genome.fa.s21.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  126  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39819194--39819229	18	2.0	18	100	0	72	50	11	5	33	1.61
39819327--39819378	22	2.3	23	83	9	63	50	5	0	44	1.26
39819557--39819604	24	2.0	24	91	0	78	60	2	0	37	1.09
39820033--39820064	7	4.6	7	100	0	64	59	0	0	40	0.97
39819999--39820064	22	3.0	22	80	6	73	60	0	0	39	0.97
39824132--39824177	21	2.2	20	88	7	65	65	8	21	4	1.38
39824901--39825209	132	2.3	131	87	5	428	25	23	19	32	1.97
39825034--39825209	44	4.0	44	68	8	151	23	23	19	32	1.97
39838472--39838517	21	2.2	20	88	7	65	65	8	21	4	1.38
39847468--39847526	8	7.5	8	84	7	68	64	0	1	33	1.04
39847479--39847526	7	6.4	7	81	11	51	62	0	2	35	1.07
39847479--39847526	14	3.2	14	82	11	60	62	0	2	35	1.07
39847468--39847537	31	2.3	31	81	16	92	64	0	1	34	1.03
39847505--39847556	19	2.7	18	73	21	52	67	0	3	28	1.08
39847676--39847827	25	5.9	25	73	13	94	55	3	7	33	1.45
39847753--39847817	13	4.8	13	74	22	53	63	0	3	33	1.10
39848371--39848512	29	4.8	29	83	6	162	21	4	46	27	1.70
39848415--39848512	29	3.3	30	91	4	164	20	4	46	28	1.68
39849230--39849777	72	7.6	72	82	11	633	31	20	17	30	1.96
39849415--39849443	14	2.0	15	93	6	51	58	6	20	13	1.58
39849431--39849776	68	5.0	70	88	8	509	31	20	17	30	1.96
39849788--39849960	69	2.5	71	85	6	214	33	22	14	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39849597--39849960	188	1.9	190	86	5	513	33	20	15	29	1.94
39858189--39858224	12	3.0	12	95	0	63	41	5	25	27	1.77
39859794--39859843	16	3.3	15	86	11	66	64	2	2	32	1.16
39859794--39859836	22	2.0	22	86	9	61	65	2	0	32	1.06
39859794--39859843	8	6.5	8	78	15	52	64	2	2	32	1.16
39859992--39860056	25	2.7	25	88	6	91	52	4	7	35	1.51
39860070--39860126	14	4.1	13	75	22	53	63	0	3	33	1.12
39860746--39860814	30	2.3	30	94	0	120	20	4	47	27	1.68
39864881--39864940	31	2.0	30	87	9	86	50	1	1	46	1.21
39865608--39865902	151	2.0	150	94	0	518	27	21	20	30	1.98
39867322--39867367	19	2.4	19	86	10	67	71	2	2	23	1.08
39869798--39869844	19	2.5	19	89	6	69	59	0	2	38	1.09
39869875--39869923	19	2.5	19	83	3	62	59	2	4	34	1.28
39869874--39869932	19	3.0	20	73	9	59	59	3	3	33	1.31
39870069--39870215	67	2.2	67	81	6	163	31	4	3	59	1.34
39870133--39870266	10	14.4	9	67	16	60	28	2	1	67	1.14
39870061--39870250	19	9.8	19	70	12	93	30	4	2	62	1.30
39870133--39870250	9	12.3	10	73	12	88	27	3	1	66	1.17
39870171--39870231	29	2.1	28	82	8	70	29	3	3	63	1.26
39870086--39870248	67	2.4	66	83	9	188	28	4	3	63	1.30
39870209--39870268	27	2.3	25	80	11	68	25	3	0	71	1.01
39880763--39880787	12	2.1	12	100	0	50	60	0	8	32	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39881144--39881214	31	2.4	30	81	9	74	71	4	1	22	1.11
39882551--39882588	20	1.9	20	88	0	58	42	0	2	55	1.14
39883182--39883215	15	2.2	16	89	5	52	67	0	0	32	0.91
39887507--39887538	15	2.1	15	94	0	55	15	6	9	68	1.36
39895839--39895940	43	2.4	43	83	1	134	30	30	13	25	1.94
39897778--39897810	17	1.9	17	100	0	66	30	18	24	27	1.98
39897780--39897817	17	2.2	17	90	0	58	28	23	26	21	1.99
39904309--39904372	31	2.1	31	88	5	94	53	10	12	23	1.70
39904325--39904392	29	2.3	28	83	16	84	55	8	10	25	1.62
39905015--39905082	32	2.1	32	91	0	109	25	19	8	47	1.78
39905410--39905522	59	1.9	59	85	3	154	49	14	14	22	1.78
39906099--39906132	6	5.8	6	93	6	52	85	11	2	0	0.71
39906099--39906132	17	1.9	17	88	5	50	85	11	2	0	0.71
39908982--39909028	23	1.9	23	83	12	58	55	6	4	34	1.45
39909102--39909136	3	11.7	3	100	0	70	68	31	0	0	0.90
39913762--39913931	41	4.1	41	89	3	252	25	20	24	30	1.99
