genome.fa.s19.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  10  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3371534--3372005	20	23.6	20	65	14	82	21	17	8	52	1.71
3371662--3371720	17	3.3	17	80	7	55	23	18	3	54	1.59
3371521--3371845	40	8.1	40	66	11	112	21	19	7	52	1.71
3371705--3371886	83	2.2	83	89	1	267	20	18	9	52	1.72
3371769--3371888	41	2.9	41	73	9	118	20	15	9	54	1.69
3371910--3371963	19	2.7	21	69	11	51	18	12	5	62	1.48
3374921--3374975	29	1.9	28	85	3	74	60	1	9	29	1.38
3378070--3378131	21	3.0	21	72	23	58	61	4	0	33	1.17
3386359--3386387	3	9.7	3	100	0	58	31	0	0	68	0.89
3386969--3387039	36	2.0	36	91	5	117	12	11	28	47	1.76
3389078--3389445	184	2.0	184	96	0	682	21	10	18	48	1.79
3395684--3395732	24	2.0	24	92	0	80	28	20	10	40	1.85
3396027--3396088	31	2.0	31	84	6	81	45	1	9	43	1.46
3396294--3396348	29	1.9	28	88	3	83	25	5	12	56	1.58
3396794--3396839	16	2.6	18	77	16	51	69	0	0	30	0.89
3407829--3407886	29	2.0	29	86	3	80	63	8	3	24	1.38
3411021--3411212	102	1.9	102	84	2	260	38	25	9	26	1.87
3414277--3414341	33	2.0	33	84	6	87	43	13	7	35	1.73
3420505--3420575	28	2.5	28	93	0	115	26	21	26	25	1.99
3420505--3420553	16	3.3	16	67	21	52	28	22	26	22	1.99
3424134--3424311	88	2.0	88	95	0	320	44	6	19	30	1.75
3426072--3426257	75	2.5	75	95	0	336	21	18	27	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3426119--3426255	42	3.5	41	77	17	173	21	18	27	32	1.97
3426160--3426357	100	2.0	101	93	1	344	20	20	27	31	1.97
3426083--3426569	175	2.8	177	95	1	897	20	20	27	31	1.98
3426261--3426432	75	2.3	75	94	1	301	20	19	27	31	1.97
3426333--3426534	102	2.0	102	97	0	377	19	21	28	30	1.98
3428212--3428276	22	3.0	22	84	8	87	18	23	16	41	1.90
3433375--3433495	23	5.3	23	93	0	179	30	25	23	20	1.98
3435434--3435484	17	2.8	19	80	17	63	27	0	0	72	0.85
3435434--3435480	10	4.7	10	82	12	53	25	0	0	74	0.82
3435434--3435482	22	2.3	22	89	3	73	26	0	0	73	0.83
3437825--3437875	6	8.7	6	84	4	68	76	1	0	21	0.88
3437816--3437875	29	2.1	29	100	0	120	71	3	0	25	1.01
3437816--3437864	17	3.2	17	75	24	63	69	4	0	26	1.06
3437831--3437877	23	2.0	23	91	0	76	74	4	0	21	0.99
3441224--3441284	22	2.8	20	73	11	50	62	1	1	34	1.15
3445888--3446023	55	2.5	55	84	5	181	18	19	22	40	1.91
3455320--3455452	70	1.9	67	81	4	158	32	11	12	43	1.78
3459705--3459762	29	2.0	29	100	0	116	27	6	13	51	1.66
3460982--3461017	17	2.1	18	94	5	65	50	0	2	47	1.15
3460954--3461027	10	7.5	10	78	15	75	54	0	2	43	1.14
3461050--3461095	16	2.8	17	83	6	58	60	0	0	39	0.97
3461003--3461095	40	2.3	38	85	14	132	62	0	1	36	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3465989--3466069	31	2.7	29	81	11	83	39	14	1	44	1.54
3473124--3473191	10	6.4	10	73	17	57	73	4	20	1	1.08
3473124--3473191	15	4.2	16	76	12	77	73	4	20	1	1.08
3474080--3474220	39	3.6	39	79	9	153	26	17	23	32	1.96
3474889--3474935	22	2.1	22	92	0	76	25	19	29	25	1.98
3477141--3477237	49	2.0	49	93	0	167	35	19	12	32	1.89
3481539--3481563	6	4.2	6	100	0	50	16	32	0	52	1.44
3499073--3499128	28	2.0	29	82	3	69	53	1	1	42	1.21
3499889--3499933	3	15.0	3	100	0	90	33	0	0	66	0.92
3500287--3500382	39	2.5	39	80	6	108	20	23	28	27	1.99
3502547--3502689	74	1.9	73	88	1	214	39	32	11	16	1.85
3512662--3512726	22	2.8	23	76	9	60	32	1	6	60	1.31
3525228--3525270	21	1.9	21	86	13	59	46	4	6	41	1.51
3526465--3526699	115	2.0	116	96	0	436	34	18	12	34	1.88
3535952--3536007	20	2.9	19	84	7	69	71	3	3	21	1.17
