genome.fa.s19.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D06
Parameters: 2 7 7 80 10 50 1000
Length:  62964862

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   

This is table  44  of  207  ( 24831 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12894765--12895123	159	2.3	159	83	1	436	33	12	26	27	1.92
12895255--12895372	57	2.1	57	86	0	164	37	16	22	23	1.93
12895260--12895353	29	3.3	29	67	14	77	34	17	23	25	1.96
12895270--12895423	57	2.7	57	82	0	173	35	14	24	25	1.94
12901118--12901212	37	2.5	35	75	14	82	22	16	28	32	1.96
12910652--12910680	12	2.3	13	94	5	51	75	6	0	17	1.01
12911804--12911869	28	2.4	28	78	19	75	42	6	4	46	1.48
12922363--12922452	24	3.7	25	74	14	82	11	23	24	41	1.87
12922363--12922500	49	2.8	49	80	9	138	16	20	23	39	1.92
12922433--12922490	25	2.3	25	77	11	64	20	18	20	39	1.92
12927795--12927859	20	3.2	21	79	14	66	63	0	1	35	1.04
12928553--12928608	27	2.0	27	83	10	69	33	0	5	60	1.19
12930238--12930372	31	4.4	31	67	17	84	44	10	18	26	1.82
12930238--12930406	91	1.9	90	81	3	205	47	9	17	25	1.77
12934163--12934224	21	3.0	21	79	9	72	27	16	25	30	1.96
12935312--12935371	15	4.0	15	80	0	66	28	6	25	40	1.80
12938894--12938952	3	19.7	3	100	0	118	32	33	0	33	1.58
12938951--12938984	3	11.3	3	100	0	68	0	32	0	67	0.91
12940168--12940202	13	2.6	14	81	9	54	17	17	17	48	1.81
12940615--12940665	25	2.0	27	84	7	70	68	3	25	1	1.17
12940599--12940676	25	3.3	25	69	16	67	71	2	20	5	1.17
12941378--12941402	11	2.3	11	100	0	50	36	0	8	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12943810--12943879	22	3.2	22	79	4	88	48	0	0	51	1.00
12943828--12943866	12	3.2	12	86	10	53	53	0	0	46	1.00
12943807--12943911	22	4.4	24	69	22	71	50	0	0	48	1.07
12945231--12945325	43	2.2	43	98	0	181	50	0	4	45	1.21
12945241--12945323	9	9.3	9	68	21	50	49	0	4	45	1.23
12945245--12945321	18	3.8	18	72	24	64	51	0	5	42	1.24
12945821--12945850	15	2.0	15	93	0	51	36	0	0	63	0.95
12950247--12950404	27	5.9	27	82	0	163	27	20	16	35	1.94
12950248--12950412	54	3.1	54	81	0	186	26	20	15	38	1.92
12954245--12954317	25	2.9	25	74	8	67	28	16	28	26	1.97
12954935--12954977	21	2.0	21	90	0	68	41	16	0	41	1.48
12956026--12956155	27	4.8	27	88	1	163	24	26	16	33	1.96
12959050--12959109	28	2.2	26	80	13	68	33	1	16	48	1.56
12959247--12959301	25	2.2	25	96	0	101	25	21	16	36	1.94
12959247--12959314	25	2.7	25	90	4	93	26	22	19	32	1.97
12972629--12972676	20	2.4	20	75	0	51	16	6	35	41	1.74
12972634--12972706	27	2.8	26	83	8	94	17	5	34	42	1.73
12988375--12988471	45	2.2	44	81	3	104	43	6	18	31	1.75
12988632--12988682	26	1.9	26	84	11	68	37	11	17	33	1.86
12998565--12998641	32	2.4	32	80	4	93	44	6	24	24	1.77
12998650--12998736	36	2.3	38	86	5	115	37	12	14	34	1.85
13002896--13002937	22	2.0	21	81	13	50	47	7	0	45	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13004238--13004278	21	1.9	22	85	5	57	43	7	2	46	1.44
13007647--13007740	22	4.3	22	86	0	134	35	28	0	36	1.58
13007779--13007839	28	2.1	29	82	8	72	39	0	1	59	1.08
13007777--13007832	28	2.0	29	86	6	80	39	0	1	58	1.08
13007930--13007963	15	2.3	15	90	5	52	26	0	5	67	1.13
13010105--13010282	29	6.1	29	95	0	329	42	26	1	29	1.63
13013517--13013722	85	2.4	85	95	0	360	34	22	18	24	1.96
13019000--13019087	30	3.0	30	81	1	115	37	21	15	25	1.93
13020979--13021045	22	3.0	22	84	0	80	23	14	22	38	1.92
13020987--13021070	44	1.9	44	82	4	107	25	15	20	39	1.91
13025547--13025575	6	4.8	6	100	0	58	51	0	0	48	1.00
13025620--13025684	21	2.9	22	71	20	53	43	1	4	50	1.32
13025626--13025674	25	2.0	25	87	0	71	42	2	4	51	1.32
13025841--13025868	2	14.0	2	100	0	56	50	0	0	50	1.00
13026180--13026249	35	2.0	34	88	2	104	34	8	4	52	1.51