39925363--39925416	7	7.9	7	79	4	65	12	46	0	40	1.42
39925368--39925403	13	2.6	14	91	4	56	11	55	0	33	1.35
39925662--39925695	6	5.7	6	92	0	59	17	0	11	70	1.16
39925769--39926023	128	2.0	128	96	0	465	27	12	14	45	1.80
39926343--39926397	28	2.0	28	96	0	101	29	12	27	30	1.93
39928384--39928434	26	2.0	26	92	0	84	41	5	31	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39931941--39931998	27	2.1	27	81	12	66	39	1	0	58	1.08
39932443--39932484	19	2.2	19	95	0	75	28	11	35	23	1.91
39939562--39939592	10	3.0	10	95	4	53	22	9	0	67	1.19
39940150--39940196	24	1.9	25	91	4	78	59	14	14	10	1.61
39940095--39940234	72	1.9	72	82	5	176	49	17	16	17	1.80
39941003--39941039	19	2.0	19	89	5	58	54	0	18	27	1.44
39942022--39942054	14	2.4	14	85	15	50	72	0	15	12	1.12
39943345--39943418	30	2.3	32	84	13	107	52	8	13	25	1.67
39943359--39943423	30	2.1	31	97	2	123	47	6	15	30	1.70
39952181--39952228	19	2.4	19	82	6	60	45	18	22	12	1.83
39955831--39955855	9	2.8	9	100	0	50	12	68	0	20	1.21
39957770--39957852	26	3.2	26	61	16	62	40	9	15	33	1.80
39957750--39957858	53	2.1	53	100	0	218	42	9	17	31	1.80
39972910--39972965	25	2.2	25	93	0	94	26	12	25	35	1.91
39975953--39975989	20	1.9	18	89	10	56	54	8	2	35	1.44
39978955--39979020	32	2.1	32	94	0	114	34	18	18	28	1.94
39979753--39979799	24	2.0	24	95	0	85	25	14	23	36	1.93
39981685--39981752	35	1.9	35	82	11	86	16	7	7	69	1.35
39983739--39983811	23	3.0	23	79	15	85	67	13	9	9	1.43
39990734--39990829	31	3.1	31	95	0	165	28	20	25	26	1.99
39990752--39990811	18	3.6	18	72	21	67	28	18	26	26	1.98
39990939--39990994	27	2.1	26	86	3	76	46	12	10	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39990973--39991015	21	2.0	22	90	4	70	46	6	20	25	1.76
39991540--39991594	27	2.0	27	85	0	74	32	30	12	23	1.92
39991558--39991633	27	2.8	26	82	7	73	34	35	11	18	1.87
39991584--39991647	27	2.4	27	81	0	74	34	35	14	15	1.88
39993629--39993669	21	2.0	21	95	0	73	34	0	14	51	1.43
39993635--39993678	21	2.1	21	91	0	70	38	0	9	52	1.33
39996613--39996674	30	2.1	30	96	0	115	50	20	9	19	1.76
39999505--40000332	140	6.0	140	83	6	1035	30	21	20	28	1.98
40000059--40000320	126	2.1	126	86	2	375	30	22	20	26	1.98
40006834--40006877	19	2.3	19	84	4	52	36	13	6	43	1.71
40008260--40008381	41	2.9	41	83	2	154	37	18	17	27	1.92
40008585--40008661	6	12.8	6	90	0	118	32	11	35	20	1.89
40025171--40025232	29	2.1	29	96	0	115	16	12	19	51	1.76
40037609--40037652	17	2.4	18	81	7	54	18	45	27	9	1.79
40039660--40040080	138	3.1	138	91	1	682	45	5	7	41	1.56
40040059--40040203	75	1.9	75	92	0	245	29	13	9	47	1.74
40051291--40051339	10	4.6	11	73	16	50	53	0	2	44	1.12
40051291--40051339	22	2.3	20	83	16	64	53	0	2	44	1.12
40051345--40051373	11	2.5	12	94	5	51	0	13	0	86	0.58
40051411--40051472	30	2.1	30	87	6	90	50	9	8	32	1.65
40071691--40071740	26	1.9	26	87	0	73	36	14	22	28	1.92
40071691--40071747	26	2.2	26	83	0	69	36	12	19	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40072909--40072978	27	2.5	29	86	4	90	30	21	27	21	1.98
40073105--40073377	27	10.2	27	84	3	329	23	15	20	40	1.91
40073122--40073377	53	4.8	54	86	2	340	23	15	20	40	1.90
40073135--40073377	80	3.0	80	87	1	346	23	15	20	40	1.90
40084292--40084439	57	2.8	52	76	12	149	45	8	16	29	1.77
40084312--40084439	57	2.2	57	85	0	166	48	7	17	26	1.74
40085862--40085900	20	2.0	19	85	5	51	56	2	0	41	1.13
40089623--40089970	42	8.3	42	84	3	362	23	15	21	39	1.92
40089623--40089970	127	2.8	126	83	5	434	23	15	21	39	1.92
40091185--40091229	22	2.1	22	84	12	58	37	4	8	48	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211