3535957--3536012	6	9.0	6	74	14	51	75	3	1	19	1.05
3535957--3536012	11	4.5	12	74	14	51	75	3	1	19	1.05
3539426--3539450	11	2.3	11	100	0	50	56	0	8	36	1.29
3543028--3543369	173	2.0	173	89	4	521	29	15	22	33	1.94
3559252--3559309	30	2.0	29	83	10	73	55	6	6	31	1.53
3567395--3567428	5	6.6	5	86	6	50	35	2	0	61	1.11
3567395--3567428	16	2.2	16	89	5	52	35	2	0	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3567814--3567847	18	1.9	17	88	5	50	61	0	0	38	0.96
3574051--3574075	6	4.2	6	100	0	50	16	0	0	84	0.63
3575342--3575378	13	2.8	14	84	12	51	54	0	0	45	1.00
3580599--3580674	31	2.5	31	73	4	82	26	15	11	46	1.81
3584240--3584266	3	9.0	3	100	0	54	66	0	0	33	0.92
3588951--3588976	3	8.7	3	100	0	52	30	0	0	69	0.89
3590778--3590976	89	2.3	84	80	10	195	27	24	16	32	1.96
3592639--3592682	22	2.0	22	82	8	54	54	2	4	38	1.33
3595128--3595225	27	3.7	26	74	15	85	29	2	5	63	1.27
3595923--3595987	29	2.2	29	94	0	112	33	15	16	33	1.91
3595923--3596001	29	2.7	29	88	0	95	32	13	16	36	1.88
3596827--3596891	20	3.2	20	76	12	69	63	1	3	32	1.19
3600776--3600813	3	12.7	3	100	0	76	34	0	31	34	1.58
3617246--3617452	90	2.3	89	85	4	274	35	21	11	31	1.89
3617603--3617651	20	2.5	20	83	3	64	65	2	6	26	1.27
3617850--3617914	19	3.3	19	80	8	76	35	4	0	60	1.18
3617893--3617925	12	2.7	13	90	9	52	36	0	0	63	0.95
3618127--3618173	22	2.1	22	84	0	58	27	0	19	53	1.45
3618059--3618334	90	3.1	88	83	5	317	32	7	19	39	1.81
3626643--3626677	17	2.0	17	88	5	52	54	8	2	34	1.46
3628344--3628393	15	3.4	15	88	2	66	58	0	2	40	1.10
3629567--3629612	19	2.4	19	89	7	67	56	0	2	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3629895--3629954	26	2.3	27	94	2	104	41	6	0	51	1.28
3630334--3630397	19	3.4	19	78	4	85	35	10	1	51	1.47
3630626--3630684	19	3.2	19	82	4	84	49	0	13	37	1.43
3634600--3634692	42	2.2	43	78	9	100	31	22	18	27	1.97
3634612--3634705	42	2.2	43	84	5	120	30	24	17	27	1.97
3635919--3635957	18	2.2	17	86	13	53	33	0	20	46	1.51
3636183--3636279	23	4.3	23	89	5	162	20	20	26	31	1.97
3636183--3636272	44	2.0	44	95	0	162	20	21	26	32	1.97
3643252--3643290	18	2.2	17	86	13	53	33	0	20	46	1.51
3643516--3643612	23	4.3	23	89	5	162	20	20	26	31	1.97
3643516--3643605	44	2.0	44	95	0	162	20	21	26	32	1.97
3645020--3645059	12	3.3	12	92	0	53	2	37	17	42	1.63
3645044--3645112	21	3.3	21	85	0	93	1	42	21	34	1.62
3650668--3650728	18	3.4	18	83	0	77	39	1	19	39	1.62
3650668--3650759	27	3.4	27	87	3	78	40	2	16	41	1.60
3650678--3651494	36	22.7	36	78	6	435	36	3	11	48	1.58
3650685--3651492	27	27.6	27	74	20	566	36	3	11	48	1.58
3650685--3651492	90	9.1	90	87	6	888	36	3	11	48	1.58
3651382--3651487	55	1.9	56	90	1	169	35	6	12	45	1.68
3652119--3652152	13	2.5	14	85	9	52	35	2	2	58	1.28
3652123--3652155	13	2.5	13	95	0	57	36	3	3	57	1.29
3654904--3655191	115	2.5	114	79	5	278	28	22	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3667848--3667896	24	2.0	24	84	4	62	57	4	8	30	1.47
3668073--3668119	21	2.1	23	84	7	62	61	6	6	25	1.44
3670119--3670155	19	1.9	19	88	0	56	32	5	2	59	1.34
3673419--3673498	31	2.5	31	82	11	92	37	10	6	46	1.63
3674145--3674176	16	2.0	16	93	0	55	53	0	0	46	1.00
3688442--3688555	51	2.2	51	84	6	142	42	8	15	32	1.78
3710996--3711414	208	2.0	210	89	1	644	35	15	19	29	1.93
3729441--3729480	15	2.6	16	84	8	64	45	30	10	15	1.78
3731143--3731168	3	8.7	3	100	0	52	0	34	34	30	1.58
3731387--3731692	123	2.5	119	85	6	416	15	11	37	35	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207