genome.fa.s21.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  158  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49625925--49625978	27	2.0	27	96	0	99	24	0	35	40	1.55
49628331--49628399	27	2.6	26	84	6	93	69	1	0	28	0.97
49628379--49628407	7	4.1	7	100	0	58	68	0	0	31	0.89
49628804--49628903	51	2.0	51	86	4	139	46	3	25	26	1.67
49628881--49628938	11	5.2	11	85	2	71	44	1	31	22	1.63
49639945--49639974	3	10.0	3	100	0	60	66	33	0	0	0.92
49640350--49640384	6	5.8	6	96	0	61	51	11	0	37	1.38
49640782--49640820	16	2.5	15	87	4	51	0	15	2	82	0.79
49643461--49643498	7	5.3	7	93	6	67	86	0	13	0	0.56
49644292--49644328	18	2.1	19	90	10	60	67	5	8	18	1.36
49647132--49647196	3	21.7	3	96	0	121	69	0	30	0	0.89
49654370--49654431	22	2.8	22	85	0	79	19	25	16	38	1.92
49658018--49658071	28	1.9	28	88	0	81	29	24	27	18	1.98
49658289--49658523	32	7.4	32	75	3	188	38	20	20	20	1.93
49658289--49658526	64	3.7	64	77	3	230	38	20	20	20	1.93
49658340--49658520	96	1.9	96	82	4	231	38	22	19	19	1.94
49658526--49658593	26	2.6	26	95	0	127	35	25	25	14	1.94
49658593--49658656	27	2.4	27	85	12	80	31	23	25	20	1.98
49658760--49658806	23	2.0	23	87	0	67	53	25	4	17	1.62
49659998--49660052	21	2.6	21	79	0	56	30	29	23	16	1.96
49660604--49660661	28	2.0	29	86	3	82	41	13	8	36	1.76
49660883--49661107	71	3.2	70	76	7	229	32	20	21	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49676521--49676708	40	4.7	40	88	2	270	35	17	29	17	1.93
49676527--49676708	20	9.1	20	64	10	84	33	17	30	18	1.94
49680938--49680982	23	2.0	23	100	0	90	8	17	26	46	1.78
49680938--49680990	23	2.3	23	90	6	81	9	18	26	45	1.80
49694047--49694073	3	9.0	3	100	0	54	0	66	0	33	0.92
49696964--49696995	16	2.0	17	88	11	50	34	0	0	65	0.93
49697430--49697483	22	2.5	21	85	8	65	25	0	5	68	1.11
49697987--49698035	22	2.2	22	85	7	64	67	2	0	30	1.02
49698309--49698342	17	2.0	17	88	0	50	38	2	0	58	1.13
49698286--49698407	41	3.0	40	72	21	119	38	4	2	54	1.33
49701586--49701632	19	2.5	18	89	3	67	29	10	8	51	1.66
49703953--49704005	25	2.1	25	89	0	79	39	24	18	16	1.91
49703978--49704176	41	4.9	41	81	4	222	33	25	22	18	1.96
49707968--49708649	339	2.0	339	100	0	1364	32	20	8	38	1.83
49709102--49709128	2	13.5	2	100	0	54	0	48	0	51	1.00
49715069--49715093	13	1.9	13	100	0	50	32	0	0	68	0.90
49715168--49715210	20	2.0	22	86	8	63	58	0	2	39	1.11
49715686--49715731	19	2.3	20	92	3	76	65	0	0	34	0.93
49715789--49715814	13	2.0	13	100	0	52	30	0	7	61	1.24
49715778--49716058	105	2.6	105	75	13	279	35	7	7	49	1.57
49716492--49716544	21	2.6	20	75	13	54	37	1	0	60	1.08
49723160--49723209	20	2.5	20	90	0	82	44	10	18	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49725236--49725270	18	2.0	18	88	5	54	34	0	0	65	0.93
49740447--49740575	50	2.6	50	79	0	141	24	23	30	22	1.99
49742609--49742688	34	2.4	34	93	4	137	65	2	15	17	1.39
49747630--49747808	76	2.4	76	87	0	250	30	19	21	27	1.98
49747656--49747800	40	3.7	40	72	9	129	31	21	22	25	1.98
49750773--49750862	41	2.1	43	86	8	123	42	13	18	25	1.87
49754776--49754809	17	2.0	17	100	0	68	11	23	23	41	1.87
49773944--49773996	23	2.4	22	76	20	56	9	18	1	69	1.25
49788378--49788428	18	2.9	17	82	5	66	19	5	1	72	1.15
49788378--49788427	6	8.3	6	81	0	55	18	6	2	74	1.12
49790878--49790983	41	2.6	41	89	0	158	34	21	22	20	1.96
49790880--49790998	41	2.9	40	86	5	157	35	20	21	23	1.96
49791131--49791173	17	2.6	17	85	3	61	4	27	4	62	1.35
49791197--49791225	15	1.9	15	100	0	58	27	34	3	34	1.74
49791959--49792006	25	1.9	25	100	0	96	33	8	0	58	1.28
49794110--49794153	19	2.3	18	81	11	52	29	0	4	65	1.12