13038431--13038497	35	1.9	35	84	6	91	16	10	32	40	1.82
13038513--13038585	36	2.0	36	91	0	119	15	12	36	35	1.84
13041212--13041434	43	5.2	43	79	2	196	24	17	20	37	1.94
13041211--13041434	86	2.6	86	79	0	232	24	17	20	37	1.94
13041381--13041479	43	2.3	43	85	0	135	21	19	18	41	1.91
13046105--13046151	25	1.9	25	82	4	60	14	23	21	40	1.90
13046226--13046299	26	2.9	26	80	4	80	20	27	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13059500--13059594	22	4.3	22	78	9	95	21	28	14	35	1.93
13059500--13059594	44	2.2	44	84	0	118	21	28	14	35	1.93
13060699--13061042	111	3.1	111	87	3	451	30	22	23	23	1.99
13060725--13061397	114	5.9	112	79	6	502	26	22	24	26	2.00
13060731--13061397	228	2.9	226	80	6	656	26	22	24	26	2.00
13062576--13062602	14	1.9	14	100	0	54	40	14	0	44	1.46
13062792--13062888	38	2.6	38	90	3	151	21	2	38	38	1.65
13062866--13062910	22	2.0	22	83	8	56	20	0	44	35	1.51
13065504--13065674	47	3.8	47	75	12	203	36	15	4	44	1.65
13065680--13065757	18	4.2	18	80	15	95	44	10	1	43	1.46
13065687--13065764	39	2.0	41	94	5	142	43	10	0	46	1.37
13066010--13066039	12	2.5	12	100	0	60	50	10	0	40	1.36
13066028--13066198	25	7.1	25	75	14	139	49	18	1	30	1.58
13066161--13066199	20	2.0	20	100	0	78	53	20	0	25	1.45
13066209--13066271	16	3.8	17	76	16	60	52	20	1	25	1.56
13066210--13066265	25	2.2	25	87	6	78	53	19	1	25	1.55
13066271--13066356	25	3.5	24	76	9	75	45	16	3	34	1.64
13066052--13066361	9	36.0	9	65	19	110	47	18	2	31	1.61
13066299--13066330	16	2.0	16	93	0	55	40	18	3	37	1.67
13066326--13066356	16	1.9	16	93	0	53	54	16	0	29	1.42
13068557--13068750	43	4.3	43	74	18	160	27	19	30	23	1.98
13091381--13091413	11	3.1	11	86	8	50	33	36	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13095560--13095598	21	1.9	19	85	10	51	28	5	5	61	1.39
13105552--13105758	101	2.0	102	85	8	283	28	17	16	37	1.92
13116374--13116413	3	13.3	3	100	0	80	32	0	0	67	0.91
13118699--13118780	42	2.0	42	87	4	121	26	3	31	37	1.74
13118769--13118935	33	5.1	33	81	3	194	27	4	46	21	1.69
13136864--13137271	114	3.6	114	86	3	560	26	22	26	24	2.00
13136864--13137271	227	1.8	225	86	5	590	26	22	26	24	2.00
13137055--13137460	186	2.2	188	86	1	566	25	20	26	26	1.99
13137166--13137340	73	2.4	72	84	0	224	25	21	26	26	1.99
13137241--13137561	115	2.8	115	83	0	349	26	20	23	29	1.99
13137355--13137696	188	1.8	188	82	5	440	27	20	23	27	1.99
13137808--13137858	8	6.5	8	75	4	50	52	29	0	17	1.45
13141235--13141313	16	5.0	16	77	13	83	43	15	2	39	1.60
13141237--13141317	9	9.0	9	70	15	60	43	16	2	38	1.61
13141318--13141371	17	3.1	18	79	17	69	38	0	1	59	1.08
13141326--13141355	15	2.0	15	93	0	51	40	0	3	56	1.16
13141341--13141379	19	2.0	20	95	5	71	43	0	0	56	0.99
13141381--13141443	23	3.0	20	72	20	58	49	20	0	30	1.49
13141398--13141507	31	3.4	31	76	13	98	47	20	0	32	1.50
13141505--13141563	24	2.5	24	86	5	77	52	16	1	28	1.54
13141505--13141556	12	4.3	12	80	0	59	51	17	1	28	1.56
13142752--13142791	3	13.3	3	94	0	71	30	0	2	67	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13142962--13143011	21	2.4	22	74	16	52	34	6	4	56	1.43
13147979--13148019	13	3.4	12	83	9	57	85	0	14	0	0.60
13147980--13148019	11	3.5	11	89	6	53	85	0	15	0	0.61
13148016--13148048	6	5.7	6	89	3	50	72	9	0	18	1.10
13148927--13148964	15	2.5	15	87	8	51	68	0	15	15	1.22
13150162--13151039	129	6.8	129	91	1	1373	33	18	22	25	1.97
13150162--13151039	259	3.4	258	91	2	1388	33	18	22	25	1.97
13150162--13151039	388	2.3	387	90	2	1384	33	18	22	25	1.97
13151037--13152407	44	31.6	43	70	11	509	27	18	25	27	1.98
13151015--13151827	218	3.7	217	92	1	1301	27	19	25	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207