
20295099--20295529	47	9.1	49	90	4	631	32	8	30	29	1.87
20295101--20295529	191	2.3	190	91	4	672	31	8	30	28	1.88
20295647--20295724	37	2.1	37	85	2	104	25	17	30	25	1.97
20302065--20302094	15	1.9	16	93	6	53	46	13	0	40	1.43
20306013--20306373	46	7.9	47	84	11	493	31	9	29	29	1.89
20306015--20306377	94	4.0	94	85	10	461	30	9	29	30	1.88
20306014--20306423	94	4.5	96	81	12	440	30	9	30	29	1.89
20306541--20306620	38	2.1	38	88	2	117	23	18	31	26	1.98
20312897--20313282	47	8.1	47	90	3	567	32	9	30	28	1.88
20312897--20313282	96	4.0	94	91	4	585	32	9	30	28	1.88
20312897--20313282	192	2.0	190	92	2	648	32	9	30	28	1.88
20313401--20313479	37	2.1	37	90	0	122	24	18	31	25	1.98
20319474--20319518	17	2.6	17	85	3	54	42	2	0	55	1.12
20329380--20329508	48	2.7	48	82	0	159	28	22	25	23	1.99
20333117--20333146	14	2.1	14	93	0	51	40	0	43	16	1.48
20343480--20343504	13	1.9	13	100	0	50	24	0	16	60	1.36
20343602--20343702	29	3.5	28	76	9	96	39	7	28	23	1.83
20343602--20343714	29	3.9	29	73	9	95	38	10	26	24	1.88
20347632--20347657	2	13.0	2	100	0	52	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20350088--20350117	3	10.0	3	100	0	60	33	0	0	66	0.92
20350567--20350598	6	5.3	6	96	0	55	43	0	0	56	0.99
20351214--20351253	9	3.9	10	87	12	55	40	0	0	60	0.97
20352178--20352225	19	2.4	20	86	6	62	62	2	2	33	1.18
20352543--20352588	16	2.8	17	80	12	60	58	0	2	39	1.10
20366588--20366626	20	2.0	20	90	10	62	15	23	5	56	1.59
20366829--20367013	49	3.8	48	72	11	142	23	25	23	27	2.00
20369205--20369303	28	3.6	27	81	9	110	31	13	28	27	1.94
20371470--20371650	91	2.0	91	95	0	326	22	15	22	40	1.91
20372505--20372536	12	2.7	12	95	0	55	28	9	21	40	1.84
20373422--20373541	40	3.0	39	93	4	204	64	0	10	25	1.26
20378087--20378185	25	4.0	25	84	2	92	24	23	20	32	1.98
20378099--20378184	25	3.4	25	86	0	100	25	24	20	29	1.99
20378137--20378213	25	3.2	22	82	10	73	28	25	20	24	1.99
20382837--20382894	23	2.8	20	75	17	55	75	3	17	3	1.07
20383577--20383623	24	2.0	24	84	16	62	31	0	17	51	1.46
20383600--20383647	21	2.3	21	82	13	64	35	0	12	52	1.40
20383780--20383919	40	3.5	40	78	6	133	27	20	23	28	1.99
20387134--20387186	22	2.5	22	84	9	65	60	3	1	33	1.26
20387163--20387192	15	1.9	16	93	6	53	63	0	0	36	0.95
20387350--20387392	2	20.5	2	82	17	52	46	2	4	46	1.36
20398749--20398819	24	3.0	24	89	4	81	28	23	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20398762--20398819	24	2.4	24	94	0	98	27	24	20	27	1.99
20406329--20406441	43	2.7	43	80	6	115	24	19	26	29	1.98
20417038--20417106	20	3.4	19	75	13	59	30	1	2	65	1.16
20417024--20417116	41	2.2	41	79	11	109	29	1	4	65	1.18
20421935--20421976	22	2.0	20	86	9	57	52	9	4	33	1.55
20421942--20421988	22	2.2	22	84	3	60	55	8	4	31	1.49
20422380--20422426	23	2.1	23	96	4	87	27	10	12	48	1.74
20430837--20430896	24	2.5	24	81	8	68	28	18	16	36	1.93
20430837--20430923	25	3.5	25	76	13	72	28	19	18	33	1.95
20430831--20430941	49	2.3	49	79	6	118	27	20	18	33	1.96
20431715--20431980	135	2.0	135	94	0	469	24	13	23	38	1.91
20441288--20441343	20	2.8	20	75	0	58	78	8	3	8	1.07
20441307--20441362	20	2.8	21	75	8	62	75	8	5	10	1.19
20441788--20441825	7	5.6	7	90	6	60	68	0	18	13	1.21
20441797--20441825	13	2.2	13	100	0	58	72	0	13	13	1.13
20443019--20443500	87	5.5	87	94	0	829	29	22	23	24	1.99
20443031--20443254	45	5.2	42	63	19	120	29	25	21	23	1.99
20443548--20443843	44	6.8	43	71	9	172	29	17	23	30	1.97
20443689--20443786	45	2.2	44	83	1	124	27	21	23	27	1.99
20449232--20449258	14	1.9	14	100	0	54	33	0	22	44	1.53
20453962--20454110	72	2.1	72	86	7	205	24	4	13	57	1.55
20456161--20456237	13	5.9	13	75	6	75	38	18	7	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20456164--20456237	26	2.8	26	80	8	87	40	18	8	32	1.80
20459714--20459749	17	2.1	17	94	0	63	22	19	5	52	1.66
20462145--20462222	38	2.1	38	100	0	156	30	16	23	29	1.96
20467976--20468013	20	1.9	20	100	0	76	55	0	23	21	1.44
20467981--20468030	25	2.0	25	88	0	73	54	0	26	20	1.45
20474515--20474623	44	2.5	44	78	3	121	30	17	21	31	1.96
20474967--20476001	133	7.8	133	92	0	1615	29	24	15	29	1.96
20507722--20507869	70	2.1	70	89	0	224	29	29	14	26	1.95
20511150--20511198	19	2.7	18	79	17	57	16	0	12	71	1.14
20515160--20515208	24	2.0	26	84	15	68	59	10	0	30	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211