49794111--49794148	19	2.0	20	89	5	60	26	0	5	68	1.11
49794362--49794418	19	2.8	19	80	17	62	52	1	1	43	1.21
49794362--49794427	19	3.2	20	79	18	57	51	1	3	43	1.26
49794450--49794500	25	2.0	26	88	3	77	52	5	1	39	1.37
49794777--49794933	43	3.7	43	77	5	124	29	28	15	26	1.96
49795031--49795064	16	2.1	16	88	0	50	55	8	0	35	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49800773--49800850	22	3.5	23	87	5	108	41	41	0	17	1.50
49801311--49801543	41	5.7	41	82	3	270	34	27	21	17	1.95
49801311--49801542	82	2.8	82	85	3	304	34	27	20	17	1.95
49801618--49801756	40	3.5	40	80	0	161	22	15	20	41	1.90
49807424--49807509	43	2.0	43	88	0	127	24	16	29	30	1.96
49808142--49808177	17	2.1	17	89	0	54	22	0	5	72	1.05
49809663--49809702	21	2.0	21	85	5	55	30	0	25	45	1.54
49812105--49812141	15	2.4	16	82	13	51	62	0	2	35	1.10
49818430--49818481	24	2.1	25	85	3	70	51	0	0	48	1.00
49818912--49818953	22	2.0	21	81	13	50	35	0	9	54	1.33
49839704--49839771	29	2.3	30	87	2	86	33	10	14	41	1.80
49839713--49839771	29	2.0	29	93	0	100	37	10	15	37	1.81
49839715--49839789	29	2.5	29	85	8	89	38	13	16	32	1.87
49845500--49845528	14	2.0	15	93	6	51	68	3	0	27	1.05
49847697--49847722	4	6.5	4	100	0	52	76	0	0	23	0.78
49851724--49851804	29	2.9	27	82	12	92	39	3	1	55	1.25
49865434--49865460	4	6.8	4	100	0	54	77	0	0	22	0.76
49873833--49873860	3	9.3	3	100	0	56	0	0	64	35	0.94
49882663--49882692	15	1.9	16	93	6	53	13	0	30	56	1.37
49884865--49884901	3	12.3	3	88	0	56	27	0	2	70	1.01
49885040--49885083	23	1.9	23	86	9	63	25	0	13	61	1.32
49885202--49885249	14	3.4	14	82	8	53	18	10	0	70	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49886011--49886048	19	2.1	18	85	14	51	15	15	5	63	1.48
49895018--49895567	273	2.0	274	86	3	777	30	22	24	23	1.99
49895701--49895779	28	2.8	28	83	9	72	11	12	3	72	1.25
49895697--49895779	30	2.9	28	80	8	87	13	12	3	71	1.28
49900460--49900546	25	3.5	25	80	1	104	20	26	22	29	1.99
49905904--49905989	43	2.0	43	100	0	172	23	25	25	25	2.00
49906476--49906648	24	7.0	26	72	11	89	38	20	24	16	1.93
49910116--49910185	36	1.9	36	88	0	104	24	11	22	41	1.87
49910200--49910235	16	2.2	16	90	0	54	63	0	16	19	1.30
49910208--49910245	16	2.4	16	82	4	51	65	0	15	18	1.27
49931931--49931965	16	2.2	16	89	0	52	45	17	11	25	1.81
49933087--49933247	80	2.0	79	97	1	304	25	26	9	37	1.87
49933807--49933861	23	2.5	23	82	8	62	56	7	7	29	1.53
49937012--49937059	24	2.0	24	95	0	87	25	35	4	35	1.75
49942800--49942864	22	2.9	23	70	6	71	56	9	3	30	1.46
49943251--49943302	27	1.9	27	96	0	95	26	21	32	19	1.97
49943375--49943444	19	3.7	19	82	3	97	37	10	0	52	1.35
49943380--49943450	37	1.9	37	100	0	142	39	11	0	49	1.39
49953908--49953954	14	3.3	14	88	5	76	42	0	2	55	1.12
49955289--49955353	21	3.1	21	84	2	87	15	23	26	35	1.94
49958213--49958341	64	2.0	64	86	0	177	20	19	24	35	1.96
49958408--49958536	26	5.0	26	82	1	136	17	23	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49958549--49958601	23	2.3	22	81	9	61	18	20	20	39	1.92
49959829--49959915	27	3.2	27	100	0	174	28	17	34	19	1.94
49964945--49964985	20	2.0	20	100	0	82	63	0	0	36	0.95
49964948--49964991	20	2.2	20	91	0	70	59	0	4	36	1.18
49964992--49965019	9	3.1	9	100	0	56	32	10	10	46	1.73
49968418--49968538	25	4.8	24	73	15	91	53	9	12	23	1.68
49968418--49968485	23	2.9	23	82	12	77	50	10	14	25	1.74
49968418--49968549	12	10.2	13	71	19	80	53	9	12	23	1.68
49971880--49971942	6	10.3	6	82	16	76	77	0	1	20	0.85
49971896--49971963	25	2.7	25	78	15	77	70	0	4	25	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211